Wall clock time and date at job start Mon Mar 30 2020 06:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47361 * 2 1 4 4 C 1.47201 * 109.46924 * 239.99925 * 2 1 3 5 5 N 2.60803 * 109.47003 * 240.00034 * 2 1 3 6 6 C 1.52999 * 109.47127 * 120.00026 * 2 1 3 7 7 N 1.46898 * 109.47163 * 294.99916 * 6 2 1 8 8 C 1.46906 * 110.99954 * 179.97438 * 7 6 2 9 9 H 1.09000 * 109.47097 * 325.00413 * 8 7 6 10 10 C 1.50694 * 109.46813 * 85.00313 * 8 7 6 11 11 H 1.08005 * 119.99852 * 234.79700 * 10 8 7 12 12 C 1.37879 * 120.00298 * 54.79554 * 10 8 7 13 13 N 1.31513 * 120.00125 * 2.51464 * 12 10 8 14 14 Si 1.86802 * 119.99908 * 182.51343 * 12 10 8 15 15 H 1.48501 * 109.47301 * 90.00568 * 14 12 10 16 16 H 1.48508 * 109.46794 * 209.99909 * 14 12 10 17 17 H 1.48500 * 109.47210 * 329.99822 * 14 12 10 18 18 C 1.50701 * 109.46864 * 205.00008 * 8 7 6 19 19 C 1.38239 * 119.99430 * 150.23556 * 18 8 7 20 20 C 1.38241 * 119.99395 * 179.78938 * 19 18 8 21 21 C 1.38236 * 120.00165 * 0.43248 * 20 19 18 22 22 C 1.38235 * 119.99698 * 359.82035 * 21 20 19 23 23 C 1.38228 * 120.00405 * 359.97438 * 22 21 20 24 24 H 1.08998 * 109.47021 * 60.00045 * 1 2 3 25 25 H 1.08998 * 109.46875 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46721 * 299.99997 * 1 2 3 27 27 H 1.09004 * 109.47076 * 55.00051 * 6 2 1 28 28 H 1.09002 * 109.47211 * 174.99763 * 6 2 1 29 29 H 1.00893 * 110.99985 * 303.95569 * 7 6 2 30 30 H 0.97001 * 120.00316 * 180.02562 * 13 12 10 31 31 H 1.07997 * 120.00151 * 359.97438 * 19 18 8 32 32 H 1.08001 * 119.99836 * 180.27595 * 20 19 18 33 33 H 1.07995 * 119.99675 * 179.83633 * 21 20 19 34 34 H 1.08007 * 119.99400 * 179.97438 * 22 21 20 35 35 H 1.08001 * 120.00151 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6939 -1.2019 5 7 2.3993 -1.2294 -2.1295 6 6 2.0400 -0.7213 1.2492 7 7 1.6514 0.0374 2.4456 8 6 2.1248 -0.6272 3.6672 9 1 2.0808 -1.7080 3.5332 10 6 3.5467 -0.2130 3.9455 11 1 4.3137 -0.9635 4.0678 12 6 3.8686 1.1241 4.0441 13 7 2.9266 2.0363 3.9445 14 14 5.6429 1.6398 4.3191 15 1 6.3119 1.8308 3.0072 16 1 5.6755 2.9139 5.0815 17 1 6.3516 0.5849 5.0875 18 6 1.2493 -0.2287 4.8273 19 6 1.0583 -1.1028 5.8811 20 6 0.2587 -0.7355 6.9473 21 6 -0.3571 0.5021 6.9555 22 6 -0.1702 1.3739 5.8991 23 6 0.6328 1.0085 4.8350 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.6054 -1.7198 1.2951 28 1 3.1264 -0.7995 1.2056 29 1 1.9882 0.9872 2.3966 30 1 3.1531 2.9770 4.0135 31 1 1.5362 -2.0712 5.8729 32 1 0.1130 -1.4166 7.7728 33 1 -0.9839 0.7878 7.7872 34 1 -0.6517 2.3407 5.9053 35 1 0.7791 1.6898 4.0099 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381344032.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:34 Heat of formation + Delta-G solvation = 34.154037 kcal Electronic energy + Delta-G solvation = -17235.524016 eV Core-core repulsion = 14618.636656 eV Total energy + Delta-G solvation = -2616.887360 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.86216 -38.55601 -37.01326 -35.02320 -33.02931 -31.37797 -30.94148 -28.28416 -26.47948 -24.48241 -23.30179 -22.43112 -21.46808 -18.71895 -18.06440 -17.33600 -16.81626 -15.98473 -15.79916 -15.51167 -15.23931 -14.75014 -14.55979 -13.98931 -13.89068 -13.75947 -13.50063 -13.34439 -13.14996 -12.87827 -12.79086 -12.57817 -12.43528 -12.13435 -12.00382 -11.79539 -11.55882 -11.33504 -11.15366 -10.57507 -9.34246 -9.03503 -8.79722 -7.91321 -6.25619 0.97093 1.11155 1.39575 1.45442 1.50451 1.73894 1.78850 2.42367 2.95945 3.14918 3.48127 3.99425 4.11283 4.35832 4.45881 4.46629 4.49331 4.67585 4.87297 4.89145 5.02555 5.08193 5.15670 5.22389 5.32030 5.32897 5.56779 5.60863 5.71162 5.78096 6.01047 6.12425 6.18637 6.41905 6.56225 6.57078 6.68635 6.99170 7.26644 7.49168 8.87815 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.016216 B = 0.008853 C = 0.006522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.285025 B = 3162.104463 C = 4292.362753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.013 3.987 3 H 0.122 0.878 4 C 0.244 3.756 5 N -0.493 5.493 6 C 0.076 3.924 7 N -0.674 5.674 8 C 0.240 3.760 9 H 0.028 0.972 10 C -0.561 4.561 11 H 0.039 0.961 12 C 0.047 3.953 13 N -0.876 5.876 14 Si 0.934 3.066 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.285 1.285 18 C -0.042 4.042 19 C -0.153 4.153 20 C -0.144 4.144 21 C -0.151 4.151 22 C -0.155 4.155 23 C -0.066 4.066 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.012 0.988 29 H 0.359 0.641 30 H 0.268 0.732 31 H 0.106 0.894 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.121 0.879 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.571 0.502 0.236 6.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.009 4.009 3 H 0.140 0.860 4 C -0.073 4.073 5 N -0.170 5.170 6 C -0.055 4.055 7 N -0.309 5.309 8 C 0.131 3.869 9 H 0.047 0.953 10 C -0.600 4.600 11 H 0.057 0.943 12 C -0.156 4.156 13 N -0.514 5.514 14 Si 0.762 3.238 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.211 1.211 18 C -0.043 4.043 19 C -0.171 4.171 20 C -0.162 4.162 21 C -0.169 4.169 22 C -0.173 4.173 23 C -0.085 4.085 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.104 0.896 27 H 0.083 0.917 28 H 0.030 0.970 29 H 0.184 0.816 30 H 0.079 0.921 31 H 0.124 0.876 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.139 0.861 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.643 -0.360 -1.145 6.751 hybrid contribution 2.332 0.574 0.632 2.483 sum -4.312 0.214 -0.513 4.347 Atomic orbital electron populations 1.21648 0.89871 1.03077 1.03743 1.18955 0.98818 0.98913 0.84171 0.86037 1.29620 0.91477 0.92239 0.93940 1.81157 1.10995 1.11295 1.13544 1.21671 0.96851 0.97408 0.89594 1.60898 1.62196 1.07869 0.99953 1.17981 0.89826 0.92592 0.86488 0.95343 1.21829 0.94813 0.92324 1.51014 0.94278 1.25340 0.99508 0.96610 0.94092 1.69664 1.31615 1.01143 1.48932 0.85938 0.82477 0.77391 0.77973 1.20377 1.20876 1.21077 1.20224 0.93423 0.94334 0.96368 1.21056 1.00750 0.99809 0.95518 1.21107 0.99169 0.97497 0.98414 1.21161 1.01898 0.94684 0.99148 1.21378 1.00617 0.99862 0.95410 1.21272 0.92962 0.95609 0.98656 0.91087 0.92294 0.89567 0.91652 0.96951 0.81631 0.92148 0.87586 0.85276 0.85100 0.86087 0.84854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.04 71.98 0.65 -2.19 16 2 C 0.01 0.36 2.91 -12.60 -0.04 0.32 16 3 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 4 C 0.24 7.31 14.65 89.44 1.31 8.62 16 5 N -0.49 -16.92 18.54 20.01 0.37 -16.55 16 6 C 0.08 2.59 4.83 86.30 0.42 3.01 16 7 N -0.67 -26.28 4.85 -499.35 -2.42 -28.70 16 8 C 0.24 10.72 2.50 43.42 0.11 10.83 16 9 H 0.03 1.27 7.74 -2.39 -0.02 1.25 16 10 C -0.56 -27.76 8.62 25.60 0.22 -27.54 16 11 H 0.04 2.02 7.81 -2.91 -0.02 2.00 16 12 C 0.05 2.28 5.06 84.66 0.43 2.71 16 13 N -0.88 -41.01 7.97 21.45 0.17 -40.84 16 14 Si 0.93 40.24 29.54 68.60 2.03 42.26 16 15 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 16 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 17 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 18 C -0.04 -1.85 4.79 -19.86 -0.10 -1.95 16 19 C -0.15 -6.15 9.70 22.27 0.22 -5.93 16 20 C -0.14 -5.04 10.05 22.27 0.22 -4.82 16 21 C -0.15 -5.11 10.05 22.27 0.22 -4.88 16 22 C -0.15 -5.71 10.05 22.27 0.22 -5.48 16 23 C -0.07 -2.79 7.66 22.27 0.17 -2.62 16 24 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.09 2.11 7.75 -2.39 -0.02 2.09 16 27 H 0.07 2.15 8.05 -2.38 -0.02 2.13 16 28 H 0.01 0.47 8.00 -2.39 -0.02 0.45 16 29 H 0.36 14.99 5.53 -89.70 -0.50 14.50 16 30 H 0.27 12.17 8.31 -92.71 -0.77 11.40 16 31 H 0.11 4.05 8.06 -2.91 -0.02 4.03 16 32 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 33 H 0.13 3.54 8.06 -2.91 -0.02 3.51 16 34 H 0.12 3.87 8.06 -2.91 -0.02 3.85 16 35 H 0.13 5.84 5.59 -2.91 -0.02 5.83 16 Total: -1.00 -52.65 297.56 4.80 -47.86 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.59 Total: 25.90 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 4.06 Total: -29.93 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -1.88 Total: -86.09 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.26 kcal Total: -52.65 4.80 -47.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381344032.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.011 kcal (2) G-P(sol) polarization free energy of solvation -52.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds