Wall clock time and date at job start Mon Mar 30 2020 06:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47153 * 238.55614 * 3 2 1 5 5 H 1.08999 * 109.46910 * 305.00302 * 4 3 2 6 6 C 1.53000 * 109.46973 * 185.00262 * 4 3 2 7 7 C 1.53005 * 109.46695 * 175.00127 * 6 4 3 8 8 N 1.46500 * 109.46949 * 65.00253 * 4 3 2 9 9 C 1.39252 * 119.99444 * 204.99885 * 8 4 3 10 10 C 1.39708 * 120.78593 * 0.02562 * 9 8 4 11 11 C 1.38448 * 119.46860 * 179.97438 * 10 9 8 12 12 N 1.31531 * 121.11265 * 0.02562 * 11 10 9 13 13 C 1.33696 * 121.69954 * 359.97438 * 12 11 10 14 14 C 1.41454 * 119.80157 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00143 * 187.07373 * 14 13 12 16 16 C 1.40012 * 119.99636 * 7.07544 * 14 13 12 17 17 N 1.30742 * 120.00255 * 182.54827 * 16 14 13 18 18 Si 1.86805 * 120.00085 * 2.54053 * 16 14 13 19 19 H 1.48500 * 109.46971 * 180.02562 * 18 16 14 20 20 H 1.48495 * 109.47343 * 300.00524 * 18 16 14 21 21 H 1.48504 * 109.46850 * 60.00338 * 18 16 14 22 22 C 1.39029 * 120.77915 * 180.25438 * 9 8 4 23 23 H 4.44655 * 5.63379 * 180.02562 * 4 1 2 24 24 H 1.08998 * 109.46638 * 118.55869 * 3 2 1 25 25 H 1.08996 * 109.47090 * 358.55678 * 3 2 1 26 26 H 1.08997 * 109.46832 * 294.99579 * 6 4 3 27 27 H 1.08995 * 109.47409 * 54.99982 * 6 4 3 28 28 H 1.08997 * 109.47033 * 299.99329 * 7 6 4 29 29 H 1.08994 * 109.47545 * 60.00291 * 7 6 4 30 30 H 1.09000 * 109.46771 * 180.02562 * 7 6 4 31 31 H 0.96993 * 120.00374 * 25.00040 * 8 4 3 32 32 H 1.07992 * 120.26487 * 359.95154 * 10 9 8 33 33 H 1.08000 * 119.44633 * 180.02562 * 11 10 9 34 34 H 0.97010 * 119.99796 * 354.84283 * 17 16 14 35 35 H 1.08006 * 120.55957 * 0.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.7534 1.2306 5 1 2.7205 1.7525 1.2514 6 6 4.6804 0.8623 1.1665 7 6 5.1797 1.7211 2.3303 8 7 2.7685 0.0268 2.4424 9 6 2.6372 0.7075 3.6502 10 6 2.8702 2.0830 3.7248 11 6 2.7312 2.7324 4.9396 12 7 2.3838 2.0761 6.0253 13 6 2.1499 0.7599 6.0059 14 6 1.7791 0.0942 7.1977 15 1 1.7007 -0.9828 7.2126 16 6 1.5136 0.8316 8.3579 17 7 1.2195 0.2141 9.4721 18 14 1.5798 2.6980 8.3139 19 1 1.2628 3.2364 9.6611 20 1 2.9413 3.1358 7.9142 21 1 0.5884 3.2054 7.3316 22 6 2.2757 0.0333 4.8111 23 1 -1.0502 -0.0003 -0.0001 24 1 3.0090 0.4921 -0.9026 25 1 3.0098 -1.0265 0.0259 26 1 5.1190 -0.1332 1.2354 27 1 4.9724 1.3236 0.2232 28 1 4.7411 2.7165 2.2615 29 1 4.8878 1.2598 3.2737 30 1 6.2659 1.7990 2.2844 31 1 2.6036 -0.9282 2.4035 32 1 3.1568 2.6351 2.8421 33 1 2.9110 3.7958 4.9968 34 1 1.1117 -0.7500 9.4784 35 1 2.0913 -1.0307 4.7934 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310015495.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:35 Heat of formation + Delta-G solvation = 65.281574 kcal Electronic energy + Delta-G solvation = -17112.998167 eV Core-core repulsion = 14497.460599 eV Total energy + Delta-G solvation = -2615.537569 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.15412 -37.28411 -33.96668 -33.32498 -32.44513 -30.40114 -29.89256 -27.94251 -25.45098 -23.98755 -22.03423 -21.49125 -19.76999 -18.39529 -18.07155 -16.47025 -15.89709 -14.99978 -14.63571 -14.48187 -14.04034 -13.65635 -13.49490 -13.28580 -12.58958 -12.57211 -12.15855 -12.01093 -12.00687 -11.52413 -11.08626 -10.93788 -10.65161 -10.21608 -10.20046 -10.09680 -10.03444 -9.68518 -9.46500 -9.17864 -7.83629 -7.55624 -7.11481 -6.90293 -4.69062 2.69429 2.83047 2.85257 2.91702 3.71455 3.80240 3.91289 4.13799 4.33393 4.57056 4.76329 4.87375 5.12199 5.18332 5.37261 5.48947 5.63086 5.68759 5.81882 5.83432 5.93603 6.06005 6.13361 6.18707 6.31775 6.50558 6.69019 6.72165 6.89188 7.23912 7.36427 7.41064 7.55684 7.64984 8.10540 8.17859 8.30313 8.53286 8.78675 9.67046 10.11779 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029651 B = 0.006313 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.082384 B = 4433.894746 C = 4806.723665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C -0.019 4.019 4 C 0.161 3.839 5 H 0.081 0.919 6 C -0.135 4.135 7 C -0.155 4.155 8 N -0.742 5.742 9 C 0.273 3.727 10 C -0.365 4.365 11 C 0.171 3.829 12 N -0.595 5.595 13 C 0.278 3.722 14 C -0.479 4.479 15 H 0.077 0.923 16 C 0.044 3.956 17 N -0.812 5.812 18 Si 1.159 2.841 19 H -0.337 1.337 20 H -0.280 1.280 21 H -0.295 1.295 22 C -0.337 4.337 23 H 0.214 0.786 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.041 0.959 31 H 0.391 0.609 32 H 0.110 0.890 33 H 0.124 0.876 34 H 0.280 0.720 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.614 0.838 -16.490 16.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.184 4.184 3 C -0.056 4.056 4 C 0.054 3.946 5 H 0.099 0.901 6 C -0.174 4.174 7 C -0.212 4.212 8 N -0.374 5.374 9 C 0.167 3.833 10 C -0.392 4.392 11 C 0.010 3.990 12 N -0.317 5.317 13 C 0.155 3.845 14 C -0.511 4.511 15 H 0.095 0.905 16 C -0.176 4.176 17 N -0.433 5.433 18 Si 0.995 3.005 19 H -0.271 1.271 20 H -0.207 1.207 21 H -0.223 1.223 22 C -0.363 4.363 23 H 0.231 0.769 24 H 0.114 0.886 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.224 0.776 32 H 0.128 0.872 33 H 0.142 0.858 34 H 0.091 0.909 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.434 2.546 -14.832 15.436 hybrid contribution -0.070 -2.589 -1.911 3.219 sum 3.364 -0.043 -16.743 17.078 Atomic orbital electron populations 1.24860 0.95972 1.00791 1.00786 1.22902 0.94377 1.00653 1.00450 1.19050 0.85298 1.02176 0.99096 1.20789 0.93713 0.96487 0.83568 0.90074 1.22034 0.95532 1.00761 0.99083 1.22138 0.99342 0.99959 0.99775 1.44433 1.77852 1.09518 1.05563 1.17661 0.89710 0.91327 0.84619 1.20959 1.25587 0.93390 0.99274 1.21867 0.91160 0.97887 0.88117 1.66457 1.26489 1.09709 1.29003 1.18354 0.86636 0.87311 0.92197 1.20718 1.39923 0.95668 0.94755 0.90501 1.27829 0.88650 1.10889 0.90264 1.70668 1.31568 1.13117 1.27994 0.81731 0.78807 0.69672 0.70301 1.27139 1.20743 1.22349 1.20983 1.23501 0.99197 0.92669 0.76886 0.88613 0.89472 0.92025 0.91920 0.92337 0.90465 0.94023 0.77555 0.87203 0.85826 0.90857 0.88438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.60 19.25 29.55 0.57 -2.03 16 2 C -0.18 -2.37 13.06 -37.12 -0.48 -2.85 16 3 C -0.02 -0.20 5.25 -29.52 -0.16 -0.35 16 4 C 0.16 2.04 2.19 -67.93 -0.15 1.89 16 5 H 0.08 1.14 6.53 -51.93 -0.34 0.81 16 6 C -0.14 -1.54 5.61 -26.73 -0.15 -1.69 16 7 C -0.16 -2.11 8.22 37.16 0.31 -1.81 16 8 N -0.74 -11.84 4.87 -52.04 -0.25 -12.10 16 9 C 0.27 5.57 5.50 -83.65 -0.46 5.11 16 10 C -0.36 -7.27 6.82 -38.95 -0.27 -7.54 16 11 C 0.17 3.80 11.17 -17.60 -0.20 3.60 16 12 N -0.60 -15.42 4.55 -11.21 -0.05 -15.47 16 13 C 0.28 7.45 6.39 -85.02 -0.54 6.91 16 14 C -0.48 -13.57 9.58 -37.69 -0.36 -13.94 16 15 H 0.08 2.19 8.05 -52.49 -0.42 1.76 16 16 C 0.04 1.24 5.52 -17.35 -0.10 1.14 16 17 N -0.81 -22.93 13.65 55.55 0.76 -22.17 16 18 Si 1.16 29.54 25.56 -169.99 -4.34 25.19 16 19 H -0.34 -8.48 7.11 56.52 0.40 -8.08 16 20 H -0.28 -7.06 6.67 56.52 0.38 -6.69 16 21 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 22 C -0.34 -8.05 9.72 -38.47 -0.37 -8.42 16 23 H 0.21 2.03 7.80 -54.08 -0.42 1.61 16 24 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.78 6.35 -51.93 -0.33 0.45 16 29 H 0.08 1.32 5.39 -51.93 -0.28 1.04 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.39 5.89 8.63 -40.82 -0.35 5.54 16 32 H 0.11 1.90 4.13 -52.49 -0.22 1.68 16 33 H 0.12 2.35 8.06 -52.49 -0.42 1.92 16 34 H 0.28 7.59 8.72 -40.82 -0.36 7.24 16 35 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 LS Contribution 290.23 15.07 4.37 4.37 Total: -1.00 -30.55 290.23 -6.38 -36.93 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -4.50 Total: 3.21 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -2.36 Total: -19.97 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.45 Total: -49.74 kcal Atomic # 14 Polarization: 29.54 SS G_CDS: -4.34 Total: 25.19 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.55 -6.38 -36.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310015495.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.208 kcal (2) G-P(sol) polarization free energy of solvation -30.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds