Wall clock time and date at job start Mon Mar 30 2020 06:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47251 * 236.08393 * 3 2 1 5 5 H 1.09001 * 109.46956 * 54.99389 * 4 3 2 6 6 C 1.52997 * 109.47441 * 175.00391 * 4 3 2 7 7 C 1.53004 * 109.46933 * 185.00023 * 6 4 3 8 8 N 1.46512 * 109.46631 * 295.00230 * 4 3 2 9 9 C 1.39243 * 119.99570 * 155.00105 * 8 4 3 10 10 C 1.39709 * 120.78585 * 359.97438 * 9 8 4 11 11 C 1.38453 * 119.47361 * 180.02562 * 10 9 8 12 12 N 1.31537 * 121.10386 * 0.02562 * 11 10 9 13 13 C 1.33696 * 121.70319 * 0.02562 * 12 11 10 14 14 C 1.41448 * 119.79811 * 179.97438 * 13 12 11 15 15 H 1.08007 * 120.00333 * 187.07392 * 14 13 12 16 16 C 1.40007 * 120.00341 * 7.07543 * 14 13 12 17 17 N 1.30742 * 120.00611 * 182.54825 * 16 14 13 18 18 Si 1.86805 * 119.99728 * 2.54021 * 16 14 13 19 19 H 1.48500 * 109.46971 * 180.02562 * 18 16 14 20 20 H 1.48504 * 109.47204 * 300.00376 * 18 16 14 21 21 H 1.48504 * 109.46850 * 60.00368 * 18 16 14 22 22 C 1.39025 * 120.77999 * 180.29651 * 9 8 4 23 23 H 4.44657 * 5.63293 * 179.97438 * 4 1 2 24 24 H 1.09002 * 109.47219 * 116.08333 * 3 2 1 25 25 H 1.09002 * 109.47690 * 356.08098 * 3 2 1 26 26 H 1.09007 * 109.46822 * 304.99673 * 6 4 3 27 27 H 1.08996 * 109.47334 * 64.99528 * 6 4 3 28 28 H 1.08995 * 109.47143 * 60.00007 * 7 6 4 29 29 H 1.09002 * 109.46467 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.46858 * 299.99375 * 7 6 4 31 31 H 0.96994 * 119.99652 * 334.99641 * 8 4 3 32 32 H 1.07998 * 120.26358 * 0.04838 * 10 9 8 33 33 H 1.07994 * 119.45102 * 179.97438 * 11 10 9 34 34 H 0.97010 * 119.99796 * 354.84253 * 17 16 14 35 35 H 1.08003 * 120.56317 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1556 0.8058 1.1971 5 1 2.7211 0.4078 2.1141 6 6 4.6805 0.7033 1.2687 7 6 5.1797 1.4033 2.5343 8 7 2.7673 2.2100 1.0421 9 6 2.6359 3.0239 2.1642 10 6 2.8699 2.5185 3.4455 11 6 2.7308 3.3518 4.5424 12 7 2.3815 4.6117 4.3986 13 6 2.1456 5.1424 3.1943 14 6 1.7717 6.5023 3.0865 15 1 1.4698 6.9052 2.1309 16 6 1.7929 7.3261 4.2183 17 7 1.3999 8.5699 4.1291 18 14 2.3827 6.6482 5.8560 19 1 2.3077 7.7130 6.8884 20 1 1.5213 5.5074 6.2586 21 1 3.7874 6.1850 5.7230 22 6 2.2624 4.3569 2.0364 23 1 -1.0502 0.0000 -0.0004 24 1 3.0091 0.4527 -0.9230 25 1 3.0098 -1.0244 0.0702 26 1 4.9732 -0.3464 1.2946 27 1 5.1183 1.1810 0.3924 28 1 4.7419 0.9255 3.4106 29 1 6.2661 1.3298 2.5855 30 1 4.8870 2.4530 2.5084 31 1 2.6018 2.5726 0.1578 32 1 3.1573 1.4861 3.5792 33 1 2.9114 2.9606 5.5327 34 1 1.1647 8.9435 3.2653 35 1 2.0685 4.7820 1.0627 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310015494.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:29 Heat of formation + Delta-G solvation = 46.581766 kcal Electronic energy + Delta-G solvation = -17115.939725 eV Core-core repulsion = 14499.591272 eV Total energy + Delta-G solvation = -2616.348453 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.77561 -38.68454 -35.71553 -34.73211 -33.67842 -32.16654 -31.23215 -29.26751 -27.37463 -25.02296 -23.75543 -23.04991 -21.20098 -20.29294 -19.01908 -18.01420 -17.38246 -16.48823 -16.30967 -15.77709 -15.56545 -15.00136 -14.70845 -14.53200 -14.38942 -14.23003 -13.93121 -13.70647 -13.17081 -12.67093 -12.49796 -12.40828 -12.07005 -11.98524 -11.69524 -11.49381 -11.25543 -11.21051 -11.04445 -10.98301 -9.76698 -9.53964 -9.14684 -8.44238 -6.77380 0.81593 1.10267 1.65386 1.80552 1.87482 1.92282 2.12231 2.54735 2.60793 2.75991 3.48153 3.71389 3.92527 4.08234 4.16143 4.22345 4.48888 4.54476 4.65375 4.73414 4.76082 4.86971 4.90703 5.01432 5.12080 5.16479 5.21178 5.34788 5.42925 5.54266 5.57060 5.58813 5.67552 6.08713 6.31406 6.67447 6.72439 6.77128 6.94347 7.76947 8.02655 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.030374 B = 0.006333 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.621435 B = 4420.326092 C = 4863.134787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.204 4.204 3 C -0.014 4.014 4 C 0.157 3.843 5 H 0.074 0.926 6 C -0.128 4.128 7 C -0.157 4.157 8 N -0.731 5.731 9 C 0.288 3.712 10 C -0.337 4.337 11 C 0.151 3.849 12 N -0.621 5.621 13 C 0.264 3.736 14 C -0.521 4.521 15 H 0.054 0.946 16 C 0.015 3.985 17 N -0.840 5.840 18 Si 1.196 2.804 19 H -0.336 1.336 20 H -0.278 1.278 21 H -0.296 1.296 22 C -0.359 4.359 23 H 0.231 0.769 24 H 0.103 0.897 25 H 0.129 0.871 26 H 0.099 0.901 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.037 0.963 31 H 0.396 0.604 32 H 0.147 0.853 33 H 0.159 0.841 34 H 0.276 0.724 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.105 -19.384 -6.465 21.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.204 4.204 3 C -0.051 4.051 4 C 0.052 3.948 5 H 0.092 0.908 6 C -0.167 4.167 7 C -0.214 4.214 8 N -0.360 5.360 9 C 0.177 3.823 10 C -0.364 4.364 11 C -0.008 4.008 12 N -0.343 5.343 13 C 0.140 3.860 14 C -0.554 4.554 15 H 0.072 0.928 16 C -0.200 4.200 17 N -0.464 5.464 18 Si 1.030 2.970 19 H -0.271 1.271 20 H -0.206 1.206 21 H -0.224 1.224 22 C -0.386 4.386 23 H 0.248 0.752 24 H 0.121 0.879 25 H 0.147 0.853 26 H 0.117 0.883 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.231 0.769 32 H 0.164 0.836 33 H 0.176 0.824 34 H 0.086 0.914 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.205 -18.577 -4.279 19.762 hybrid contribution -0.815 0.123 -3.171 3.276 sum 4.390 -18.454 -7.450 20.379 Atomic orbital electron populations 1.25589 0.97111 1.01063 1.00527 1.23602 0.95537 1.00496 1.00803 1.19162 0.83815 1.03027 0.99081 1.21063 0.94936 0.80282 0.98539 0.90783 1.21994 0.93824 1.02329 0.98511 1.22099 1.00511 1.00626 0.98202 1.44633 1.76144 1.09696 1.05545 1.17688 0.87703 0.88616 0.88276 1.21372 1.22024 1.02158 0.90808 1.22542 0.90418 0.88572 0.99247 1.66361 1.27707 1.15508 1.24750 1.18446 0.86752 0.93037 0.87732 1.20672 1.42338 0.94952 0.97389 0.92777 1.28591 0.89748 0.93182 1.08476 1.70691 1.31389 1.15222 1.29141 0.81225 0.77086 0.70568 0.68134 1.27059 1.20603 1.22449 1.21034 1.24602 0.95124 0.97820 0.75238 0.87918 0.85303 0.88309 0.91524 0.91947 0.92708 0.94363 0.76935 0.83599 0.82387 0.91358 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -5.13 19.25 74.32 1.43 -3.70 16 2 C -0.20 -4.58 13.05 31.12 0.41 -4.17 16 3 C -0.01 -0.23 5.25 28.79 0.15 -0.08 16 4 C 0.16 3.26 2.19 44.99 0.10 3.36 16 5 H 0.07 1.71 6.53 -2.39 -0.02 1.69 16 6 C -0.13 -2.24 5.61 30.59 0.17 -2.07 16 7 C -0.16 -3.63 8.22 71.98 0.59 -3.04 16 8 N -0.73 -21.13 4.87 -318.52 -1.55 -22.68 16 9 C 0.29 11.15 5.50 38.51 0.21 11.36 16 10 C -0.34 -12.38 6.82 22.68 0.15 -12.22 16 11 C 0.15 6.33 11.17 84.79 0.95 7.28 16 12 N -0.62 -31.91 4.55 -189.38 -0.86 -32.78 16 13 C 0.26 14.50 6.39 40.18 0.26 14.75 16 14 C -0.52 -31.08 9.58 23.49 0.23 -30.86 16 15 H 0.05 3.32 8.05 -2.91 -0.02 3.30 16 16 C 0.01 0.86 5.52 85.28 0.47 1.34 16 17 N -0.84 -49.79 13.65 21.83 0.30 -49.49 16 18 Si 1.20 61.22 25.56 68.60 1.75 62.97 16 19 H -0.34 -16.82 7.11 99.48 0.71 -16.11 16 20 H -0.28 -13.95 6.67 99.48 0.66 -13.28 16 21 H -0.30 -14.95 7.11 99.48 0.71 -14.25 16 22 C -0.36 -17.28 9.72 22.99 0.22 -17.06 16 23 H 0.23 3.93 7.80 -4.41 -0.03 3.89 16 24 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.06 1.37 6.35 -2.39 -0.02 1.35 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.04 1.18 5.39 -2.39 -0.01 1.17 16 31 H 0.40 10.92 8.63 -92.71 -0.80 10.12 16 32 H 0.15 4.33 4.13 -2.91 -0.01 4.32 16 33 H 0.16 5.43 8.06 -2.91 -0.02 5.41 16 34 H 0.28 15.91 8.72 -92.70 -0.81 15.10 16 35 H 0.09 4.44 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -69.14 290.23 5.19 -63.95 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.21 Total: 13.13 kcal Atomic # 6 Polarization: -40.44 SS G_CDS: 5.34 Total: -35.10 kcal Atomic # 7 Polarization: -102.83 SS G_CDS: -2.12 Total: -104.95 kcal Atomic # 14 Polarization: 61.22 SS G_CDS: 1.75 Total: 62.97 kcal Total: -69.14 5.19 -63.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310015494.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.535 kcal (2) G-P(sol) polarization free energy of solvation -69.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds