Wall clock time and date at job start Mon Mar 30 2020 06:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47316 * 2 1 4 4 C 1.50707 * 109.47301 * 120.00370 * 2 1 3 5 5 H 1.08004 * 119.99786 * 120.00188 * 4 2 1 6 6 C 1.37873 * 119.99757 * 299.99732 * 4 2 1 7 7 N 1.31517 * 120.00210 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00037 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47130 * 90.00105 * 8 6 4 10 10 H 1.48498 * 109.47653 * 210.00112 * 8 6 4 11 11 H 1.48501 * 109.47172 * 330.00853 * 8 6 4 12 12 C 1.50700 * 109.47222 * 240.00300 * 2 1 3 13 13 C 1.38136 * 120.03427 * 299.98028 * 12 2 1 14 14 C 1.38264 * 120.06862 * 180.02562 * 13 12 2 15 15 C 1.38314 * 120.14816 * 359.97438 * 14 13 12 16 16 C 1.38085 * 120.06914 * 0.02562 * 15 14 13 17 17 C 1.38870 * 120.04059 * 119.99875 * 12 2 1 18 18 N 1.39851 * 120.06913 * 359.95603 * 17 12 2 19 19 C 1.36443 * 125.84448 * 89.71537 * 18 17 12 20 20 N 1.28256 * 114.55353 * 179.81704 * 19 18 17 21 21 C 1.46969 * 110.19941 * 0.44868 * 20 19 18 22 22 C 1.47292 * 125.84094 * 270.02590 * 18 17 12 23 23 H 1.08997 * 109.47613 * 59.99600 * 1 2 3 24 24 H 1.09005 * 109.46817 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47168 * 299.99300 * 1 2 3 26 26 H 0.97003 * 120.00187 * 179.97438 * 7 6 4 27 27 H 1.07987 * 119.96407 * 359.97438 * 13 12 2 28 28 H 1.07996 * 119.92579 * 179.97438 * 14 13 12 29 29 H 1.07997 * 119.95883 * 180.28483 * 15 14 13 30 30 H 1.07997 * 120.03033 * 179.97438 * 16 15 14 31 31 H 1.08003 * 122.71947 * 359.97438 * 19 18 17 32 32 H 1.08998 * 110.54896 * 241.14701 * 21 20 19 33 33 H 1.09004 * 110.66389 * 118.39728 * 21 20 19 34 34 H 1.08997 * 110.69481 * 298.36904 * 22 18 17 35 35 H 1.08999 * 110.69984 * 61.40887 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6035 8 14 2.3214 -1.1205 4.0079 9 1 3.6298 -0.5461 4.4123 10 1 1.3433 -0.9495 5.1120 11 1 2.4860 -2.5664 3.7118 12 6 2.0323 -0.7103 -1.2305 13 6 1.6994 -2.0329 -1.4497 14 6 2.1603 -2.6855 -2.5781 15 6 2.9554 -2.0168 -3.4912 16 6 3.2919 -0.6946 -3.2780 17 6 2.8307 -0.0362 -2.1451 18 7 3.1692 1.3030 -1.9265 19 6 4.2627 1.7495 -1.2434 20 7 4.3647 3.0263 -1.1767 21 6 3.2342 3.6625 -1.8675 22 6 2.4028 2.4728 -2.3887 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 0.7082 1.1607 3.4845 27 1 1.0792 -2.5580 -0.7385 28 1 1.8990 -3.7197 -2.7469 29 1 3.3100 -2.5281 -4.3739 30 1 3.9130 -0.1732 -3.9911 31 1 4.9851 1.0819 -0.7975 32 1 3.5881 4.2746 -2.6970 33 1 2.6478 4.2637 -1.1725 34 1 2.3456 2.4903 -3.4770 35 1 1.4042 2.4764 -1.9517 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261213364.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:24 Heat of formation + Delta-G solvation = 60.667297 kcal Electronic energy + Delta-G solvation = -17664.534560 eV Core-core repulsion = 15048.796901 eV Total energy + Delta-G solvation = -2615.737659 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.07893 -38.21977 -34.43625 -32.84336 -31.43513 -29.54198 -28.90597 -27.83636 -25.17326 -22.80287 -22.72997 -21.39324 -19.98162 -19.56909 -17.30258 -16.37366 -15.66906 -15.27875 -14.51905 -14.34527 -13.97950 -13.67251 -12.95878 -12.86212 -12.66386 -12.07696 -11.94050 -11.79976 -11.50342 -11.29942 -11.20845 -10.94268 -10.80323 -10.71526 -10.32079 -10.10596 -9.56279 -9.46712 -9.06598 -8.39693 -8.30884 -7.90322 -7.47092 -6.04153 -4.11304 1.74473 1.98140 3.07367 3.28281 3.35362 3.37644 3.59804 4.24118 4.42548 4.95075 5.16721 5.27111 5.33536 5.41743 5.44694 5.60985 5.75942 5.89986 5.96033 6.13604 6.21556 6.27990 6.46936 6.54629 6.73911 6.80916 6.88374 6.93455 7.08700 7.12541 7.22774 7.46605 7.67085 7.92059 8.02947 8.22869 8.33659 8.43060 8.90929 9.53588 11.01464 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017640 B = 0.009903 C = 0.007484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.911031 B = 2826.863482 C = 3740.576174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.071 3.929 3 H 0.042 0.958 4 C -0.509 4.509 5 H 0.056 0.944 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.891 3.109 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 C -0.025 4.025 13 C -0.107 4.107 14 C -0.119 4.119 15 C -0.143 4.143 16 C -0.117 4.117 17 C 0.128 3.872 18 N -0.589 5.589 19 C 0.372 3.628 20 N -0.590 5.590 21 C 0.027 3.973 22 C 0.081 3.919 23 H 0.005 0.995 24 H 0.028 0.972 25 H 0.086 0.914 26 H 0.261 0.739 27 H 0.126 0.874 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.180 0.820 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.936 -1.918 -10.548 10.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.052 3.948 3 H 0.060 0.940 4 C -0.547 4.547 5 H 0.075 0.925 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.719 3.281 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 C -0.026 4.026 13 C -0.126 4.126 14 C -0.137 4.137 15 C -0.162 4.162 16 C -0.137 4.137 17 C 0.037 3.963 18 N -0.307 5.307 19 C 0.076 3.924 20 N -0.316 5.316 21 C -0.103 4.103 22 C -0.042 4.042 23 H 0.024 0.976 24 H 0.047 0.953 25 H 0.104 0.896 26 H 0.071 0.929 27 H 0.144 0.856 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.197 0.803 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.324 -1.080 -10.116 10.435 hybrid contribution -0.405 -0.977 0.537 1.186 sum 1.920 -2.058 -9.579 9.984 Atomic orbital electron populations 1.21785 0.97728 0.99218 1.00114 1.17881 0.92636 0.96107 0.88128 0.93967 1.21050 1.31479 1.12376 0.89776 0.92549 1.24935 0.94964 0.94936 0.98909 1.69878 1.36422 1.22789 1.23442 0.86599 0.78698 0.80054 0.82720 1.20599 1.21242 1.19890 1.21059 0.92108 0.93870 0.95599 1.21048 1.00324 0.94355 0.96848 1.21172 0.98203 0.99441 0.94912 1.20776 1.01059 0.94403 0.99942 1.21209 1.00537 0.94947 0.96989 1.17208 1.00821 0.82881 0.95358 1.45206 1.24939 1.03306 1.57202 1.24626 0.87616 0.92813 0.87355 1.74203 1.24397 1.05472 1.27538 1.23005 0.92416 0.96566 0.98323 1.22652 0.96778 0.85841 0.98910 0.97629 0.95284 0.89579 0.92935 0.85597 0.86747 0.86751 0.86868 0.80287 0.90568 0.90049 0.91739 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.78 37.16 0.33 -2.76 16 2 C 0.07 1.71 2.43 -92.92 -0.23 1.49 16 3 H 0.04 1.12 6.64 -51.93 -0.34 0.78 16 4 C -0.51 -13.45 8.24 -34.44 -0.28 -13.74 16 5 H 0.06 1.49 7.60 -52.48 -0.40 1.09 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.95 11.32 55.43 0.63 -24.33 16 8 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 C -0.02 -0.51 4.75 -104.43 -0.50 -1.01 16 13 C -0.11 -1.99 8.71 -39.61 -0.34 -2.34 16 14 C -0.12 -1.83 10.04 -39.54 -0.40 -2.23 16 15 C -0.14 -2.06 10.04 -39.61 -0.40 -2.46 16 16 C -0.12 -1.84 9.97 -39.39 -0.39 -2.23 16 17 C 0.13 2.37 5.75 -83.72 -0.48 1.88 16 18 N -0.59 -10.65 1.81 -114.79 -0.21 -10.86 16 19 C 0.37 6.85 11.89 -90.91 -1.08 5.76 16 20 N -0.59 -11.14 11.60 -61.71 -0.72 -11.85 16 21 C 0.03 0.43 8.05 -3.15 -0.03 0.41 16 22 C 0.08 1.33 7.62 -2.97 -0.02 1.30 16 23 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 24 H 0.03 0.64 7.39 -51.93 -0.38 0.26 16 25 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 27 H 0.13 2.38 7.58 -52.49 -0.40 1.99 16 28 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 29 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 31 H 0.18 3.01 8.06 -52.48 -0.42 2.58 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 293.71 15.07 4.43 4.43 Total: -1.00 -28.83 293.71 -9.59 -38.42 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -4.78 Total: 2.44 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -3.92 Total: -14.28 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -0.30 Total: -47.04 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.83 -9.59 -38.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261213364.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.086 kcal (2) G-P(sol) polarization free energy of solvation -28.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds