Wall clock time and date at job start Mon Mar 30 2020 06:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47009 * 2 1 4 4 H 1.08996 * 109.47282 * 55.34531 * 3 2 1 5 5 C 1.52996 * 109.47161 * 175.34542 * 3 2 1 6 6 C 1.47204 * 109.47403 * 185.00140 * 5 3 2 7 7 N 4.86400 * 126.42972 * 4.85171 * 2 1 3 8 8 N 1.46500 * 109.47245 * 295.34299 * 3 2 1 9 9 C 1.39685 * 119.99908 * 132.35544 * 8 3 2 10 10 C 1.39336 * 119.95261 * 16.29578 * 9 8 3 11 11 C 1.38481 * 120.42505 * 180.02562 * 10 9 8 12 12 C 1.37693 * 120.32381 * 359.97438 * 11 10 9 13 13 C 1.40747 * 119.89260 * 359.97438 * 12 11 10 14 14 C 1.41409 * 120.20639 * 179.72783 * 13 12 11 15 15 H 1.08006 * 120.00060 * 334.10401 * 14 13 12 16 16 C 1.39923 * 120.00094 * 154.10159 * 14 13 12 17 17 N 1.30835 * 120.00353 * 347.66239 * 16 14 13 18 18 Si 1.86805 * 119.99984 * 167.66324 * 16 14 13 19 19 H 1.48499 * 109.47328 * 89.99976 * 18 16 14 20 20 H 1.48499 * 109.46814 * 210.00092 * 18 16 14 21 21 H 1.48500 * 109.46981 * 329.99895 * 18 16 14 22 22 C 1.38286 * 119.95157 * 196.28383 * 9 8 3 23 23 H 1.09008 * 109.47115 * 65.26704 * 1 2 3 24 24 H 1.08995 * 109.46764 * 185.26695 * 1 2 3 25 25 H 1.08995 * 109.47064 * 305.26450 * 1 2 3 26 26 H 1.09004 * 109.47362 * 240.00524 * 2 1 3 27 27 H 1.08995 * 109.47430 * 119.99834 * 2 1 3 28 28 H 1.09005 * 109.47259 * 305.00074 * 5 3 2 29 29 H 1.08998 * 109.47782 * 65.00043 * 5 3 2 30 30 H 0.96995 * 120.00217 * 312.34930 * 8 3 2 31 31 H 1.07996 * 119.78563 * 0.02562 * 10 9 8 32 32 H 1.07997 * 119.83618 * 179.97438 * 11 10 9 33 33 H 1.07997 * 120.05233 * 180.02562 * 12 11 10 34 34 H 0.96997 * 120.00066 * 179.97438 * 17 16 14 35 35 H 1.07999 * 120.15792 * 0.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6102 1.9798 0.8453 5 6 3.5655 1.4441 0.1171 6 6 4.0469 2.8300 0.2378 7 7 4.4184 3.8995 0.3310 8 7 1.6454 2.1000 -1.2483 9 6 1.0613 3.3684 -1.2152 10 6 1.1579 4.1490 -0.0650 11 6 0.5821 5.4077 -0.0213 12 6 -0.0924 5.9020 -1.1153 13 6 -0.1972 5.1254 -2.2844 14 6 -0.8933 5.6242 -3.4098 15 1 -1.6737 6.3595 -3.2798 16 6 -0.5709 5.1653 -4.6917 17 7 0.5194 4.4676 -4.8819 18 14 -1.6973 5.5488 -6.1317 19 1 -1.2831 6.8307 -6.7566 20 1 -1.6075 4.4574 -7.1347 21 1 -3.0969 5.6632 -5.6486 22 6 0.3882 3.8478 -2.3240 23 1 -0.3634 0.4300 -0.9335 24 1 -0.3633 -1.0233 0.0943 25 1 -0.3633 0.5933 0.8390 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8628 0.8780 0.9999 29 1 3.9987 0.9852 -0.7716 30 1 1.7897 1.6546 -2.0977 31 1 1.6852 3.7700 0.7978 32 1 0.6624 6.0044 0.8752 33 1 -0.5394 6.8843 -1.0765 34 1 0.7427 4.1492 -5.7705 35 1 0.3126 3.2435 -3.2160 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313431700.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:18 Heat of formation + Delta-G solvation = 15.942757 kcal Electronic energy + Delta-G solvation = -17112.738573 eV Core-core repulsion = 14495.061513 eV Total energy + Delta-G solvation = -2617.677060 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.00332 -38.23386 -36.82009 -35.41984 -33.47548 -31.41506 -31.31124 -28.84828 -27.14437 -25.20599 -23.17194 -22.15474 -21.17776 -19.14331 -18.45010 -17.50503 -16.77867 -16.41921 -16.22719 -15.63259 -15.12407 -14.84607 -14.61698 -14.16835 -14.05936 -13.76706 -13.53182 -13.44823 -13.11513 -12.78497 -12.74684 -12.62958 -12.35499 -12.21436 -11.94742 -11.78870 -11.58052 -11.47857 -11.24309 -11.06146 -10.43049 -9.21746 -8.58301 -7.87659 -6.33474 1.08446 1.31344 1.37733 1.50568 1.57448 1.98698 2.04093 2.23343 2.82950 2.90195 3.28572 3.84515 4.03018 4.28554 4.33331 4.48791 4.60988 4.73218 4.78224 4.82797 4.97311 5.04021 5.13063 5.20196 5.24319 5.32722 5.37313 5.51321 5.59591 5.64705 5.98559 6.09806 6.22720 6.27417 6.59649 6.84626 6.96272 7.05899 7.12736 7.31356 8.41082 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.023595 B = 0.006700 C = 0.006136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.432014 B = 4178.291439 C = 4561.800624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.154 3.846 4 H 0.076 0.924 5 C -0.039 4.039 6 C 0.224 3.776 7 N -0.504 5.504 8 N -0.747 5.747 9 C 0.226 3.774 10 C -0.285 4.285 11 C -0.074 4.074 12 C -0.285 4.285 13 C 0.103 3.897 14 C -0.503 4.503 15 H 0.067 0.933 16 C 0.035 3.965 17 N -0.826 5.826 18 Si 0.981 3.019 19 H -0.266 1.266 20 H -0.263 1.263 21 H -0.261 1.261 22 C -0.248 4.248 23 H 0.030 0.970 24 H 0.068 0.932 25 H 0.041 0.959 26 H 0.083 0.917 27 H 0.109 0.891 28 H 0.160 0.840 29 H 0.131 0.869 30 H 0.396 0.604 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.284 0.716 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.833 -13.988 5.981 15.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C 0.047 3.953 4 H 0.094 0.906 5 C -0.080 4.080 6 C -0.092 4.092 7 N -0.182 5.182 8 N -0.380 5.380 9 C 0.126 3.874 10 C -0.308 4.308 11 C -0.093 4.093 12 C -0.305 4.305 13 C 0.100 3.900 14 C -0.534 4.534 15 H 0.085 0.915 16 C -0.179 4.179 17 N -0.453 5.453 18 Si 0.802 3.198 19 H -0.191 1.191 20 H -0.187 1.187 21 H -0.185 1.185 22 C -0.272 4.272 23 H 0.050 0.950 24 H 0.087 0.913 25 H 0.060 0.940 26 H 0.101 0.899 27 H 0.128 0.872 28 H 0.178 0.822 29 H 0.149 0.851 30 H 0.231 0.769 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.572 -12.540 6.142 14.413 hybrid contribution -0.609 0.426 -1.121 1.345 sum 2.963 -12.114 5.021 13.444 Atomic orbital electron populations 1.21698 0.96855 1.01460 1.00779 1.21807 0.95286 0.93430 1.04900 1.21079 0.91542 0.95035 0.87657 0.90627 1.20293 0.96285 0.82962 1.08476 1.29980 0.91915 0.95893 0.91450 1.81214 1.11808 1.14040 1.11169 1.44538 1.69407 1.15999 1.08012 1.17601 0.90953 0.85672 0.93218 1.20145 1.14644 0.97229 0.98768 1.20599 0.96524 0.95518 0.96675 1.20990 1.12399 1.00186 0.96943 1.17754 0.89437 0.90876 0.91930 1.19782 1.18623 1.22920 0.92038 0.91464 1.26685 0.95758 0.92842 1.02621 1.69894 1.21647 1.28911 1.24849 0.85228 0.78997 0.78906 0.76643 1.19130 1.18709 1.18503 1.20854 1.09790 0.97805 0.98737 0.95034 0.91287 0.93986 0.89871 0.87248 0.82222 0.85088 0.76912 0.87868 0.87812 0.89803 0.90536 0.87339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.73 71.98 0.70 -2.38 16 2 C -0.12 -1.68 5.61 30.59 0.17 -1.51 16 3 C 0.15 3.33 2.08 44.99 0.09 3.42 16 4 H 0.08 1.93 6.04 -2.39 -0.01 1.91 16 5 C -0.04 -0.63 5.39 28.79 0.16 -0.48 16 6 C 0.22 6.59 13.41 89.44 1.20 7.79 16 7 N -0.50 -19.44 18.54 20.01 0.37 -19.06 16 8 N -0.75 -24.07 4.32 -319.12 -1.38 -25.45 16 9 C 0.23 10.18 6.51 38.17 0.25 10.42 16 10 C -0.29 -12.92 8.47 22.59 0.19 -12.73 16 11 C -0.07 -3.64 10.02 22.20 0.22 -3.41 16 12 C -0.28 -15.47 9.79 22.75 0.22 -15.25 16 13 C 0.10 5.94 5.57 -21.31 -0.12 5.82 16 14 C -0.50 -28.88 9.07 23.46 0.21 -28.67 16 15 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 16 C 0.03 1.82 5.24 85.25 0.45 2.27 16 17 N -0.83 -44.35 10.75 21.82 0.23 -44.11 16 18 Si 0.98 39.88 29.58 68.60 2.03 41.91 16 19 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 20 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 21 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 22 C -0.25 -13.24 8.54 22.86 0.20 -13.04 16 23 H 0.03 0.83 7.89 -2.38 -0.02 0.82 16 24 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.16 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.40 12.14 8.86 -92.71 -0.82 11.32 16 31 H 0.10 4.19 5.35 -2.91 -0.02 4.17 16 32 H 0.10 4.51 8.06 -2.91 -0.02 4.48 16 33 H 0.08 4.42 8.06 -2.91 -0.02 4.40 16 34 H 0.28 13.75 8.30 -92.71 -0.77 12.98 16 35 H 0.11 5.99 6.07 -2.91 -0.02 5.97 16 Total: -1.00 -72.58 299.27 5.48 -67.11 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 0.28 Total: 27.37 kcal Atomic # 6 Polarization: -51.70 SS G_CDS: 3.94 Total: -47.76 kcal Atomic # 7 Polarization: -87.86 SS G_CDS: -0.77 Total: -88.63 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -72.58 5.48 -67.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313431700.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.051 kcal (2) G-P(sol) polarization free energy of solvation -72.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds