Wall clock time and date at job start Mon Mar 30 2020 06:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47169 * 2 1 4 4 C 1.50697 * 109.47368 * 239.99358 * 2 1 3 5 5 H 1.08005 * 119.99990 * 240.00162 * 4 2 1 6 6 C 1.37868 * 119.99963 * 60.00111 * 4 2 1 7 7 N 1.31516 * 120.00032 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00211 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46707 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47266 * 119.99845 * 8 6 4 11 11 H 1.48502 * 109.46915 * 240.00077 * 8 6 4 12 12 C 1.50713 * 109.47099 * 119.99302 * 2 1 3 13 13 C 1.38125 * 120.03129 * 60.00170 * 12 2 1 14 14 C 1.38264 * 120.06866 * 180.02562 * 13 12 2 15 15 C 1.38315 * 120.14686 * 0.02562 * 14 13 12 16 16 C 1.38081 * 120.07025 * 0.02562 * 15 14 13 17 17 C 1.38871 * 120.03670 * 240.02462 * 12 2 1 18 18 N 1.39849 * 120.07166 * 359.97438 * 17 12 2 19 19 C 1.36444 * 125.84032 * 89.69374 * 18 17 12 20 20 N 1.28268 * 114.54977 * 179.77103 * 19 18 17 21 21 C 1.46965 * 110.19769 * 0.49515 * 20 19 18 22 22 C 1.47289 * 125.84328 * 269.99969 * 18 17 12 23 23 H 1.08997 * 109.46945 * 60.00782 * 1 2 3 24 24 H 1.09010 * 109.47000 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47827 * 300.00305 * 1 2 3 26 26 H 0.97004 * 119.99606 * 180.02562 * 7 6 4 27 27 H 1.07997 * 119.96908 * 0.02562 * 13 12 2 28 28 H 1.08004 * 119.92885 * 180.02562 * 14 13 12 29 29 H 1.08001 * 119.96292 * 179.72475 * 15 14 13 30 30 H 1.08003 * 120.03717 * 180.02562 * 16 15 14 31 31 H 1.08005 * 122.72744 * 359.95906 * 19 18 17 32 32 H 1.09002 * 110.54462 * 241.11905 * 21 20 19 33 33 H 1.09001 * 110.66932 * 118.37331 * 21 20 19 34 34 H 1.09001 * 110.69755 * 298.39520 * 22 18 17 35 35 H 1.09002 * 110.69846 * 61.43662 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1311 6 6 1.6993 -0.2396 -2.4826 7 7 0.9428 0.8294 -2.6034 8 14 2.3214 -1.1208 -4.0078 9 1 3.1465 -2.2873 -3.6034 10 1 1.1662 -1.5872 -4.8159 11 1 3.1467 -0.1878 -4.8164 12 6 2.0323 -0.7103 1.2307 13 6 1.6990 -2.0327 1.4500 14 6 2.1591 -2.6849 2.5790 15 6 2.9536 -2.0160 3.4925 16 6 3.2895 -0.6937 3.2796 17 6 2.8303 -0.0359 2.1454 18 7 3.1696 1.3030 1.9262 19 6 2.4569 2.3872 2.3485 20 7 2.9703 3.5190 2.0310 21 6 4.2113 3.3176 1.2700 22 6 4.3539 1.7840 1.1945 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3635 0.5139 0.8899 26 1 0.7082 1.1604 -3.4845 27 1 1.0785 -2.5578 0.7390 28 1 1.8974 -3.7191 2.7481 29 1 3.3076 -2.5270 4.3756 30 1 3.9102 -0.1720 3.9929 31 1 1.5369 2.2996 2.9075 32 1 5.0588 3.7552 1.7975 33 1 4.1230 3.7433 0.2704 34 1 5.2699 1.4576 1.6871 35 1 4.3321 1.4428 0.1595 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261213363.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:19 Heat of formation + Delta-G solvation = 60.365785 kcal Electronic energy + Delta-G solvation = -17668.885970 eV Core-core repulsion = 15053.135237 eV Total energy + Delta-G solvation = -2615.750733 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.07857 -38.22133 -34.44204 -32.84981 -31.44851 -29.52452 -28.89153 -27.84506 -25.18255 -22.81052 -22.71552 -21.35771 -20.04100 -19.54912 -17.30856 -16.37258 -15.66729 -15.27441 -14.52533 -14.32629 -13.95903 -13.67083 -12.96717 -12.92190 -12.59982 -12.12510 -11.91011 -11.75562 -11.50136 -11.30707 -11.17318 -10.97203 -10.79553 -10.75301 -10.32105 -10.10582 -9.58821 -9.47886 -9.05394 -8.42295 -8.30862 -7.90393 -7.46299 -6.05812 -4.13260 1.74447 1.98167 3.01971 3.24109 3.32921 3.36354 3.60100 4.23937 4.40567 4.95412 5.12821 5.24779 5.35173 5.44435 5.46754 5.61694 5.85062 5.94210 5.96169 6.13944 6.23073 6.36840 6.44952 6.54520 6.75364 6.81166 6.88542 6.94821 7.09514 7.13286 7.22677 7.47299 7.66624 7.91810 8.03217 8.22454 8.32951 8.39061 8.89538 9.51482 10.99437 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017643 B = 0.009897 C = 0.007480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.607675 B = 2828.441862 C = 3742.470330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.070 3.930 3 H 0.043 0.957 4 C -0.508 4.508 5 H 0.056 0.944 6 C 0.063 3.937 7 N -0.886 5.886 8 Si 0.890 3.110 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.025 4.025 13 C -0.107 4.107 14 C -0.119 4.119 15 C -0.143 4.143 16 C -0.117 4.117 17 C 0.128 3.872 18 N -0.587 5.587 19 C 0.364 3.636 20 N -0.589 5.589 21 C 0.027 3.973 22 C 0.081 3.919 23 H 0.086 0.914 24 H 0.028 0.972 25 H 0.007 0.993 26 H 0.260 0.740 27 H 0.126 0.874 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.178 0.822 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.646 -2.513 9.460 10.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.052 3.948 3 H 0.061 0.939 4 C -0.546 4.546 5 H 0.074 0.926 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.718 3.282 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.026 4.026 13 C -0.126 4.126 14 C -0.137 4.137 15 C -0.162 4.162 16 C -0.137 4.137 17 C 0.037 3.963 18 N -0.304 5.304 19 C 0.067 3.933 20 N -0.316 5.316 21 C -0.103 4.103 22 C -0.042 4.042 23 H 0.104 0.896 24 H 0.047 0.953 25 H 0.026 0.974 26 H 0.070 0.930 27 H 0.144 0.856 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.195 0.805 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.511 -1.490 9.354 10.102 hybrid contribution 0.653 -1.358 -1.172 1.909 sum 4.164 -2.848 8.182 9.612 Atomic orbital electron populations 1.21780 0.97609 0.99181 1.00279 1.17892 0.92728 0.96086 0.88097 0.93929 1.21094 1.31384 1.12340 0.89811 0.92588 1.24943 0.95046 0.94955 0.98878 1.69901 1.36429 1.22744 1.23330 0.86563 0.78706 0.79754 0.83183 1.19777 1.20962 1.21026 1.21057 0.92242 0.93814 0.95511 1.21045 1.00329 0.94357 0.96846 1.21174 0.98212 0.99442 0.94904 1.20775 1.01087 0.94370 0.99949 1.21211 1.00474 0.94904 0.97101 1.17211 1.00594 0.83247 0.95234 1.45191 1.24842 1.02984 1.57417 1.24589 0.94866 0.82855 0.91006 1.74179 1.11597 1.22716 1.23068 1.23004 0.94603 0.92951 0.99737 1.22695 0.87995 0.95461 0.98071 0.89584 0.95322 0.97428 0.92966 0.85598 0.86747 0.86754 0.86877 0.80516 0.90595 0.89941 0.91822 0.89942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.78 37.15 0.33 -2.76 16 2 C 0.07 1.70 2.43 -92.92 -0.23 1.47 16 3 H 0.04 1.13 6.64 -51.93 -0.34 0.79 16 4 C -0.51 -13.41 8.24 -34.44 -0.28 -13.69 16 5 H 0.06 1.49 7.60 -52.48 -0.40 1.09 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.79 11.32 55.43 0.63 -24.16 16 8 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C -0.02 -0.51 4.75 -104.42 -0.50 -1.00 16 13 C -0.11 -1.99 8.71 -39.61 -0.34 -2.34 16 14 C -0.12 -1.83 10.04 -39.54 -0.40 -2.23 16 15 C -0.14 -2.07 10.04 -39.61 -0.40 -2.46 16 16 C -0.12 -1.84 9.97 -39.39 -0.39 -2.23 16 17 C 0.13 2.36 5.75 -83.72 -0.48 1.88 16 18 N -0.59 -10.61 1.81 -114.78 -0.21 -10.82 16 19 C 0.36 6.37 11.89 -90.90 -1.08 5.29 16 20 N -0.59 -10.83 11.60 -61.71 -0.72 -11.55 16 21 C 0.03 0.44 8.05 -3.15 -0.03 0.42 16 22 C 0.08 1.39 7.62 -2.98 -0.02 1.36 16 23 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 24 H 0.03 0.63 7.39 -51.92 -0.38 0.25 16 25 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 26 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.13 2.38 7.58 -52.49 -0.40 1.98 16 28 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 29 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 31 H 0.18 2.66 8.06 -52.48 -0.42 2.24 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 LS Contribution 293.71 15.07 4.43 4.43 Total: -1.00 -28.70 293.71 -9.59 -38.29 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -4.78 Total: 2.62 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -3.92 Total: -14.69 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.30 Total: -46.53 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.70 -9.59 -38.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261213363.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.655 kcal (2) G-P(sol) polarization free energy of solvation -28.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds