Wall clock time and date at job start Mon Mar 30 2020 06:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46723 * 2 1 4 4 H 1.08997 * 109.47598 * 305.56994 * 3 2 1 5 5 C 1.50707 * 109.46918 * 185.57107 * 3 2 1 6 6 H 1.08002 * 119.99793 * 245.60280 * 5 3 2 7 7 C 1.37875 * 119.99997 * 65.60497 * 5 3 2 8 8 N 1.31509 * 120.00160 * 196.26941 * 7 5 3 9 9 Si 1.86807 * 119.99795 * 16.27374 * 7 5 3 10 10 H 1.48496 * 109.46882 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47145 * 299.99781 * 9 7 5 12 12 H 1.48504 * 109.46814 * 60.00102 * 9 7 5 13 13 N 1.46500 * 109.47059 * 65.57560 * 3 2 1 14 14 C 1.39702 * 120.00074 * 274.99319 * 13 3 2 15 15 C 1.39030 * 120.00574 * 179.97438 * 14 13 3 16 16 C 1.38200 * 120.23640 * 179.97438 * 15 14 13 17 17 C 1.50707 * 119.88672 * 180.02562 * 16 15 14 18 18 C 1.38017 * 120.23464 * 0.03065 * 16 15 14 19 19 C 1.39638 * 119.99397 * 359.97438 * 18 16 15 20 20 C 1.43198 * 120.11419 * 180.02562 * 19 18 16 21 21 N 6.06647 * 35.33758 * 335.06083 * 2 1 3 22 22 C 1.38620 * 119.99815 * 359.73300 * 14 13 3 23 23 H 1.08994 * 109.47379 * 59.99866 * 1 2 3 24 24 H 1.09007 * 109.46639 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47281 * 299.99553 * 1 2 3 26 26 H 1.08999 * 109.46789 * 240.00484 * 2 1 3 27 27 H 1.09002 * 109.47205 * 120.00467 * 2 1 3 28 28 H 0.96993 * 119.99951 * 354.84169 * 8 7 5 29 29 H 0.97000 * 120.00184 * 94.99515 * 13 3 2 30 30 H 1.08006 * 119.88413 * 0.02562 * 15 14 13 31 31 H 1.09003 * 109.46639 * 90.00258 * 17 16 15 32 32 H 1.08991 * 109.47002 * 210.00455 * 17 16 15 33 33 H 1.09001 * 109.46874 * 330.00890 * 17 16 15 34 34 H 1.07993 * 120.00565 * 179.97438 * 18 16 15 35 35 H 1.08004 * 120.11916 * 359.96880 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5974 1.9843 -0.8359 5 6 3.5407 1.4448 -0.1379 6 1 4.1569 1.8042 0.6729 7 6 4.1269 0.9881 -1.2993 8 7 5.4069 0.6866 -1.3153 9 14 3.1030 0.7977 -2.8501 10 1 3.9622 0.2948 -3.9519 11 1 2.0017 -0.1667 -2.6009 12 1 2.5313 2.1145 -3.2305 13 7 1.6642 2.0932 1.2576 14 6 0.4036 2.6805 1.3908 15 6 0.0467 3.2976 2.5845 16 6 -1.1989 3.8805 2.7213 17 6 -1.5773 4.5478 4.0185 18 6 -2.0976 3.8535 1.6742 19 6 -1.7493 3.2362 0.4711 20 6 -2.6796 3.2073 -0.6172 21 7 -3.4187 3.1816 -1.4795 22 6 -0.4896 2.6522 0.3312 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 5.9547 0.8557 -0.5330 29 1 2.2907 2.1164 1.9978 30 1 0.7457 3.3223 3.4075 31 1 -1.2902 5.5988 3.9836 32 1 -2.6543 4.4700 4.1664 33 1 -1.0608 4.0573 4.8436 34 1 -3.0701 4.3098 1.7853 35 1 -0.2128 2.1772 -0.5985 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308154625.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:07 Heat of formation + Delta-G solvation = 30.019932 kcal Electronic energy + Delta-G solvation = -17145.903209 eV Core-core repulsion = 14528.836581 eV Total energy + Delta-G solvation = -2617.066628 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.85590 -38.21801 -37.37244 -34.84867 -33.49500 -33.31870 -30.72645 -28.26032 -27.66258 -24.84543 -24.23369 -22.81044 -20.88295 -20.16531 -18.98130 -17.45886 -16.92985 -16.67151 -15.95707 -15.46236 -15.27612 -14.83352 -14.58047 -14.45388 -14.18388 -14.07381 -13.91943 -13.80286 -13.66584 -12.84547 -12.83815 -12.64975 -12.42803 -12.30611 -12.27958 -12.06657 -11.66470 -11.35440 -11.04882 -10.70978 -10.46268 -9.57172 -8.83019 -8.13961 -6.43275 -0.06493 0.70524 1.43653 1.49001 1.60998 1.65741 2.03253 2.42017 2.72404 2.98401 3.01538 3.05388 3.95938 4.22461 4.35189 4.37684 4.41958 4.46448 4.57684 4.58419 4.78280 4.83402 5.01738 5.05630 5.13377 5.18299 5.27589 5.35936 5.40393 5.47193 5.59101 5.70421 5.73510 5.96994 5.99940 6.35344 6.44571 6.73362 7.09584 7.34386 8.60466 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.024022 B = 0.007303 C = 0.006139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.334461 B = 3832.874875 C = 4560.037284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.141 4.141 3 C 0.257 3.743 4 H 0.027 0.973 5 C -0.610 4.610 6 H 0.032 0.968 7 C -0.009 4.009 8 N -0.934 5.934 9 Si 1.066 2.934 10 H -0.288 1.288 11 H -0.238 1.238 12 H -0.267 1.267 13 N -0.723 5.723 14 C 0.217 3.783 15 C -0.178 4.178 16 C -0.036 4.036 17 C -0.111 4.111 18 C -0.135 4.135 19 C 0.007 3.993 20 C 0.282 3.718 21 N -0.464 5.464 22 C -0.177 4.177 23 H 0.049 0.951 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.256 0.744 29 H 0.398 0.602 30 H 0.138 0.862 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.147 0.853 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.113 5.224 9.885 18.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C 0.151 3.849 4 H 0.045 0.955 5 C -0.648 4.648 6 H 0.050 0.950 7 C -0.209 4.209 8 N -0.569 5.569 9 Si 0.888 3.112 10 H -0.214 1.214 11 H -0.162 1.162 12 H -0.192 1.192 13 N -0.347 5.347 14 C 0.111 3.889 15 C -0.202 4.202 16 C -0.037 4.037 17 C -0.167 4.167 18 C -0.158 4.158 19 C 0.003 3.997 20 C -0.033 4.033 21 N -0.140 5.140 22 C -0.202 4.202 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.232 0.768 30 H 0.155 0.845 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.165 0.835 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.119 4.557 6.795 17.191 hybrid contribution 1.457 0.339 1.934 2.445 sum -13.662 4.896 8.730 16.936 Atomic orbital electron populations 1.22162 0.95475 1.01475 1.01609 1.22333 0.95554 0.98873 1.01231 1.18719 0.93148 0.89358 0.83625 0.95511 1.22311 0.92181 1.47532 1.02773 0.94973 1.26870 0.97694 0.92184 1.04133 1.70975 1.08284 1.43677 1.33987 0.83819 0.75490 0.78959 0.72918 1.21434 1.16214 1.19229 1.44975 1.13065 1.60180 1.16510 1.17897 0.85645 0.91656 0.93738 1.20886 0.98613 1.04002 0.96654 1.19762 0.91926 0.95586 0.96463 1.20857 1.03060 1.00596 0.92211 1.20897 1.01348 1.02555 0.91013 1.15685 0.90515 1.03294 0.90231 1.25983 0.92434 0.92255 0.92595 1.81206 1.11490 1.10250 1.11085 1.20879 0.93464 1.06106 0.99782 0.93242 0.92584 0.91555 0.92692 0.93225 0.93493 0.76760 0.84460 0.89940 0.89886 0.90540 0.83522 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 8.23 71.98 0.59 -4.31 16 2 C -0.14 -5.59 5.27 30.59 0.16 -5.43 16 3 C 0.26 11.00 1.78 44.25 0.08 11.08 16 4 H 0.03 1.19 5.15 -2.39 -0.01 1.18 16 5 C -0.61 -32.14 9.01 25.60 0.23 -31.91 16 6 H 0.03 1.84 7.96 -2.91 -0.02 1.81 16 7 C -0.01 -0.49 5.32 84.65 0.45 -0.04 16 8 N -0.93 -56.20 13.70 21.45 0.29 -55.90 16 9 Si 1.07 48.01 26.27 68.60 1.80 49.82 16 10 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 11 H -0.24 -9.48 5.66 99.48 0.56 -8.92 16 12 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 13 N -0.72 -26.00 5.18 -322.63 -1.67 -27.67 16 14 C 0.22 6.61 5.50 38.17 0.21 6.82 16 15 C -0.18 -4.25 9.53 22.45 0.21 -4.03 16 16 C -0.04 -0.71 5.87 -19.92 -0.12 -0.83 16 17 C -0.11 -1.36 10.01 71.24 0.71 -0.65 16 18 C -0.14 -2.83 9.40 22.56 0.21 -2.62 16 19 C 0.01 0.18 5.73 -21.38 -0.12 0.06 16 20 C 0.28 8.15 15.33 88.33 1.35 9.51 16 21 N -0.46 -15.04 18.54 19.00 0.35 -14.69 16 22 C -0.18 -5.42 6.42 22.68 0.15 -5.27 16 23 H 0.05 1.59 6.41 -2.39 -0.02 1.57 16 24 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 25 H 0.07 2.07 5.38 -2.39 -0.01 2.06 16 26 H 0.05 2.32 4.74 -2.39 -0.01 2.30 16 27 H 0.05 1.99 8.14 -2.39 -0.02 1.98 16 28 H 0.26 15.52 8.73 -92.71 -0.81 14.71 16 29 H 0.40 13.80 8.54 -92.71 -0.79 13.01 16 30 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 0.79 8.08 -2.39 -0.02 0.77 16 33 H 0.08 0.83 8.08 -2.39 -0.02 0.82 16 34 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.12 4.11 4.02 -2.91 -0.01 4.09 16 Total: -1.00 -61.39 288.58 5.04 -56.34 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.15 Total: 19.73 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 4.12 Total: -27.63 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -1.03 Total: -98.27 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 1.80 Total: 49.82 kcal Total: -61.39 5.04 -56.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308154625.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.364 kcal (2) G-P(sol) polarization free energy of solvation -61.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds