Wall clock time and date at job start Mon Mar 30 2020 06:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47153 * 238.55614 * 3 2 1 5 5 H 1.08999 * 109.46910 * 305.00302 * 4 3 2 6 6 C 1.53000 * 109.46973 * 185.00262 * 4 3 2 7 7 C 1.53005 * 109.46695 * 175.00127 * 6 4 3 8 8 N 1.46500 * 109.46949 * 65.00253 * 4 3 2 9 9 C 1.39252 * 119.99444 * 204.99885 * 8 4 3 10 10 C 1.39708 * 120.78593 * 0.02562 * 9 8 4 11 11 C 1.38448 * 119.46860 * 179.97438 * 10 9 8 12 12 N 1.31531 * 121.11265 * 0.02562 * 11 10 9 13 13 C 1.33696 * 121.69954 * 359.97438 * 12 11 10 14 14 C 1.41454 * 119.80157 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00143 * 187.07373 * 14 13 12 16 16 C 1.40012 * 119.99636 * 7.07544 * 14 13 12 17 17 N 1.30742 * 120.00255 * 182.54827 * 16 14 13 18 18 Si 1.86805 * 120.00085 * 2.54053 * 16 14 13 19 19 H 1.48500 * 109.46971 * 180.02562 * 18 16 14 20 20 H 1.48495 * 109.47343 * 300.00524 * 18 16 14 21 21 H 1.48504 * 109.46850 * 60.00338 * 18 16 14 22 22 C 1.39029 * 120.77915 * 180.25438 * 9 8 4 23 23 H 4.44655 * 5.63379 * 180.02562 * 4 1 2 24 24 H 1.08998 * 109.46638 * 118.55869 * 3 2 1 25 25 H 1.08996 * 109.47090 * 358.55678 * 3 2 1 26 26 H 1.08997 * 109.46832 * 294.99579 * 6 4 3 27 27 H 1.08995 * 109.47409 * 54.99982 * 6 4 3 28 28 H 1.08997 * 109.47033 * 299.99329 * 7 6 4 29 29 H 1.08994 * 109.47545 * 60.00291 * 7 6 4 30 30 H 1.09000 * 109.46771 * 180.02562 * 7 6 4 31 31 H 0.96993 * 120.00374 * 25.00040 * 8 4 3 32 32 H 1.07992 * 120.26487 * 359.95154 * 10 9 8 33 33 H 1.08000 * 119.44633 * 180.02562 * 11 10 9 34 34 H 0.97010 * 119.99796 * 354.84283 * 17 16 14 35 35 H 1.08006 * 120.55957 * 0.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.7534 1.2306 5 1 2.7205 1.7525 1.2514 6 6 4.6804 0.8623 1.1665 7 6 5.1797 1.7211 2.3303 8 7 2.7685 0.0268 2.4424 9 6 2.6372 0.7075 3.6502 10 6 2.8702 2.0830 3.7248 11 6 2.7312 2.7324 4.9396 12 7 2.3838 2.0761 6.0253 13 6 2.1499 0.7599 6.0059 14 6 1.7791 0.0942 7.1977 15 1 1.7007 -0.9828 7.2126 16 6 1.5136 0.8316 8.3579 17 7 1.2195 0.2141 9.4721 18 14 1.5798 2.6980 8.3139 19 1 1.2628 3.2364 9.6611 20 1 2.9413 3.1358 7.9142 21 1 0.5884 3.2054 7.3316 22 6 2.2757 0.0333 4.8111 23 1 -1.0502 -0.0003 -0.0001 24 1 3.0090 0.4921 -0.9026 25 1 3.0098 -1.0265 0.0259 26 1 5.1190 -0.1332 1.2354 27 1 4.9724 1.3236 0.2232 28 1 4.7411 2.7165 2.2615 29 1 4.8878 1.2598 3.2737 30 1 6.2659 1.7990 2.2844 31 1 2.6036 -0.9282 2.4035 32 1 3.1568 2.6351 2.8421 33 1 2.9110 3.7958 4.9968 34 1 1.1117 -0.7500 9.4784 35 1 2.0913 -1.0307 4.7934 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310015495.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:33 Heat of formation + Delta-G solvation = 46.604861 kcal Electronic energy + Delta-G solvation = -17113.808050 eV Core-core repulsion = 14497.460599 eV Total energy + Delta-G solvation = -2616.347452 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.77601 -38.68514 -35.71535 -34.73127 -33.67773 -32.16656 -31.23375 -29.26689 -27.37471 -25.02282 -23.75534 -23.05089 -21.20121 -20.29303 -19.01753 -18.01515 -17.38292 -16.47446 -16.30676 -15.81441 -15.56386 -14.93598 -14.79103 -14.54742 -14.30688 -14.22810 -13.93562 -13.74381 -13.17400 -12.62567 -12.49009 -12.47199 -12.06361 -11.96161 -11.68397 -11.51895 -11.26686 -11.20189 -11.04336 -10.98280 -9.75716 -9.55010 -9.14558 -8.44134 -6.77337 0.81593 1.10228 1.65325 1.80471 1.87687 1.92499 2.12127 2.54589 2.60827 2.75971 3.48270 3.71390 3.92617 4.08127 4.16234 4.22215 4.48853 4.54453 4.65359 4.73359 4.76110 4.86947 4.90698 5.01386 5.12122 5.16348 5.21204 5.34693 5.42934 5.54269 5.56924 5.58819 5.67533 6.08773 6.31399 6.67451 6.72628 6.77114 6.94365 7.76956 8.02650 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029651 B = 0.006313 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.082384 B = 4433.894746 C = 4806.723665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.205 4.205 3 C -0.014 4.014 4 C 0.157 3.843 5 H 0.074 0.926 6 C -0.128 4.128 7 C -0.157 4.157 8 N -0.731 5.731 9 C 0.287 3.713 10 C -0.337 4.337 11 C 0.151 3.849 12 N -0.621 5.621 13 C 0.264 3.736 14 C -0.521 4.521 15 H 0.054 0.946 16 C 0.015 3.985 17 N -0.840 5.840 18 Si 1.196 2.804 19 H -0.336 1.336 20 H -0.277 1.277 21 H -0.298 1.298 22 C -0.359 4.359 23 H 0.231 0.769 24 H 0.129 0.871 25 H 0.103 0.897 26 H 0.066 0.934 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.054 0.946 31 H 0.396 0.604 32 H 0.147 0.853 33 H 0.159 0.841 34 H 0.276 0.724 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.902 2.239 -20.349 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.205 4.205 3 C -0.051 4.051 4 C 0.052 3.948 5 H 0.092 0.908 6 C -0.166 4.166 7 C -0.214 4.214 8 N -0.360 5.360 9 C 0.177 3.823 10 C -0.364 4.364 11 C -0.008 4.008 12 N -0.343 5.343 13 C 0.140 3.860 14 C -0.553 4.553 15 H 0.072 0.928 16 C -0.200 4.200 17 N -0.464 5.464 18 Si 1.030 2.970 19 H -0.270 1.270 20 H -0.205 1.205 21 H -0.226 1.226 22 C -0.386 4.386 23 H 0.248 0.752 24 H 0.147 0.853 25 H 0.121 0.879 26 H 0.085 0.915 27 H 0.117 0.883 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.231 0.769 32 H 0.164 0.836 33 H 0.176 0.824 34 H 0.086 0.914 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.740 3.937 -18.759 19.745 hybrid contribution -0.370 -3.013 -1.118 3.235 sum 4.371 0.924 -19.877 20.373 Atomic orbital electron populations 1.25589 0.97112 1.00858 1.00706 1.23603 0.95538 1.00719 1.00603 1.19161 0.83815 1.03170 0.98934 1.21058 0.94940 0.96039 0.82786 0.90783 1.21993 0.93828 1.01021 0.99808 1.22095 1.00489 1.00114 0.98705 1.44631 1.76164 1.10004 1.05220 1.17692 0.87672 0.91675 0.85251 1.21368 1.22033 0.93153 0.99812 1.22539 0.90688 0.99584 0.87964 1.66360 1.27682 1.09305 1.30980 1.18449 0.86724 0.88260 0.92543 1.20673 1.43500 0.94808 0.96362 0.92755 1.28588 0.88245 1.13038 0.90130 1.70691 1.34507 1.12884 1.28353 0.81226 0.78611 0.67166 0.70017 1.27042 1.20466 1.22619 1.21035 1.24865 0.99236 0.93431 0.75235 0.85309 0.87923 0.91535 0.88314 0.91960 0.94358 0.92731 0.76934 0.83602 0.82390 0.91354 0.88888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -5.13 19.25 74.32 1.43 -3.70 16 2 C -0.20 -4.59 13.06 31.13 0.41 -4.18 16 3 C -0.01 -0.23 5.25 28.79 0.15 -0.08 16 4 C 0.16 3.26 2.19 44.99 0.10 3.36 16 5 H 0.07 1.71 6.53 -2.39 -0.02 1.69 16 6 C -0.13 -2.24 5.61 30.60 0.17 -2.07 16 7 C -0.16 -3.62 8.22 71.98 0.59 -3.03 16 8 N -0.73 -21.13 4.87 -318.54 -1.55 -22.68 16 9 C 0.29 11.15 5.50 38.51 0.21 11.36 16 10 C -0.34 -12.38 6.82 22.68 0.15 -12.22 16 11 C 0.15 6.34 11.17 84.79 0.95 7.28 16 12 N -0.62 -31.91 4.55 -189.37 -0.86 -32.77 16 13 C 0.26 14.49 6.39 40.18 0.26 14.75 16 14 C -0.52 -31.07 9.58 23.49 0.23 -30.84 16 15 H 0.05 3.33 8.05 -2.91 -0.02 3.31 16 16 C 0.01 0.86 5.52 85.29 0.47 1.33 16 17 N -0.84 -49.78 13.65 21.83 0.30 -49.48 16 18 Si 1.20 61.26 25.56 68.60 1.75 63.02 16 19 H -0.34 -16.82 7.11 99.48 0.71 -16.11 16 20 H -0.28 -13.84 6.67 99.48 0.66 -13.18 16 21 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 22 C -0.36 -17.27 9.72 22.99 0.22 -17.04 16 23 H 0.23 3.94 7.80 -4.41 -0.03 3.90 16 24 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 1.36 6.35 -2.39 -0.02 1.35 16 29 H 0.04 1.18 5.39 -2.39 -0.01 1.17 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.40 10.93 8.63 -92.71 -0.80 10.13 16 32 H 0.15 4.33 4.13 -2.91 -0.01 4.32 16 33 H 0.16 5.43 8.06 -2.91 -0.02 5.41 16 34 H 0.28 15.91 8.72 -92.70 -0.81 15.10 16 35 H 0.09 4.44 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -69.12 290.23 5.19 -63.93 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.21 Total: 13.08 kcal Atomic # 6 Polarization: -40.43 SS G_CDS: 5.34 Total: -35.09 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -2.12 Total: -104.94 kcal Atomic # 14 Polarization: 61.26 SS G_CDS: 1.75 Total: 63.02 kcal Total: -69.12 5.19 -63.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310015495.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.535 kcal (2) G-P(sol) polarization free energy of solvation -69.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds