Wall clock time and date at job start Mon Mar 30 2020 06:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47711 * 2 1 4 4 C 1.50697 * 109.47323 * 239.99128 * 2 1 3 5 5 H 1.08002 * 120.00599 * 240.00782 * 4 2 1 6 6 C 1.37880 * 119.99675 * 60.00315 * 4 2 1 7 7 N 1.31517 * 120.00210 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00019 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46845 * 269.99914 * 8 6 4 10 10 H 1.48503 * 109.47399 * 29.99403 * 8 6 4 11 11 H 1.48498 * 109.47295 * 150.00010 * 8 6 4 12 12 C 1.50707 * 109.46640 * 119.99870 * 2 1 3 13 13 C 1.38285 * 119.92885 * 59.72474 * 12 2 1 14 14 C 1.38107 * 120.07094 * 179.77045 * 13 12 2 15 15 C 1.38898 * 119.92534 * 0.50098 * 14 13 12 16 16 N 1.39851 * 120.06975 * 179.77216 * 15 14 13 17 17 C 1.36439 * 125.83897 * 179.67120 * 16 15 14 18 18 N 1.28266 * 114.54905 * 179.77352 * 17 16 15 19 19 C 1.46974 * 110.19872 * 0.49567 * 18 17 16 20 20 C 1.47291 * 125.84306 * 359.97438 * 16 15 14 21 21 C 1.38888 * 119.85621 * 359.74975 * 15 14 13 22 22 C 1.38109 * 119.92622 * 359.97438 * 21 15 14 23 23 H 1.08998 * 109.47206 * 300.00454 * 1 2 3 24 24 H 1.09006 * 109.46667 * 60.00472 * 1 2 3 25 25 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 26 26 H 0.96998 * 119.99640 * 180.02562 * 7 6 4 27 27 H 1.08003 * 119.96263 * 0.02562 * 13 12 2 28 28 H 1.08004 * 120.03620 * 180.23336 * 14 13 12 29 29 H 1.07995 * 122.73030 * 359.97438 * 17 16 15 30 30 H 1.09001 * 110.54066 * 241.12099 * 19 18 17 31 31 H 1.09000 * 110.66728 * 118.37457 * 19 18 17 32 32 H 1.09007 * 110.69511 * 298.39678 * 20 16 15 33 33 H 1.09000 * 110.69688 * 61.60700 * 20 16 15 34 34 H 1.08003 * 120.03433 * 179.97438 * 21 15 14 35 35 H 1.08000 * 119.95920 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 2.1381 -0.8594 -3.5564 8 14 0.6260 1.2796 -2.6542 9 1 -0.8019 0.8743 -2.6994 10 1 0.8492 2.1772 -1.4924 11 1 0.9773 1.9950 -3.9072 12 6 2.0322 -0.7104 1.2306 13 6 1.6925 -2.0327 1.4508 14 6 2.1550 -2.6880 2.5751 15 6 2.9537 -2.0144 3.4904 16 7 3.4197 -2.6736 4.6323 17 6 4.2126 -2.1303 5.6007 18 7 4.5085 -2.9307 6.5583 19 6 3.8994 -4.2479 6.3253 20 6 3.1438 -4.0750 4.9922 21 6 3.2887 -0.6848 3.2688 22 6 2.8276 -0.0371 2.1395 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 1.9041 -0.5278 -4.4374 27 1 1.0682 -2.5547 0.7408 28 1 1.8924 -3.7218 2.7447 29 1 4.5601 -1.1084 5.5656 30 1 3.2058 -4.4960 7.1287 31 1 4.6673 -5.0160 6.2332 32 1 2.0744 -4.2334 5.1320 33 1 3.5389 -4.7521 4.2349 34 1 3.9092 -0.1582 3.9787 35 1 3.0882 0.9966 1.9665 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261226389.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:31 Heat of formation + Delta-G solvation = 62.727115 kcal Electronic energy + Delta-G solvation = -16836.777244 eV Core-core repulsion = 14221.128905 eV Total energy + Delta-G solvation = -2615.648338 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.59325 -38.55992 -34.94558 -32.77874 -31.26447 -30.86824 -29.82595 -27.79928 -25.07802 -23.46751 -23.11161 -21.37565 -20.54104 -19.46110 -17.95952 -16.60878 -16.16693 -15.32196 -15.00765 -14.45058 -14.13987 -13.72291 -13.31116 -13.18060 -13.00008 -12.75252 -12.45035 -12.27847 -12.16889 -12.05821 -11.72936 -11.02900 -10.95819 -10.62579 -10.28989 -10.06634 -9.97037 -9.41995 -9.25684 -8.90111 -8.59344 -8.50877 -7.12705 -6.10797 -4.10725 1.68654 1.84674 2.64081 2.93670 3.24567 3.35099 3.37568 4.29809 4.31955 4.37478 4.49950 4.89721 5.00657 5.19480 5.21833 5.30617 5.38084 5.60442 5.66845 5.68920 5.74727 5.96620 6.10727 6.26294 6.32842 6.44207 6.47419 6.64300 6.84823 6.86427 7.00936 7.11867 7.31614 7.56332 7.67208 7.71288 7.77284 8.47826 8.93460 9.50401 11.02053 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.052381 B = 0.004832 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.412734 B = 5793.590891 C = 5935.195340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.039 3.961 3 H 0.035 0.965 4 C -0.509 4.509 5 H 0.076 0.924 6 C 0.070 3.930 7 N -0.899 5.899 8 Si 0.888 3.112 9 H -0.279 1.279 10 H -0.266 1.266 11 H -0.298 1.298 12 C -0.053 4.053 13 C -0.070 4.070 14 C -0.164 4.164 15 C 0.159 3.841 16 N -0.577 5.577 17 C 0.347 3.653 18 N -0.575 5.575 19 C 0.021 3.979 20 C 0.071 3.929 21 C -0.167 4.167 22 C -0.092 4.092 23 H 0.030 0.970 24 H 0.040 0.960 25 H 0.053 0.947 26 H 0.264 0.736 27 H 0.129 0.871 28 H 0.114 0.886 29 H 0.189 0.811 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.116 0.884 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.023 -2.582 15.256 15.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.021 3.979 3 H 0.053 0.947 4 C -0.547 4.547 5 H 0.094 0.906 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.719 3.281 9 H -0.206 1.206 10 H -0.191 1.191 11 H -0.226 1.226 12 C -0.054 4.054 13 C -0.088 4.088 14 C -0.186 4.186 15 C 0.065 3.935 16 N -0.288 5.288 17 C 0.050 3.950 18 N -0.299 5.299 19 C -0.109 4.109 20 C -0.053 4.053 21 C -0.189 4.189 22 C -0.111 4.111 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.147 0.853 28 H 0.132 0.868 29 H 0.205 0.795 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.134 0.866 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.453 -2.755 15.931 16.174 hybrid contribution -1.044 0.499 -1.043 1.558 sum -0.591 -2.256 14.888 15.070 Atomic orbital electron populations 1.22168 0.98475 1.00863 0.98599 1.18312 0.91855 0.96127 0.91644 0.94693 1.20970 1.32088 1.13551 0.88055 0.90617 1.25008 0.95710 0.96618 0.95805 1.69892 1.45536 1.40360 0.97946 0.86836 0.80561 0.83795 0.76907 1.20624 1.19125 1.22561 1.20171 0.95653 0.94043 0.95561 1.20919 0.98354 0.94383 0.95186 1.20633 1.02275 0.99673 0.95990 1.17437 0.97660 0.91896 0.86492 1.45756 1.50115 1.11518 1.21401 1.24751 0.87107 0.99192 0.83934 1.74261 1.28217 1.02582 1.24824 1.23137 0.98044 0.94831 0.94900 1.22762 1.01342 0.83018 0.98200 1.20535 1.05287 0.92835 1.00207 1.20913 0.97336 0.99746 0.93087 0.95088 0.94116 0.92797 0.92602 0.85322 0.86777 0.79486 0.89570 0.89508 0.90344 0.90284 0.86620 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.48 37.16 0.32 -2.67 16 2 C 0.04 0.89 2.07 -92.92 -0.19 0.69 16 3 H 0.04 0.80 6.93 -51.93 -0.36 0.44 16 4 C -0.51 -13.72 8.83 -34.44 -0.30 -14.02 16 5 H 0.08 2.24 7.85 -52.49 -0.41 1.82 16 6 C 0.07 1.96 5.45 -17.82 -0.10 1.87 16 7 N -0.90 -26.92 13.96 55.43 0.77 -26.15 16 8 Si 0.89 21.35 24.37 -169.99 -4.14 17.21 16 9 H -0.28 -6.54 6.87 56.52 0.39 -6.15 16 10 H -0.27 -6.09 6.53 56.52 0.37 -5.72 16 11 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 12 C -0.05 -1.04 4.74 -104.58 -0.50 -1.53 16 13 C -0.07 -1.28 8.70 -39.61 -0.34 -1.62 16 14 C -0.16 -2.59 9.50 -39.39 -0.37 -2.97 16 15 C 0.16 2.38 6.64 -83.71 -0.56 1.83 16 16 N -0.58 -7.49 3.23 -114.78 -0.37 -7.86 16 17 C 0.35 4.19 11.59 -90.90 -1.05 3.14 16 18 N -0.57 -7.42 11.60 -61.71 -0.72 -8.14 16 19 C 0.02 0.22 8.05 -3.15 -0.03 0.19 16 20 C 0.07 0.76 6.58 -2.98 -0.02 0.74 16 21 C -0.17 -2.47 9.45 -39.39 -0.37 -2.84 16 22 C -0.09 -1.57 9.66 -39.61 -0.38 -1.95 16 23 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.04 0.89 3.27 -51.93 -0.17 0.72 16 25 H 0.05 1.07 7.37 -51.93 -0.38 0.69 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 27 H 0.13 2.40 7.56 -52.48 -0.40 2.00 16 28 H 0.11 1.56 7.32 -52.48 -0.38 1.18 16 29 H 0.19 1.76 6.79 -52.49 -0.36 1.40 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.12 1.36 6.60 -52.48 -0.35 1.01 16 35 H 0.12 1.89 7.94 -52.49 -0.42 1.47 16 LS Contribution 284.08 15.07 4.28 4.28 Total: -1.00 -30.42 284.08 -8.60 -39.02 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -4.52 Total: 0.78 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -3.90 Total: -19.15 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: -0.31 Total: -42.15 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.14 Total: 17.21 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.42 -8.60 -39.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261226389.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.750 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds