Wall clock time and date at job start Mon Mar 30 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47078 * 76.82341 * 3 2 1 5 5 C 1.52993 * 109.47168 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47460 * 180.02562 * 5 4 3 7 7 N 1.46495 * 109.47689 * 180.02562 * 6 5 4 8 8 C 1.39248 * 120.00206 * 179.97438 * 7 6 5 9 9 C 1.39712 * 120.78534 * 359.97438 * 8 7 6 10 10 C 1.38447 * 119.47508 * 180.02562 * 9 8 7 11 11 N 1.31531 * 121.10314 * 0.02562 * 10 9 8 12 12 C 1.33694 * 121.70245 * 359.68780 * 11 10 9 13 13 C 1.41457 * 119.79882 * 180.30448 * 12 11 10 14 14 H 1.08004 * 120.00251 * 180.26543 * 13 12 11 15 15 C 1.40018 * 120.00032 * 0.27156 * 13 12 11 16 16 N 1.30746 * 119.99876 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00045 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47083 * 59.99750 * 17 15 13 19 19 H 1.48493 * 109.47013 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46885 * 299.99764 * 17 15 13 21 21 C 1.39027 * 120.78183 * 180.02562 * 8 7 6 22 22 H 4.44649 * 5.63331 * 180.02562 * 4 1 2 23 23 H 1.08998 * 109.47104 * 316.82916 * 3 2 1 24 24 H 1.08998 * 109.47251 * 196.82130 * 3 2 1 25 25 H 1.08998 * 109.46684 * 60.00317 * 4 3 2 26 26 H 1.08996 * 109.47293 * 300.00659 * 4 3 2 27 27 H 1.09004 * 109.47237 * 60.00146 * 5 4 3 28 28 H 1.09004 * 109.47407 * 300.00233 * 5 4 3 29 29 H 1.09004 * 109.47099 * 59.99666 * 6 5 4 30 30 H 1.09004 * 109.46678 * 300.00284 * 6 5 4 31 31 H 0.97008 * 119.99671 * 359.97438 * 7 6 5 32 32 H 1.08000 * 120.26325 * 0.02562 * 9 8 7 33 33 H 1.07998 * 119.44697 * 180.02562 * 10 9 8 34 34 H 0.96994 * 120.00265 * 180.02562 * 16 15 13 35 35 H 1.08002 * 120.55759 * 359.94863 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.3279 -1.4046 5 6 4.6861 -0.3266 -1.4047 6 6 5.1963 -0.6546 -2.8094 7 7 6.6613 -0.6540 -2.8095 8 6 7.3576 -0.9285 -3.9836 9 6 6.6758 -1.2073 -5.1708 10 6 7.3954 -1.4772 -6.3224 11 7 8.7107 -1.4760 -6.3177 12 6 9.4090 -1.2098 -5.2091 13 6 10.8230 -1.2132 -5.2513 14 1 11.3904 -1.0028 -4.3567 15 6 11.4869 -1.4891 -6.4527 16 7 10.8000 -1.7441 -7.5356 17 14 13.3541 -1.4928 -6.5086 18 1 13.8754 -2.5163 -5.5673 19 1 13.8074 -1.8114 -7.8862 20 1 13.8636 -0.1543 -6.1163 21 6 8.7477 -0.9328 -4.0020 22 1 -1.0499 0.0002 -0.0001 23 1 3.0097 -0.7487 0.7031 24 1 3.0089 0.9845 0.2974 25 1 2.7925 0.4214 -2.1077 26 1 2.7932 -1.3117 -1.7021 27 1 5.0502 -1.0757 -0.7015 28 1 5.0487 0.6574 -1.1075 29 1 4.8322 0.0947 -3.5123 30 1 4.8337 -1.6385 -3.1070 31 1 7.1462 -0.4622 -1.9915 32 1 5.5960 -1.2123 -5.1900 33 1 6.8679 -1.6922 -7.2399 34 1 11.2599 -1.9356 -8.3678 35 1 9.3094 -0.7219 -3.1040 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309324088.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:51 Heat of formation + Delta-G solvation = 50.271550 kcal Electronic energy + Delta-G solvation = -15897.422943 eV Core-core repulsion = 13281.234491 eV Total energy + Delta-G solvation = -2616.188452 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 3.98 seconds Orbital eigenvalues (eV) -40.13192 -37.91683 -36.28644 -35.16618 -33.51556 -31.82226 -30.95463 -28.66120 -27.55109 -24.77787 -23.55209 -22.35806 -21.96881 -19.36167 -18.91299 -17.51582 -16.96210 -16.78306 -16.42727 -15.93149 -15.17128 -15.15778 -15.10101 -14.62834 -14.06968 -14.02174 -13.81147 -13.13791 -13.02393 -12.76979 -12.60994 -12.46078 -12.29152 -12.04011 -11.83446 -11.59088 -11.29586 -11.07099 -10.96665 -10.90251 -9.52207 -9.40072 -8.33057 -8.22058 -6.48242 0.99162 1.41910 1.41995 1.54873 1.61999 1.88305 1.93439 2.26050 2.71692 2.92559 3.54000 3.94689 4.01539 4.07390 4.28345 4.33397 4.45526 4.60280 4.65933 4.74309 4.78378 4.88344 4.94271 5.03341 5.09766 5.22138 5.24359 5.32721 5.34157 5.45940 5.72626 5.74108 5.90015 6.31590 6.63308 6.72749 6.85962 7.01728 7.14614 8.33744 8.53013 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.069815 B = 0.003308 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.961846 B = 8461.091783 C = 8830.983459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.217 4.217 3 C -0.013 4.013 4 C -0.104 4.104 5 C -0.117 4.117 6 C 0.130 3.870 7 N -0.745 5.745 8 C 0.260 3.740 9 C -0.368 4.368 10 C 0.130 3.870 11 N -0.546 5.546 12 C 0.248 3.752 13 C -0.474 4.474 14 H 0.085 0.915 15 C 0.023 3.977 16 N -0.758 5.758 17 Si 0.988 3.012 18 H -0.259 1.259 19 H -0.268 1.268 20 H -0.259 1.259 21 C -0.369 4.369 22 H 0.241 0.759 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.400 0.600 32 H 0.118 0.882 33 H 0.135 0.865 34 H 0.277 0.723 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.361 2.752 11.758 17.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.217 4.217 3 C -0.049 4.049 4 C -0.142 4.142 5 C -0.155 4.155 6 C 0.006 3.994 7 N -0.377 5.377 8 C 0.152 3.848 9 C -0.396 4.396 10 C -0.036 4.036 11 N -0.262 5.262 12 C 0.124 3.876 13 C -0.505 4.505 14 H 0.103 0.897 15 C -0.198 4.198 16 N -0.380 5.380 17 Si 0.808 3.192 18 H -0.183 1.183 19 H -0.192 1.192 20 H -0.183 1.183 21 C -0.396 4.396 22 H 0.257 0.743 23 H 0.115 0.885 24 H 0.115 0.885 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.234 0.766 32 H 0.136 0.864 33 H 0.153 0.847 34 H 0.088 0.912 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.058 2.511 10.742 16.343 hybrid contribution 0.146 0.182 0.755 0.791 sum -11.912 2.693 11.497 16.773 Atomic orbital electron populations 1.25705 0.97017 1.00706 1.00016 1.23784 0.95687 1.00986 1.01254 1.18806 0.83928 1.04103 0.98084 1.21353 0.93996 1.02502 0.96336 1.21667 0.95534 1.03242 0.95036 1.21293 0.79443 1.00266 0.98421 1.44442 1.05562 1.79156 1.08535 1.17732 0.90526 0.89541 0.87036 1.21098 0.99173 1.25342 0.93964 1.22736 0.91376 0.92729 0.96715 1.68703 1.06452 1.21923 1.29111 1.18799 0.94415 0.87288 0.87091 1.19911 0.90785 1.42935 0.96905 0.89722 1.27029 1.05785 0.92562 0.94447 1.70257 1.39029 1.28298 1.00398 0.85195 0.75506 0.79956 0.78558 1.18303 1.19220 1.18290 1.21256 0.92720 1.26069 0.99518 0.74274 0.88466 0.88465 0.91629 0.91620 0.90321 0.90326 0.93346 0.93354 0.76564 0.86357 0.84727 0.91200 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.48 19.25 74.32 1.43 -2.05 16 2 C -0.22 -3.92 13.34 31.12 0.42 -3.50 16 3 C -0.01 -0.18 5.70 28.79 0.16 -0.02 16 4 C -0.10 -1.66 5.17 30.59 0.16 -1.50 16 5 C -0.12 -2.06 5.33 30.59 0.16 -1.90 16 6 C 0.13 3.39 4.94 86.38 0.43 3.81 16 7 N -0.74 -24.99 5.72 -339.00 -1.94 -26.93 16 8 C 0.26 11.72 6.69 38.51 0.26 11.98 16 9 C -0.37 -16.78 9.40 22.68 0.21 -16.57 16 10 C 0.13 6.61 11.17 84.79 0.95 7.56 16 11 N -0.55 -32.18 7.86 -189.38 -1.49 -33.67 16 12 C 0.25 14.56 6.55 40.18 0.26 14.82 16 13 C -0.47 -27.04 9.14 23.49 0.21 -26.83 16 14 H 0.08 4.51 7.85 -2.91 -0.02 4.48 16 15 C 0.02 1.23 5.50 85.29 0.47 1.70 16 16 N -0.76 -42.74 11.46 21.84 0.25 -42.49 16 17 Si 0.99 39.48 29.56 68.60 2.03 41.51 16 18 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 19 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 20 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 21 C -0.37 -18.99 9.72 22.99 0.22 -18.77 16 22 H 0.24 2.08 7.80 -4.42 -0.03 2.05 16 23 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 1.32 7.99 -2.39 -0.02 1.30 16 30 H 0.05 1.32 7.99 -2.39 -0.02 1.30 16 31 H 0.40 11.81 8.50 -92.70 -0.79 11.02 16 32 H 0.12 4.65 6.87 -2.91 -0.02 4.63 16 33 H 0.14 6.07 8.06 -2.91 -0.02 6.05 16 34 H 0.28 14.12 8.29 -92.71 -0.77 13.35 16 35 H 0.10 4.87 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -69.23 308.09 4.48 -64.74 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: 0.28 Total: 28.10 kcal Atomic # 6 Polarization: -36.61 SS G_CDS: 5.35 Total: -31.26 kcal Atomic # 7 Polarization: -99.92 SS G_CDS: -3.18 Total: -103.10 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -69.23 4.48 -64.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309324088.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.017 kcal (2) G-P(sol) polarization free energy of solvation -69.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.98 seconds