Wall clock time and date at job start Mon Mar 30 2020 06:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47316 * 2 1 4 4 C 1.50707 * 109.47301 * 120.00370 * 2 1 3 5 5 H 1.08004 * 119.99786 * 120.00188 * 4 2 1 6 6 C 1.37873 * 119.99757 * 299.99732 * 4 2 1 7 7 N 1.31517 * 120.00210 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00037 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47130 * 90.00105 * 8 6 4 10 10 H 1.48498 * 109.47653 * 210.00112 * 8 6 4 11 11 H 1.48501 * 109.47172 * 330.00853 * 8 6 4 12 12 C 1.50700 * 109.47222 * 240.00300 * 2 1 3 13 13 C 1.38136 * 120.03427 * 299.98028 * 12 2 1 14 14 C 1.38264 * 120.06862 * 180.02562 * 13 12 2 15 15 C 1.38314 * 120.14816 * 359.97438 * 14 13 12 16 16 C 1.38085 * 120.06914 * 0.02562 * 15 14 13 17 17 C 1.38870 * 120.04059 * 119.99875 * 12 2 1 18 18 N 1.39851 * 120.06913 * 359.95603 * 17 12 2 19 19 C 1.36443 * 125.84448 * 89.71537 * 18 17 12 20 20 N 1.28256 * 114.55353 * 179.81704 * 19 18 17 21 21 C 1.46969 * 110.19941 * 0.44868 * 20 19 18 22 22 C 1.47292 * 125.84094 * 270.02590 * 18 17 12 23 23 H 1.08997 * 109.47613 * 59.99600 * 1 2 3 24 24 H 1.09005 * 109.46817 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47168 * 299.99300 * 1 2 3 26 26 H 0.97003 * 120.00187 * 179.97438 * 7 6 4 27 27 H 1.07987 * 119.96407 * 359.97438 * 13 12 2 28 28 H 1.07996 * 119.92579 * 179.97438 * 14 13 12 29 29 H 1.07997 * 119.95883 * 180.28483 * 15 14 13 30 30 H 1.07997 * 120.03033 * 179.97438 * 16 15 14 31 31 H 1.08003 * 122.71947 * 359.97438 * 19 18 17 32 32 H 1.08998 * 110.54896 * 241.14701 * 21 20 19 33 33 H 1.09004 * 110.66389 * 118.39728 * 21 20 19 34 34 H 1.08997 * 110.69481 * 298.36904 * 22 18 17 35 35 H 1.08999 * 110.69984 * 61.40887 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6035 8 14 2.3214 -1.1205 4.0079 9 1 3.6298 -0.5461 4.4123 10 1 1.3433 -0.9495 5.1120 11 1 2.4860 -2.5664 3.7118 12 6 2.0323 -0.7103 -1.2305 13 6 1.6994 -2.0329 -1.4497 14 6 2.1603 -2.6855 -2.5781 15 6 2.9554 -2.0168 -3.4912 16 6 3.2919 -0.6946 -3.2780 17 6 2.8307 -0.0362 -2.1451 18 7 3.1692 1.3030 -1.9265 19 6 4.2627 1.7495 -1.2434 20 7 4.3647 3.0263 -1.1767 21 6 3.2342 3.6625 -1.8675 22 6 2.4028 2.4728 -2.3887 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 0.7082 1.1607 3.4845 27 1 1.0792 -2.5580 -0.7385 28 1 1.8990 -3.7197 -2.7469 29 1 3.3100 -2.5281 -4.3739 30 1 3.9130 -0.1732 -3.9911 31 1 4.9851 1.0819 -0.7975 32 1 3.5881 4.2746 -2.6970 33 1 2.6478 4.2637 -1.1725 34 1 2.3456 2.4903 -3.4770 35 1 1.4042 2.4764 -1.9517 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261213364.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:23 Heat of formation + Delta-G solvation = 46.180164 kcal Electronic energy + Delta-G solvation = -17665.162769 eV Core-core repulsion = 15048.796901 eV Total energy + Delta-G solvation = -2616.365868 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.44833 -39.57847 -36.24503 -34.21335 -33.26149 -30.87838 -30.33316 -29.31493 -27.22749 -24.37455 -24.04510 -22.74861 -21.50578 -21.06357 -18.64315 -18.31320 -17.08820 -16.87979 -16.15676 -15.71993 -15.36327 -15.05554 -14.63295 -14.37950 -14.22851 -13.65158 -13.29686 -13.25798 -13.07988 -12.89342 -12.79606 -12.66631 -12.46393 -12.30324 -12.15682 -11.87155 -11.18777 -11.01113 -10.93484 -10.46370 -9.60691 -9.32793 -8.84416 -8.10424 -6.23716 0.44529 0.66314 1.38992 1.40682 1.49675 1.66116 2.27158 2.41378 2.95112 3.18634 3.63456 3.84270 4.11170 4.17489 4.25948 4.36170 4.43781 4.61454 4.65214 4.79844 4.86197 4.87177 4.95964 4.99432 5.12370 5.24271 5.34546 5.46883 5.54061 5.63303 5.67618 5.73283 6.02162 6.09282 6.15034 6.35631 6.84717 6.85956 7.04819 7.44147 8.93702 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017640 B = 0.009903 C = 0.007484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.911031 B = 2826.863482 C = 3740.576174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.077 3.923 3 H 0.009 0.991 4 C -0.515 4.515 5 H 0.052 0.948 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.949 3.051 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.265 1.265 12 C -0.058 4.058 13 C -0.123 4.123 14 C -0.110 4.110 15 C -0.126 4.126 16 C -0.111 4.111 17 C 0.115 3.885 18 N -0.592 5.592 19 C 0.364 3.636 20 N -0.615 5.615 21 C 0.027 3.973 22 C 0.083 3.917 23 H 0.017 0.983 24 H 0.032 0.968 25 H 0.055 0.945 26 H 0.259 0.741 27 H 0.112 0.888 28 H 0.148 0.852 29 H 0.157 0.843 30 H 0.137 0.863 31 H 0.187 0.813 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.935 -3.520 -12.679 13.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.059 3.941 3 H 0.027 0.973 4 C -0.553 4.553 5 H 0.070 0.930 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.775 3.225 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.189 1.189 12 C -0.060 4.060 13 C -0.142 4.142 14 C -0.128 4.128 15 C -0.144 4.144 16 C -0.130 4.130 17 C 0.024 3.976 18 N -0.310 5.310 19 C 0.067 3.933 20 N -0.342 5.342 21 C -0.103 4.103 22 C -0.040 4.040 23 H 0.036 0.964 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.130 0.870 28 H 0.166 0.834 29 H 0.175 0.825 30 H 0.155 0.845 31 H 0.204 0.796 32 H 0.122 0.878 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.320 -2.694 -12.257 12.981 hybrid contribution -0.716 -0.501 1.125 1.425 sum 2.604 -3.194 -11.132 11.870 Atomic orbital electron populations 1.21615 0.97977 0.99056 0.99119 1.17610 0.92456 0.94465 0.89578 0.97316 1.21357 1.30870 1.12096 0.91024 0.92992 1.25680 0.95323 0.95652 1.01724 1.70020 1.37699 1.24163 1.23750 0.85682 0.77955 0.79383 0.79436 1.20573 1.21071 1.18924 1.20797 0.94855 0.95005 0.95346 1.21033 1.01134 0.93761 0.98288 1.21494 0.97117 1.00829 0.93377 1.21263 0.98976 0.93690 1.00471 1.21456 0.99971 0.95559 0.96012 1.17393 1.01013 0.83035 0.96113 1.45320 1.24824 1.03721 1.57091 1.24815 0.88087 0.92970 0.87413 1.74162 1.25802 1.05950 1.28277 1.23081 0.91708 0.96659 0.98808 1.22702 0.95536 0.85368 1.00368 0.96435 0.94861 0.92576 0.93195 0.87005 0.83431 0.82510 0.84528 0.79625 0.87846 0.91006 0.88838 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.86 8.78 71.98 0.63 -5.23 16 2 C 0.08 3.86 2.43 -12.28 -0.03 3.83 16 3 H 0.01 0.49 6.64 -2.39 -0.02 0.47 16 4 C -0.52 -27.93 8.24 25.60 0.21 -27.72 16 5 H 0.05 2.79 7.60 -2.91 -0.02 2.77 16 6 C 0.01 0.82 5.30 84.65 0.45 1.27 16 7 N -0.92 -53.39 11.32 21.45 0.24 -53.15 16 8 Si 0.95 43.86 29.54 68.60 2.03 45.88 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 12 C -0.06 -2.40 4.75 -19.74 -0.09 -2.49 16 13 C -0.12 -4.46 8.71 22.25 0.19 -4.26 16 14 C -0.11 -2.99 10.04 22.29 0.22 -2.76 16 15 C -0.13 -3.01 10.04 22.25 0.22 -2.78 16 16 C -0.11 -3.07 9.97 22.39 0.22 -2.85 16 17 C 0.12 4.11 5.75 38.17 0.22 4.33 16 18 N -0.59 -21.16 1.81 -517.07 -0.94 -22.09 16 19 C 0.36 13.39 11.89 180.45 2.15 15.54 16 20 N -0.61 -23.25 11.60 -349.13 -4.05 -27.30 16 21 C 0.03 0.86 8.05 86.70 0.70 1.56 16 22 C 0.08 2.67 7.62 86.64 0.66 3.33 16 23 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.03 1.53 7.39 -2.38 -0.02 1.51 16 25 H 0.06 3.06 6.07 -2.39 -0.01 3.05 16 26 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 27 H 0.11 4.24 7.58 -2.92 -0.02 4.22 16 28 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 29 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 30 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 31 H 0.19 6.31 8.06 -2.91 -0.02 6.28 16 32 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -63.71 293.71 4.11 -59.60 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 1.07 Total: 15.31 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 5.76 Total: -18.24 kcal Atomic # 7 Polarization: -97.80 SS G_CDS: -4.74 Total: -102.54 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -63.71 4.11 -59.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261213364.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.778 kcal (2) G-P(sol) polarization free energy of solvation -63.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds