Wall clock time and date at job start Mon Mar 30 2020 07:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47184 * 2 1 4 4 N 1.39958 * 125.01850 * 90.02492 * 3 2 1 5 5 C 1.32064 * 108.96017 * 179.97438 * 4 3 2 6 6 C 1.41158 * 134.68003 * 179.97438 * 5 4 3 7 7 C 1.35628 * 119.59431 * 180.02562 * 6 5 4 8 8 C 1.50699 * 119.09210 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.46723 * 269.95378 * 8 7 6 10 10 H 1.07992 * 120.00058 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99830 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99855 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00133 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47131 * 60.00149 * 13 11 9 15 15 H 1.48493 * 109.47296 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.47221 * 300.00462 * 13 11 9 17 17 C 1.39688 * 121.81738 * 359.95366 * 7 6 5 18 18 C 1.35652 * 121.72762 * 0.05193 * 17 7 6 19 19 C 1.41132 * 119.53263 * 359.96950 * 18 17 7 20 20 C 1.33991 * 125.02696 * 270.00625 * 3 2 1 21 21 C 1.50693 * 126.04180 * 359.97438 * 20 3 2 22 22 H 1.09005 * 109.47163 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46999 * 299.99175 * 1 2 3 24 24 H 1.08998 * 109.47473 * 59.99318 * 1 2 3 25 25 H 1.09001 * 109.46999 * 240.00825 * 2 1 3 26 26 H 1.08998 * 109.47473 * 120.00682 * 2 1 3 27 27 H 1.08001 * 120.19981 * 0.05101 * 6 5 4 28 28 H 1.09001 * 109.47312 * 29.94998 * 8 7 6 29 29 H 1.09004 * 109.47342 * 149.95593 * 8 7 6 30 30 H 0.97008 * 120.00024 * 180.02562 * 12 11 9 31 31 H 1.07999 * 119.13823 * 180.02562 * 17 7 6 32 32 H 1.07995 * 120.23208 * 180.02562 * 18 17 7 33 33 H 1.08998 * 109.47464 * 270.02150 * 21 20 3 34 34 H 1.09001 * 109.47631 * 30.02918 * 21 20 3 35 35 H 1.09005 * 109.47056 * 150.02359 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2865 2.1382 1.1462 5 6 2.7099 3.3346 0.7809 6 6 3.1206 4.4956 1.4709 7 6 3.5074 5.5900 0.7694 8 6 3.9442 6.8232 1.5175 9 6 2.7504 7.7087 1.7666 10 1 1.7733 7.4083 1.4184 11 6 2.9057 8.9018 2.4400 12 7 4.0956 9.2673 2.8644 13 14 1.4263 9.9997 2.7481 14 1 0.4210 9.2612 3.5539 15 1 1.8565 11.2148 3.4854 16 1 0.8250 10.3963 1.4494 17 6 3.5136 5.6053 -0.6274 18 6 3.1317 4.5255 -1.3542 19 6 2.7162 3.3515 -0.6902 20 6 2.2746 2.1063 -1.0972 21 6 2.1120 1.6453 -2.5226 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.1270 4.5121 2.5507 28 1 4.3861 6.5325 2.4706 29 1 4.6815 7.3653 0.9254 30 1 4.2048 10.1065 3.3385 31 1 3.8304 6.5003 -1.1421 32 1 3.1463 4.5637 -2.4334 33 1 3.0416 1.1915 -2.8661 34 1 1.3075 0.9118 -2.5778 35 1 1.8690 2.4991 -3.1552 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261200549.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:36 Heat of formation + Delta-G solvation = 55.474316 kcal Electronic energy + Delta-G solvation = -16749.811598 eV Core-core repulsion = 14133.848754 eV Total energy + Delta-G solvation = -2615.962843 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.25838 -38.78719 -35.56174 -34.64418 -33.75947 -31.93030 -30.61770 -28.90503 -27.63584 -25.91327 -24.29529 -22.80037 -21.90841 -20.21565 -18.49946 -17.98201 -17.55259 -16.67017 -16.41312 -15.75781 -15.35898 -15.25395 -14.57821 -14.49158 -14.06655 -13.86541 -13.64960 -13.39393 -13.28882 -13.13022 -12.78290 -12.58882 -12.46011 -12.41418 -12.18327 -12.12173 -11.55764 -11.41774 -11.04844 -10.89705 -10.59215 -9.28155 -8.42421 -8.18324 -6.32310 -0.19953 0.97100 1.39368 1.42947 1.49757 1.51818 1.54986 2.40912 3.03241 3.11229 3.28612 3.60950 3.94754 4.03515 4.09033 4.17196 4.32376 4.38887 4.54147 4.67307 4.74613 4.75773 4.79553 4.87550 5.01327 5.07493 5.20998 5.23896 5.32786 5.41736 5.60515 5.67729 5.76458 6.02829 6.12325 6.13857 6.23498 6.75840 6.79582 7.35477 8.90400 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034871 B = 0.005023 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.764046 B = 5572.783284 C = 5812.112661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.107 3.893 3 N -0.323 5.323 4 N -0.367 5.367 5 C 0.091 3.909 6 C -0.158 4.158 7 C -0.008 4.008 8 C 0.055 3.945 9 C -0.529 4.529 10 H 0.052 0.948 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.966 3.034 14 H -0.273 1.273 15 H -0.277 1.277 16 H -0.264 1.264 17 C -0.170 4.170 18 C -0.027 4.027 19 C -0.243 4.243 20 C 0.124 3.876 21 C -0.089 4.089 22 H 0.111 0.889 23 H 0.037 0.963 24 H 0.067 0.933 25 H 0.138 0.862 26 H 0.098 0.902 27 H 0.097 0.903 28 H -0.001 1.001 29 H 0.014 0.986 30 H 0.266 0.734 31 H 0.124 0.876 32 H 0.162 0.838 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.210 -19.775 -13.996 25.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.098 5.098 4 N -0.195 5.195 5 C -0.060 4.060 6 C -0.179 4.179 7 C -0.012 4.012 8 C 0.018 3.982 9 C -0.567 4.567 10 H 0.070 0.930 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.790 3.210 14 H -0.198 1.198 15 H -0.202 1.202 16 H -0.189 1.189 17 C -0.189 4.189 18 C -0.047 4.047 19 C -0.252 4.252 20 C -0.015 4.015 21 C -0.147 4.147 22 H 0.129 0.871 23 H 0.056 0.944 24 H 0.086 0.914 25 H 0.156 0.844 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.017 0.983 29 H 0.032 0.968 30 H 0.075 0.925 31 H 0.142 0.858 32 H 0.179 0.821 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.457 -20.616 -12.842 25.132 hybrid contribution -0.140 1.582 0.582 1.691 sum -6.597 -19.035 -12.260 23.583 Atomic orbital electron populations 1.22163 0.92903 1.04827 1.02296 1.22315 0.96377 0.75737 1.06781 1.49030 1.44911 1.13019 1.02840 1.77586 1.30728 1.04936 1.06230 1.20967 0.97698 0.92763 0.94572 1.19494 1.08683 0.91495 0.98243 1.19895 0.92538 0.93864 0.94904 1.18185 0.95989 0.90216 0.93791 1.21293 0.94276 1.04395 1.36708 0.93012 1.25916 0.99074 0.99187 0.95050 1.70076 1.24091 1.23603 1.39154 0.85484 0.78921 0.77771 0.78784 1.19807 1.20208 1.18861 1.20588 1.05937 0.99753 0.92642 1.20491 0.94537 0.89490 1.00171 1.19718 1.15933 0.97021 0.92560 1.21905 0.96830 0.90206 0.92581 1.20775 1.05130 1.04031 0.84784 0.87060 0.94412 0.91384 0.84423 0.88390 0.88496 0.98280 0.96803 0.92484 0.85817 0.82087 0.87496 0.88052 0.88082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 10.24 71.98 0.74 -1.39 16 2 C 0.11 1.61 6.66 86.38 0.58 2.19 16 3 N -0.32 -8.80 3.55 -333.04 -1.18 -9.98 16 4 N -0.37 -14.45 12.54 -48.70 -0.61 -15.06 16 5 C 0.09 3.94 7.49 42.16 0.32 4.26 16 6 C -0.16 -7.70 9.65 22.38 0.22 -7.49 16 7 C -0.01 -0.39 5.03 -20.12 -0.10 -0.49 16 8 C 0.06 3.17 5.05 29.10 0.15 3.31 16 9 C -0.53 -31.93 9.09 25.60 0.23 -31.69 16 10 H 0.05 3.10 7.74 -2.91 -0.02 3.08 16 11 C 0.01 0.35 5.46 84.66 0.46 0.81 16 12 N -0.93 -57.80 13.29 21.45 0.28 -57.51 16 13 Si 0.97 45.96 29.54 68.60 2.03 47.99 16 14 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 16 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 17 C -0.17 -7.01 9.51 22.02 0.21 -6.80 16 18 C -0.03 -0.90 10.09 22.38 0.23 -0.67 16 19 C -0.24 -8.45 6.26 -20.23 -0.13 -8.57 16 20 C 0.12 3.10 6.98 42.23 0.29 3.40 16 21 C -0.09 -1.00 9.83 71.23 0.70 -0.30 16 22 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 23 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.14 0.90 7.51 -2.39 -0.02 0.88 16 26 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 28 H 0.00 -0.07 8.06 -2.39 -0.02 -0.09 16 29 H 0.01 0.81 8.07 -2.38 -0.02 0.79 16 30 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 31 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 32 H 0.16 3.68 8.06 -2.91 -0.02 3.65 16 33 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.10 0.59 7.60 -2.39 -0.02 0.57 16 35 H 0.10 0.98 8.14 -2.38 -0.02 0.97 16 Total: -1.00 -79.90 301.89 5.47 -74.43 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: 1.07 Total: 3.58 kcal Atomic # 6 Polarization: -47.33 SS G_CDS: 3.89 Total: -43.44 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -1.51 Total: -82.56 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -79.90 5.47 -74.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261200549.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.905 kcal (2) G-P(sol) polarization free energy of solvation -79.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds