Wall clock time and date at job start Mon Mar 30 2020 06:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47169 * 2 1 4 4 C 1.50697 * 109.47368 * 239.99358 * 2 1 3 5 5 H 1.08005 * 119.99990 * 240.00162 * 4 2 1 6 6 C 1.37868 * 119.99963 * 60.00111 * 4 2 1 7 7 N 1.31516 * 120.00032 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00211 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46707 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47266 * 119.99845 * 8 6 4 11 11 H 1.48502 * 109.46915 * 240.00077 * 8 6 4 12 12 C 1.50713 * 109.47099 * 119.99302 * 2 1 3 13 13 C 1.38125 * 120.03129 * 60.00170 * 12 2 1 14 14 C 1.38264 * 120.06866 * 180.02562 * 13 12 2 15 15 C 1.38315 * 120.14686 * 0.02562 * 14 13 12 16 16 C 1.38081 * 120.07025 * 0.02562 * 15 14 13 17 17 C 1.38871 * 120.03670 * 240.02462 * 12 2 1 18 18 N 1.39849 * 120.07166 * 359.97438 * 17 12 2 19 19 C 1.36444 * 125.84032 * 89.69374 * 18 17 12 20 20 N 1.28268 * 114.54977 * 179.77103 * 19 18 17 21 21 C 1.46965 * 110.19769 * 0.49515 * 20 19 18 22 22 C 1.47289 * 125.84328 * 269.99969 * 18 17 12 23 23 H 1.08997 * 109.46945 * 60.00782 * 1 2 3 24 24 H 1.09010 * 109.47000 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47827 * 300.00305 * 1 2 3 26 26 H 0.97004 * 119.99606 * 180.02562 * 7 6 4 27 27 H 1.07997 * 119.96908 * 0.02562 * 13 12 2 28 28 H 1.08004 * 119.92885 * 180.02562 * 14 13 12 29 29 H 1.08001 * 119.96292 * 179.72475 * 15 14 13 30 30 H 1.08003 * 120.03717 * 180.02562 * 16 15 14 31 31 H 1.08005 * 122.72744 * 359.95906 * 19 18 17 32 32 H 1.09002 * 110.54462 * 241.11905 * 21 20 19 33 33 H 1.09001 * 110.66932 * 118.37331 * 21 20 19 34 34 H 1.09001 * 110.69755 * 298.39520 * 22 18 17 35 35 H 1.09002 * 110.69846 * 61.43662 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1311 6 6 1.6993 -0.2396 -2.4826 7 7 0.9428 0.8294 -2.6034 8 14 2.3214 -1.1208 -4.0078 9 1 3.1465 -2.2873 -3.6034 10 1 1.1662 -1.5872 -4.8159 11 1 3.1467 -0.1878 -4.8164 12 6 2.0323 -0.7103 1.2307 13 6 1.6990 -2.0327 1.4500 14 6 2.1591 -2.6849 2.5790 15 6 2.9536 -2.0160 3.4925 16 6 3.2895 -0.6937 3.2796 17 6 2.8303 -0.0359 2.1454 18 7 3.1696 1.3030 1.9262 19 6 2.4569 2.3872 2.3485 20 7 2.9703 3.5190 2.0310 21 6 4.2113 3.3176 1.2700 22 6 4.3539 1.7840 1.1945 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3635 0.5139 0.8899 26 1 0.7082 1.1604 -3.4845 27 1 1.0785 -2.5578 0.7390 28 1 1.8974 -3.7191 2.7481 29 1 3.3076 -2.5270 4.3756 30 1 3.9102 -0.1720 3.9929 31 1 1.5369 2.2996 2.9075 32 1 5.0588 3.7552 1.7975 33 1 4.1230 3.7433 0.2704 34 1 5.2699 1.4576 1.6871 35 1 4.3321 1.4428 0.1595 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261213363.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:19 Heat of formation + Delta-G solvation = 45.952706 kcal Electronic energy + Delta-G solvation = -17669.510968 eV Core-core repulsion = 15053.135237 eV Total energy + Delta-G solvation = -2616.375731 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.44997 -39.57961 -36.24982 -34.21669 -33.27102 -30.88378 -30.31819 -29.32536 -27.23315 -24.38205 -24.04687 -22.72133 -21.55798 -21.03264 -18.64635 -18.32049 -17.10283 -16.88567 -16.15725 -15.72241 -15.32899 -15.07517 -14.65051 -14.37424 -14.20294 -13.66697 -13.33118 -13.23185 -13.08684 -12.94481 -12.76014 -12.60989 -12.48901 -12.33038 -12.17731 -11.86932 -11.19277 -11.01084 -10.93943 -10.48300 -9.60787 -9.32948 -8.84822 -8.11540 -6.25279 0.44259 0.66273 1.35642 1.38601 1.48894 1.65181 2.26761 2.39402 2.95377 3.16756 3.63134 3.82408 4.11564 4.17498 4.25837 4.36119 4.47206 4.61205 4.65258 4.80438 4.87081 4.88004 4.99375 5.00001 5.11944 5.23324 5.34418 5.48233 5.53047 5.62978 5.67846 5.73031 6.03744 6.09050 6.15271 6.35104 6.84499 6.85936 7.02935 7.42484 8.92397 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017643 B = 0.009897 C = 0.007480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.607675 B = 2828.441862 C = 3742.470330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.077 3.923 3 H 0.009 0.991 4 C -0.515 4.515 5 H 0.049 0.951 6 C 0.015 3.985 7 N -0.915 5.915 8 Si 0.949 3.051 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.284 1.284 12 C -0.058 4.058 13 C -0.124 4.124 14 C -0.110 4.110 15 C -0.126 4.126 16 C -0.110 4.110 17 C 0.115 3.885 18 N -0.591 5.591 19 C 0.359 3.641 20 N -0.612 5.612 21 C 0.029 3.971 22 C 0.083 3.917 23 H 0.054 0.946 24 H 0.032 0.968 25 H 0.021 0.979 26 H 0.259 0.741 27 H 0.112 0.888 28 H 0.148 0.852 29 H 0.157 0.843 30 H 0.137 0.863 31 H 0.197 0.803 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.781 -4.144 11.541 13.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.059 3.941 3 H 0.027 0.973 4 C -0.553 4.553 5 H 0.067 0.933 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.775 3.225 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.210 1.210 12 C -0.060 4.060 13 C -0.142 4.142 14 C -0.128 4.128 15 C -0.144 4.144 16 C -0.130 4.130 17 C 0.024 3.976 18 N -0.308 5.308 19 C 0.063 3.937 20 N -0.339 5.339 21 C -0.101 4.101 22 C -0.040 4.040 23 H 0.073 0.927 24 H 0.051 0.949 25 H 0.040 0.960 26 H 0.069 0.931 27 H 0.130 0.870 28 H 0.166 0.834 29 H 0.175 0.825 30 H 0.155 0.845 31 H 0.213 0.787 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.650 -3.133 11.441 12.741 hybrid contribution 0.306 -0.884 -1.754 1.988 sum 4.956 -4.017 9.687 11.599 Atomic orbital electron populations 1.21617 0.97801 0.99075 0.99347 1.17618 0.92589 0.94427 0.89515 0.97292 1.21371 1.30822 1.12002 0.91147 0.93315 1.25674 0.95368 0.95654 1.01661 1.70038 1.37655 1.24085 1.23712 0.85637 0.78225 0.78762 0.79858 1.19147 1.20521 1.20983 1.20798 0.94961 0.94964 0.95256 1.21033 1.01150 0.93757 0.98284 1.21497 0.97120 1.00832 0.93367 1.21263 0.99004 0.93661 1.00483 1.21457 0.99925 0.95509 0.96103 1.17394 1.00823 0.83367 0.95999 1.45303 1.25022 1.03216 1.57279 1.24948 0.95274 0.82606 0.90881 1.74151 1.12516 1.23362 1.23887 1.23040 0.95048 0.92623 0.99356 1.22667 0.89007 0.95836 0.96522 0.92670 0.94868 0.96007 0.93144 0.86998 0.83428 0.82510 0.84530 0.78652 0.87893 0.91241 0.89230 0.93362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.88 8.78 71.98 0.63 -5.25 16 2 C 0.08 3.84 2.43 -12.29 -0.03 3.81 16 3 H 0.01 0.50 6.64 -2.39 -0.02 0.48 16 4 C -0.52 -28.00 8.24 25.60 0.21 -27.79 16 5 H 0.05 2.65 7.60 -2.91 -0.02 2.63 16 6 C 0.02 0.83 5.30 84.65 0.45 1.28 16 7 N -0.92 -53.13 11.32 21.44 0.24 -52.88 16 8 Si 0.95 43.69 29.54 68.60 2.03 45.72 16 9 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 C -0.06 -2.39 4.75 -19.74 -0.09 -2.48 16 13 C -0.12 -4.46 8.71 22.25 0.19 -4.27 16 14 C -0.11 -2.99 10.04 22.29 0.22 -2.77 16 15 C -0.13 -3.01 10.04 22.25 0.22 -2.79 16 16 C -0.11 -3.07 9.97 22.39 0.22 -2.85 16 17 C 0.11 4.10 5.75 38.18 0.22 4.32 16 18 N -0.59 -21.11 1.81 -517.05 -0.94 -22.05 16 19 C 0.36 12.47 11.89 180.45 2.15 14.61 16 20 N -0.61 -22.40 11.60 -349.13 -4.05 -26.45 16 21 C 0.03 0.95 8.05 86.70 0.70 1.65 16 22 C 0.08 2.85 7.62 86.64 0.66 3.51 16 23 H 0.05 3.01 6.07 -2.39 -0.01 3.00 16 24 H 0.03 1.52 7.39 -2.38 -0.02 1.50 16 25 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 27 H 0.11 4.24 7.58 -2.91 -0.02 4.22 16 28 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 29 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 30 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 31 H 0.20 5.76 8.06 -2.91 -0.02 5.74 16 32 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -63.70 293.71 4.11 -59.60 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 1.07 Total: 15.08 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: 5.76 Total: -19.01 kcal Atomic # 7 Polarization: -96.64 SS G_CDS: -4.74 Total: -101.38 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -63.70 4.11 -59.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261213363.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.548 kcal (2) G-P(sol) polarization free energy of solvation -63.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds