Wall clock time and date at job start Mon Mar 30 2020 06:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47711 * 2 1 4 4 C 1.50697 * 109.47323 * 239.99128 * 2 1 3 5 5 H 1.08002 * 120.00599 * 240.00782 * 4 2 1 6 6 C 1.37880 * 119.99675 * 60.00315 * 4 2 1 7 7 N 1.31517 * 120.00210 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00019 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46845 * 269.99914 * 8 6 4 10 10 H 1.48503 * 109.47399 * 29.99403 * 8 6 4 11 11 H 1.48498 * 109.47295 * 150.00010 * 8 6 4 12 12 C 1.50707 * 109.46640 * 119.99870 * 2 1 3 13 13 C 1.38285 * 119.92885 * 59.72474 * 12 2 1 14 14 C 1.38107 * 120.07094 * 179.77045 * 13 12 2 15 15 C 1.38898 * 119.92534 * 0.50098 * 14 13 12 16 16 N 1.39851 * 120.06975 * 179.77216 * 15 14 13 17 17 C 1.36439 * 125.83897 * 179.67120 * 16 15 14 18 18 N 1.28266 * 114.54905 * 179.77352 * 17 16 15 19 19 C 1.46974 * 110.19872 * 0.49567 * 18 17 16 20 20 C 1.47291 * 125.84306 * 359.97438 * 16 15 14 21 21 C 1.38888 * 119.85621 * 359.74975 * 15 14 13 22 22 C 1.38109 * 119.92622 * 359.97438 * 21 15 14 23 23 H 1.08998 * 109.47206 * 300.00454 * 1 2 3 24 24 H 1.09006 * 109.46667 * 60.00472 * 1 2 3 25 25 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 26 26 H 0.96998 * 119.99640 * 180.02562 * 7 6 4 27 27 H 1.08003 * 119.96263 * 0.02562 * 13 12 2 28 28 H 1.08004 * 120.03620 * 180.23336 * 14 13 12 29 29 H 1.07995 * 122.73030 * 359.97438 * 17 16 15 30 30 H 1.09001 * 110.54066 * 241.12099 * 19 18 17 31 31 H 1.09000 * 110.66728 * 118.37457 * 19 18 17 32 32 H 1.09007 * 110.69511 * 298.39678 * 20 16 15 33 33 H 1.09000 * 110.69688 * 61.60700 * 20 16 15 34 34 H 1.08003 * 120.03433 * 179.97438 * 21 15 14 35 35 H 1.08000 * 119.95920 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 2.1381 -0.8594 -3.5564 8 14 0.6260 1.2796 -2.6542 9 1 -0.8019 0.8743 -2.6994 10 1 0.8492 2.1772 -1.4924 11 1 0.9773 1.9950 -3.9072 12 6 2.0322 -0.7104 1.2306 13 6 1.6925 -2.0327 1.4508 14 6 2.1550 -2.6880 2.5751 15 6 2.9537 -2.0144 3.4904 16 7 3.4197 -2.6736 4.6323 17 6 4.2126 -2.1303 5.6007 18 7 4.5085 -2.9307 6.5583 19 6 3.8994 -4.2479 6.3253 20 6 3.1438 -4.0750 4.9922 21 6 3.2887 -0.6848 3.2688 22 6 2.8276 -0.0371 2.1395 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 1.9041 -0.5278 -4.4374 27 1 1.0682 -2.5547 0.7408 28 1 1.8924 -3.7218 2.7447 29 1 4.5601 -1.1084 5.5656 30 1 3.2058 -4.4960 7.1287 31 1 4.6673 -5.0160 6.2332 32 1 2.0744 -4.2334 5.1320 33 1 3.5389 -4.7521 4.2349 34 1 3.9092 -0.1582 3.9787 35 1 3.0882 0.9966 1.9665 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261226389.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:28 Heat of formation + Delta-G solvation = 44.433632 kcal Electronic energy + Delta-G solvation = -16837.570509 eV Core-core repulsion = 14221.128905 eV Total energy + Delta-G solvation = -2616.441603 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.59742 -39.81345 -36.50579 -34.33228 -32.93010 -32.04820 -30.81302 -29.08834 -27.03981 -24.70180 -24.27942 -22.60115 -21.73918 -20.78289 -19.04188 -18.61191 -17.06391 -17.02695 -16.23558 -15.88624 -15.45254 -14.99918 -14.61548 -14.34099 -14.29091 -14.22168 -13.95308 -13.75719 -13.32010 -13.19655 -12.97167 -12.79410 -12.34190 -12.14873 -11.84755 -11.70229 -11.21019 -11.10806 -10.99545 -10.70150 -10.13234 -9.77395 -8.30771 -8.24025 -6.29210 0.47413 0.57812 1.34446 1.39728 1.50365 1.64340 1.94468 2.35974 3.01498 3.12108 3.46271 3.65159 3.93747 4.09810 4.11754 4.19341 4.33198 4.41992 4.61308 4.66497 4.70111 4.74564 4.83102 4.88452 4.92232 5.01253 5.14755 5.18378 5.27131 5.52023 5.62357 5.67815 5.71281 6.03417 6.08864 6.37257 6.59139 6.77735 6.83868 7.35494 8.90968 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.052381 B = 0.004832 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.412734 B = 5793.590891 C = 5935.195340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.040 3.960 3 H 0.035 0.965 4 C -0.505 4.505 5 H 0.032 0.968 6 C 0.010 3.990 7 N -0.952 5.952 8 Si 0.951 3.049 9 H -0.268 1.268 10 H -0.243 1.243 11 H -0.303 1.303 12 C -0.088 4.088 13 C -0.085 4.085 14 C -0.167 4.167 15 C 0.170 3.830 16 N -0.582 5.582 17 C 0.343 3.657 18 N -0.594 5.594 19 C 0.020 3.980 20 C 0.067 3.933 21 C -0.161 4.161 22 C -0.095 4.095 23 H 0.061 0.939 24 H 0.031 0.969 25 H 0.051 0.949 26 H 0.264 0.736 27 H 0.111 0.889 28 H 0.132 0.868 29 H 0.213 0.787 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.152 0.848 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.275 -1.627 17.876 17.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.021 3.979 3 H 0.053 0.947 4 C -0.543 4.543 5 H 0.050 0.950 6 C -0.186 4.186 7 N -0.593 5.593 8 Si 0.778 3.222 9 H -0.195 1.195 10 H -0.167 1.167 11 H -0.231 1.231 12 C -0.089 4.089 13 C -0.103 4.103 14 C -0.188 4.188 15 C 0.074 3.926 16 N -0.293 5.293 17 C 0.047 3.953 18 N -0.318 5.318 19 C -0.110 4.110 20 C -0.057 4.057 21 C -0.183 4.183 22 C -0.114 4.114 23 H 0.080 0.920 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.129 0.871 28 H 0.150 0.850 29 H 0.229 0.771 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.170 0.830 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.205 -1.817 18.609 18.698 hybrid contribution -0.851 0.047 -1.703 1.905 sum -0.646 -1.769 16.906 17.010 Atomic orbital electron populations 1.22085 0.97058 1.01146 0.99500 1.18209 0.93062 0.95633 0.90969 0.94695 1.21245 1.30603 1.12161 0.90282 0.94993 1.25876 0.97361 0.99985 0.95394 1.70054 1.47952 1.42696 0.98593 0.85820 0.79000 0.80129 0.77257 1.19452 1.16698 1.23071 1.20022 0.98318 0.94796 0.95758 1.20825 0.99134 0.94313 0.96064 1.20734 1.02258 1.00495 0.95356 1.17509 0.96398 0.92071 0.86577 1.45871 1.50181 1.12320 1.20912 1.25215 0.86624 1.00175 0.83298 1.74249 1.28527 1.03730 1.25256 1.23235 0.98484 0.94150 0.95099 1.22921 1.02168 0.82117 0.98452 1.20851 1.04718 0.92804 0.99879 1.21069 0.96606 1.00448 0.93239 0.92035 0.95061 0.92999 0.92674 0.87090 0.85028 0.77076 0.88323 0.88621 0.89274 0.89874 0.83034 0.84708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.67 8.48 71.98 0.61 -5.06 16 2 C 0.04 1.79 2.07 -12.28 -0.03 1.76 16 3 H 0.03 1.55 6.93 -2.39 -0.02 1.53 16 4 C -0.50 -28.11 8.83 25.60 0.23 -27.89 16 5 H 0.03 2.00 7.85 -2.91 -0.02 1.97 16 6 C 0.01 0.59 5.45 84.65 0.46 1.05 16 7 N -0.95 -59.23 13.96 21.45 0.30 -58.93 16 8 Si 0.95 44.12 24.37 68.60 1.67 45.80 16 9 H -0.27 -11.88 6.87 99.48 0.68 -11.20 16 10 H -0.24 -10.29 6.53 99.48 0.65 -9.64 16 11 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 12 C -0.09 -3.39 4.74 -19.84 -0.09 -3.49 16 13 C -0.08 -3.11 8.70 22.25 0.19 -2.92 16 14 C -0.17 -5.06 9.50 22.40 0.21 -4.85 16 15 C 0.17 4.65 6.64 38.18 0.25 4.90 16 16 N -0.58 -13.34 3.23 -517.06 -1.67 -15.01 16 17 C 0.34 7.14 11.59 180.45 2.09 9.23 16 18 N -0.59 -13.62 11.60 -349.13 -4.05 -17.67 16 19 C 0.02 0.36 8.05 86.70 0.70 1.06 16 20 C 0.07 1.26 6.58 86.64 0.57 1.83 16 21 C -0.16 -4.26 9.45 22.39 0.21 -4.05 16 22 C -0.10 -3.04 9.66 22.25 0.21 -2.83 16 23 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.03 1.30 3.27 -2.38 -0.01 1.29 16 25 H 0.05 2.06 7.37 -2.39 -0.02 2.04 16 26 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 27 H 0.11 4.33 7.56 -2.91 -0.02 4.31 16 28 H 0.13 3.40 7.32 -2.91 -0.02 3.38 16 29 H 0.21 3.08 6.79 -2.91 -0.02 3.06 16 30 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.15 2.86 6.60 -2.91 -0.02 2.84 16 35 H 0.14 3.86 7.94 -2.91 -0.02 3.84 16 Total: -1.00 -67.15 284.08 2.88 -64.27 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 1.00 Total: 12.78 kcal Atomic # 6 Polarization: -36.87 SS G_CDS: 5.63 Total: -31.24 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -5.42 Total: -91.60 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.67 Total: 45.80 kcal Total: -67.15 2.88 -64.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261226389.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.704 kcal (2) G-P(sol) polarization free energy of solvation -67.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds