Wall clock time and date at job start Mon Mar 30 2020 07:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47184 * 2 1 4 4 N 1.39958 * 125.01850 * 90.02492 * 3 2 1 5 5 C 1.32064 * 108.96017 * 179.97438 * 4 3 2 6 6 C 1.41158 * 134.68003 * 179.97438 * 5 4 3 7 7 C 1.35628 * 119.59431 * 180.02562 * 6 5 4 8 8 C 1.50699 * 119.09210 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.46723 * 269.95378 * 8 7 6 10 10 H 1.07992 * 120.00058 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99830 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99855 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00133 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47131 * 60.00149 * 13 11 9 15 15 H 1.48493 * 109.47296 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.47221 * 300.00462 * 13 11 9 17 17 C 1.39688 * 121.81738 * 359.95366 * 7 6 5 18 18 C 1.35652 * 121.72762 * 0.05193 * 17 7 6 19 19 C 1.41132 * 119.53263 * 359.96950 * 18 17 7 20 20 C 1.33991 * 125.02696 * 270.00625 * 3 2 1 21 21 C 1.50693 * 126.04180 * 359.97438 * 20 3 2 22 22 H 1.09005 * 109.47163 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46999 * 299.99175 * 1 2 3 24 24 H 1.08998 * 109.47473 * 59.99318 * 1 2 3 25 25 H 1.09001 * 109.46999 * 240.00825 * 2 1 3 26 26 H 1.08998 * 109.47473 * 120.00682 * 2 1 3 27 27 H 1.08001 * 120.19981 * 0.05101 * 6 5 4 28 28 H 1.09001 * 109.47312 * 29.94998 * 8 7 6 29 29 H 1.09004 * 109.47342 * 149.95593 * 8 7 6 30 30 H 0.97008 * 120.00024 * 180.02562 * 12 11 9 31 31 H 1.07999 * 119.13823 * 180.02562 * 17 7 6 32 32 H 1.07995 * 120.23208 * 180.02562 * 18 17 7 33 33 H 1.08998 * 109.47464 * 270.02150 * 21 20 3 34 34 H 1.09001 * 109.47631 * 30.02918 * 21 20 3 35 35 H 1.09005 * 109.47056 * 150.02359 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2865 2.1382 1.1462 5 6 2.7099 3.3346 0.7809 6 6 3.1206 4.4956 1.4709 7 6 3.5074 5.5900 0.7694 8 6 3.9442 6.8232 1.5175 9 6 2.7504 7.7087 1.7666 10 1 1.7733 7.4083 1.4184 11 6 2.9057 8.9018 2.4400 12 7 4.0956 9.2673 2.8644 13 14 1.4263 9.9997 2.7481 14 1 0.4210 9.2612 3.5539 15 1 1.8565 11.2148 3.4854 16 1 0.8250 10.3963 1.4494 17 6 3.5136 5.6053 -0.6274 18 6 3.1317 4.5255 -1.3542 19 6 2.7162 3.3515 -0.6902 20 6 2.2746 2.1063 -1.0972 21 6 2.1120 1.6453 -2.5226 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.1270 4.5121 2.5507 28 1 4.3861 6.5325 2.4706 29 1 4.6815 7.3653 0.9254 30 1 4.2048 10.1065 3.3385 31 1 3.8304 6.5003 -1.1421 32 1 3.1463 4.5637 -2.4334 33 1 3.0416 1.1915 -2.8661 34 1 1.3075 0.9118 -2.5778 35 1 1.8690 2.4991 -3.1552 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261200549.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:36 Heat of formation + Delta-G solvation = 75.970433 kcal Electronic energy + Delta-G solvation = -16748.922819 eV Core-core repulsion = 14133.848754 eV Total energy + Delta-G solvation = -2615.074065 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.95421 -37.29192 -34.13270 -32.97646 -32.42230 -30.39861 -29.37172 -27.17345 -26.48385 -24.38296 -22.75254 -21.51313 -20.33498 -18.95918 -16.61398 -16.43416 -16.22373 -15.28252 -14.79264 -14.41166 -14.16475 -13.87722 -13.27337 -13.21505 -12.88835 -12.76437 -12.48754 -12.17155 -11.92324 -11.62537 -11.34912 -11.23651 -10.99262 -10.68653 -10.54707 -10.46543 -9.75717 -9.61726 -9.44093 -9.31126 -8.35801 -7.75306 -6.96075 -5.97953 -4.01222 1.15155 2.50350 2.57527 2.93022 3.37097 3.40602 3.44569 4.36842 4.44612 4.56657 4.64067 4.75348 4.93512 4.96838 5.00138 5.29766 5.34243 5.36805 5.47204 5.56068 5.64533 5.83418 5.93954 5.98342 6.02262 6.30648 6.59934 6.79655 7.08329 7.19588 7.22239 7.32643 7.55464 7.69318 7.93490 7.98239 8.17195 8.38898 9.03720 9.61984 11.11925 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034871 B = 0.005023 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.764046 B = 5572.783284 C = 5812.112661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.122 3.878 3 N -0.332 5.332 4 N -0.324 5.324 5 C 0.118 3.882 6 C -0.131 4.131 7 C 0.002 3.998 8 C 0.046 3.954 9 C -0.509 4.509 10 H 0.057 0.943 11 C 0.059 3.941 12 N -0.895 5.895 13 Si 0.895 3.105 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.126 4.126 18 C -0.070 4.070 19 C -0.205 4.205 20 C 0.086 3.914 21 C -0.087 4.087 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.122 0.878 28 H 0.030 0.970 29 H 0.031 0.969 30 H 0.262 0.738 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.305 -17.332 -10.616 20.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.108 5.108 4 N -0.151 5.151 5 C -0.034 4.034 6 C -0.152 4.152 7 C -0.002 4.002 8 C 0.010 3.990 9 C -0.548 4.548 10 H 0.075 0.925 11 C -0.143 4.143 12 N -0.534 5.534 13 Si 0.723 3.277 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.145 4.145 18 C -0.090 4.090 19 C -0.215 4.215 20 C -0.050 4.050 21 C -0.146 4.146 22 H 0.095 0.905 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.110 0.890 26 H 0.115 0.885 27 H 0.140 0.860 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.138 0.862 32 H 0.131 0.869 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.547 -18.148 -9.477 20.972 hybrid contribution -0.690 1.125 -0.382 1.374 sum -5.237 -17.023 -9.859 20.357 Atomic orbital electron populations 1.22182 0.94101 1.02931 1.03562 1.21705 0.95433 0.78426 1.04391 1.48481 1.46973 1.11655 1.03723 1.77666 1.29048 1.04813 1.03593 1.21046 0.96871 0.92798 0.92724 1.19693 1.06396 0.89862 0.99280 1.20169 0.91329 0.95383 0.93349 1.18427 0.96904 0.88633 0.95082 1.21022 0.93963 1.03543 1.36253 0.92470 1.24992 0.95878 0.97759 0.95637 1.69951 1.21864 1.22961 1.38628 0.86604 0.82897 0.79816 0.78415 1.20199 1.21267 1.20187 1.20650 1.01933 0.97858 0.94081 1.20093 0.99333 0.91366 0.98179 1.19302 1.13434 0.94818 0.93912 1.20976 1.01644 0.92136 0.90234 1.20426 1.02482 1.02399 0.89257 0.90530 0.91303 0.91996 0.89022 0.88483 0.85955 0.95131 0.95077 0.92838 0.86173 0.86916 0.90279 0.91294 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 10.24 37.16 0.38 -1.04 16 2 C 0.12 1.17 6.66 -4.04 -0.03 1.14 16 3 N -0.33 -4.96 3.55 -56.62 -0.20 -5.16 16 4 N -0.32 -6.30 12.54 33.25 0.42 -5.89 16 5 C 0.12 2.46 7.49 -83.05 -0.62 1.84 16 6 C -0.13 -2.94 9.65 -39.41 -0.38 -3.32 16 7 C 0.00 0.05 5.03 -105.01 -0.53 -0.48 16 8 C 0.05 1.22 5.05 -29.03 -0.15 1.08 16 9 C -0.51 -14.56 9.09 -34.44 -0.31 -14.87 16 10 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 13 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 C -0.13 -2.52 9.51 -39.97 -0.38 -2.90 16 18 C -0.07 -1.21 10.09 -39.41 -0.40 -1.61 16 19 C -0.21 -3.73 6.26 -105.19 -0.66 -4.39 16 20 C 0.09 1.24 6.98 -81.65 -0.57 0.67 16 21 C -0.09 -0.79 9.83 36.00 0.35 -0.43 16 22 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.09 0.60 7.51 -51.93 -0.39 0.21 16 26 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.12 2.75 8.06 -52.49 -0.42 2.33 16 28 H 0.03 0.84 8.06 -51.93 -0.42 0.43 16 29 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 31 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 32 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.47 7.60 -51.93 -0.39 0.08 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 301.89 15.07 4.55 4.55 Total: -1.00 -33.46 301.89 -7.87 -41.33 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -4.97 Total: -2.99 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -3.39 Total: -22.73 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.95 Total: -37.06 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.46 -7.87 -41.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261200549.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.300 kcal (2) G-P(sol) polarization free energy of solvation -33.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds