Wall clock time and date at job start Mon Mar 30 2020 07:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 110.99959 * 2 1 4 4 C 1.50699 * 109.46880 * 180.02562 * 3 2 1 5 5 C 1.34235 * 126.49813 * 260.01963 * 4 3 2 6 6 N 1.36835 * 109.92997 * 180.02562 * 5 4 3 7 7 C 1.46497 * 125.06450 * 179.74136 * 6 5 4 8 8 C 1.50698 * 109.47017 * 265.02050 * 7 6 5 9 9 H 1.08003 * 120.00067 * 0.02562 * 8 7 6 10 10 C 1.37884 * 120.00117 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99997 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 119.99823 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47202 * 89.99872 * 12 10 8 14 14 H 1.48503 * 109.47049 * 209.99656 * 12 10 8 15 15 H 1.48498 * 109.47330 * 330.00069 * 12 10 8 16 16 C 1.37681 * 109.87094 * 0.02562 * 6 5 4 17 17 C 1.39133 * 133.50631 * 179.97438 * 16 6 5 18 18 C 1.37740 * 119.77988 * 179.97438 * 17 16 6 19 19 C 1.38832 * 120.66938 * 0.04294 * 18 17 16 20 20 C 1.36624 * 120.52378 * 359.97438 * 19 18 17 21 21 C 1.39626 * 119.76783 * 0.02562 * 20 19 18 22 22 H 1.08995 * 109.46997 * 299.99777 * 1 2 3 23 23 H 1.08997 * 109.47388 * 60.00398 * 1 2 3 24 24 H 1.09009 * 109.46874 * 179.97438 * 1 2 3 25 25 H 1.00895 * 110.99973 * 123.95752 * 2 1 3 26 26 H 1.09003 * 109.46741 * 59.99976 * 3 2 1 27 27 H 1.09001 * 109.47136 * 300.00184 * 3 2 1 28 28 H 1.07998 * 125.04096 * 0.02990 * 5 4 3 29 29 H 1.09000 * 109.47142 * 25.02148 * 7 6 5 30 30 H 1.09000 * 109.46982 * 145.02302 * 7 6 5 31 31 H 0.96991 * 119.99781 * 180.02562 * 11 10 8 32 32 H 1.08004 * 120.10731 * 0.02562 * 17 16 6 33 33 H 1.08006 * 119.66468 * 180.02562 * 18 17 16 34 34 H 1.07998 * 119.74050 * 179.97438 * 19 18 17 35 35 H 1.08006 * 120.11161 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5019 1.3312 -0.0006 5 6 4.3055 1.4967 1.0618 6 7 5.6146 1.3947 0.6769 7 6 6.7675 1.5269 1.5710 8 6 7.2736 2.9458 1.5316 9 1 6.7850 3.6761 0.9036 10 6 8.3598 3.3119 2.2980 11 7 8.8011 4.5503 2.2639 12 14 9.2044 2.0488 3.3846 13 1 10.2855 1.3795 2.6173 14 1 9.7860 2.7264 4.5711 15 1 8.2132 1.0363 3.8291 16 6 5.6870 1.1556 -0.6771 17 6 6.7447 0.9730 -1.5623 18 6 6.4888 0.7454 -2.8965 19 6 5.1843 0.6968 -3.3690 20 6 4.1307 0.8738 -2.5174 21 6 4.3671 1.1058 -1.1610 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 1.8306 -0.5261 0.7813 26 1 1.6459 1.8948 0.8900 27 1 1.6459 1.8948 -0.8900 28 1 3.9688 1.6827 2.0710 29 1 6.4687 1.2758 2.5887 30 1 7.5580 0.8500 1.2469 31 1 9.5654 4.8077 2.8028 32 1 7.7631 1.0089 -1.2044 33 1 7.3113 0.6035 -3.5819 34 1 5.0008 0.5178 -4.4182 35 1 3.1185 0.8342 -2.8922 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381464625.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:07 Heat of formation + Delta-G solvation = 58.071137 kcal Electronic energy + Delta-G solvation = -16959.756719 eV Core-core repulsion = 14343.906483 eV Total energy + Delta-G solvation = -2615.850237 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.65330 -36.51909 -35.93324 -33.35885 -31.86582 -29.79155 -28.79985 -27.91658 -25.69234 -23.36472 -22.57797 -21.77104 -20.47497 -18.92004 -17.14649 -16.41168 -15.92629 -15.27714 -14.77441 -14.61913 -14.35143 -14.00009 -13.49528 -13.22563 -13.19193 -12.59270 -12.48677 -12.15972 -11.81852 -11.65314 -11.62497 -11.27936 -10.97151 -10.84770 -10.69471 -10.15759 -10.10724 -9.66285 -8.90077 -8.82407 -8.32007 -7.50428 -6.87884 -6.30866 -4.34703 1.75718 2.28226 3.10703 3.17311 3.19253 3.24287 3.75618 4.17048 4.47822 4.67325 4.97832 5.20523 5.28478 5.39740 5.41644 5.51541 5.59548 5.67188 5.78803 5.84296 5.91603 6.12558 6.23795 6.37812 6.40016 6.46991 6.49259 6.73105 7.06962 7.11823 7.19508 7.25862 7.42206 7.46970 7.52526 7.97376 8.01633 8.30802 8.75037 9.25133 10.81585 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022249 B = 0.006824 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.190265 B = 4101.950888 C = 4956.167081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.691 5.691 3 C 0.144 3.856 4 C -0.205 4.205 5 C 0.079 3.921 6 N -0.449 5.449 7 C 0.208 3.792 8 C -0.546 4.546 9 H 0.081 0.919 10 C 0.079 3.921 11 N -0.886 5.886 12 Si 0.874 3.126 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.265 1.265 16 C 0.105 3.895 17 C -0.113 4.113 18 C -0.117 4.117 19 C -0.159 4.159 20 C -0.072 4.072 21 C -0.093 4.093 22 H 0.017 0.983 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.341 0.659 26 H 0.031 0.969 27 H 0.073 0.927 28 H 0.157 0.843 29 H 0.043 0.957 30 H 0.036 0.964 31 H 0.269 0.731 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.565 -8.678 -4.284 14.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.321 5.321 3 C 0.015 3.985 4 C -0.213 4.213 5 C -0.052 4.052 6 N -0.126 5.126 7 C 0.089 3.911 8 C -0.584 4.584 9 H 0.099 0.901 10 C -0.125 4.125 11 N -0.522 5.522 12 Si 0.700 3.300 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.190 1.190 16 C -0.003 4.003 17 C -0.133 4.133 18 C -0.136 4.136 19 C -0.178 4.178 20 C -0.091 4.091 21 C -0.098 4.098 22 H 0.036 0.964 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.158 0.842 26 H 0.049 0.951 27 H 0.091 0.909 28 H 0.175 0.825 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.129 0.871 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.082 -8.570 -4.627 14.018 hybrid contribution 0.514 -0.093 1.652 1.733 sum -9.568 -8.662 -2.975 13.245 Atomic orbital electron populations 1.22179 0.88611 1.01370 1.00065 1.60464 1.06574 1.14880 1.50207 1.20044 0.89724 0.88673 1.00055 1.19783 0.93402 1.16181 0.91966 1.21564 0.82863 1.01980 0.98792 1.44311 1.06311 1.55895 1.06065 1.20027 0.83103 0.99073 0.88941 1.21247 1.15290 0.93455 1.28361 0.90079 1.24846 0.96228 0.95330 0.96146 1.69877 1.25234 1.17038 1.40096 0.86892 0.80538 0.81754 0.80841 1.19647 1.20550 1.18984 1.18259 0.95025 1.02866 0.84144 1.20114 0.97284 1.03531 0.92385 1.20649 0.96535 1.02156 0.94298 1.20447 0.92673 1.05790 0.98887 1.20079 0.98314 0.99337 0.91326 1.18918 0.91645 1.05928 0.93292 0.96443 0.91951 0.91858 0.84194 0.95105 0.90895 0.82537 0.93872 0.94562 0.92118 0.86335 0.86666 0.87085 0.86964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.70 60.06 0.64 0.92 16 2 N -0.69 -8.88 6.84 -122.42 -0.84 -9.72 16 3 C 0.14 2.03 6.21 -4.97 -0.03 2.00 16 4 C -0.21 -3.62 5.83 -102.71 -0.60 -4.22 16 5 C 0.08 1.48 11.19 -16.73 -0.19 1.29 16 6 N -0.45 -9.70 2.76 -115.71 -0.32 -10.02 16 7 C 0.21 4.82 4.82 -5.20 -0.03 4.80 16 8 C -0.55 -14.97 9.94 -34.44 -0.34 -15.31 16 9 H 0.08 2.52 8.06 -52.48 -0.42 2.10 16 10 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 11 N -0.89 -26.13 13.96 55.43 0.77 -25.35 16 12 Si 0.87 20.00 27.47 -169.99 -4.67 15.33 16 13 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 15 H -0.27 -5.73 6.54 56.52 0.37 -5.36 16 16 C 0.11 2.23 6.81 -83.99 -0.57 1.66 16 17 C -0.11 -2.23 10.00 -39.43 -0.39 -2.63 16 18 C -0.12 -1.97 10.01 -39.54 -0.40 -2.37 16 19 C -0.16 -2.54 9.97 -39.94 -0.40 -2.94 16 20 C -0.07 -1.23 10.05 -39.65 -0.40 -1.63 16 21 C -0.09 -1.80 6.35 -105.14 -0.67 -2.46 16 22 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 25 H 0.34 4.21 8.81 -39.29 -0.35 3.86 16 26 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.16 2.52 8.06 -52.49 -0.42 2.10 16 29 H 0.04 0.95 7.17 -51.93 -0.37 0.58 16 30 H 0.04 0.82 7.57 -51.93 -0.39 0.43 16 31 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.12 2.34 8.06 -52.48 -0.42 1.91 16 33 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 34 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 35 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 300.06 15.07 4.52 4.52 Total: -1.00 -30.03 300.06 -8.93 -38.95 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.93 Total: 5.11 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -3.47 Total: -18.82 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: -0.38 Total: -45.09 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.67 Total: 15.33 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.03 -8.93 -38.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381464625.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.026 kcal (2) G-P(sol) polarization free energy of solvation -30.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds