Wall clock time and date at job start Mon Mar 30 2020 07:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 110.99959 * 2 1 4 4 C 1.50699 * 109.46880 * 180.02562 * 3 2 1 5 5 C 1.34235 * 126.49813 * 260.01963 * 4 3 2 6 6 N 1.36835 * 109.92997 * 180.02562 * 5 4 3 7 7 C 1.46497 * 125.06450 * 179.74136 * 6 5 4 8 8 C 1.50698 * 109.47017 * 265.02050 * 7 6 5 9 9 H 1.08003 * 120.00067 * 0.02562 * 8 7 6 10 10 C 1.37884 * 120.00117 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99997 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 119.99823 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47202 * 89.99872 * 12 10 8 14 14 H 1.48503 * 109.47049 * 209.99656 * 12 10 8 15 15 H 1.48498 * 109.47330 * 330.00069 * 12 10 8 16 16 C 1.37681 * 109.87094 * 0.02562 * 6 5 4 17 17 C 1.39133 * 133.50631 * 179.97438 * 16 6 5 18 18 C 1.37740 * 119.77988 * 179.97438 * 17 16 6 19 19 C 1.38832 * 120.66938 * 0.04294 * 18 17 16 20 20 C 1.36624 * 120.52378 * 359.97438 * 19 18 17 21 21 C 1.39626 * 119.76783 * 0.02562 * 20 19 18 22 22 H 1.08995 * 109.46997 * 299.99777 * 1 2 3 23 23 H 1.08997 * 109.47388 * 60.00398 * 1 2 3 24 24 H 1.09009 * 109.46874 * 179.97438 * 1 2 3 25 25 H 1.00895 * 110.99973 * 123.95752 * 2 1 3 26 26 H 1.09003 * 109.46741 * 59.99976 * 3 2 1 27 27 H 1.09001 * 109.47136 * 300.00184 * 3 2 1 28 28 H 1.07998 * 125.04096 * 0.02990 * 5 4 3 29 29 H 1.09000 * 109.47142 * 25.02148 * 7 6 5 30 30 H 1.09000 * 109.46982 * 145.02302 * 7 6 5 31 31 H 0.96991 * 119.99781 * 180.02562 * 11 10 8 32 32 H 1.08004 * 120.10731 * 0.02562 * 17 16 6 33 33 H 1.08006 * 119.66468 * 180.02562 * 18 17 16 34 34 H 1.07998 * 119.74050 * 179.97438 * 19 18 17 35 35 H 1.08006 * 120.11161 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5019 1.3312 -0.0006 5 6 4.3055 1.4967 1.0618 6 7 5.6146 1.3947 0.6769 7 6 6.7675 1.5269 1.5710 8 6 7.2736 2.9458 1.5316 9 1 6.7850 3.6761 0.9036 10 6 8.3598 3.3119 2.2980 11 7 8.8011 4.5503 2.2639 12 14 9.2044 2.0488 3.3846 13 1 10.2855 1.3795 2.6173 14 1 9.7860 2.7264 4.5711 15 1 8.2132 1.0363 3.8291 16 6 5.6870 1.1556 -0.6771 17 6 6.7447 0.9730 -1.5623 18 6 6.4888 0.7454 -2.8965 19 6 5.1843 0.6968 -3.3690 20 6 4.1307 0.8738 -2.5174 21 6 4.3671 1.1058 -1.1610 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 1.8306 -0.5261 0.7813 26 1 1.6459 1.8948 0.8900 27 1 1.6459 1.8948 -0.8900 28 1 3.9688 1.6827 2.0710 29 1 6.4687 1.2758 2.5887 30 1 7.5580 0.8500 1.2469 31 1 9.5654 4.8077 2.8028 32 1 7.7631 1.0089 -1.2044 33 1 7.3113 0.6035 -3.5819 34 1 5.0008 0.5178 -4.4182 35 1 3.1185 0.8342 -2.8922 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381464625.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:06 Heat of formation + Delta-G solvation = 39.446524 kcal Electronic energy + Delta-G solvation = -16960.564343 eV Core-core repulsion = 14343.906483 eV Total energy + Delta-G solvation = -2616.657860 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.10076 -37.89942 -37.04962 -35.25683 -33.48646 -31.35799 -30.10294 -29.47477 -27.04208 -24.73801 -23.94320 -23.24031 -21.96741 -20.32212 -19.24104 -17.83252 -17.35415 -16.58263 -16.29113 -15.99732 -15.65668 -15.21162 -14.93675 -14.80484 -14.50998 -14.39491 -13.87944 -13.60532 -13.26571 -12.96068 -12.73806 -12.60191 -12.49591 -12.40706 -12.16969 -11.88677 -11.67539 -11.52728 -10.93728 -10.34678 -9.28766 -8.94801 -8.44419 -8.32739 -6.54557 0.34742 0.87976 1.30954 1.32099 1.42288 1.83056 2.22326 2.24167 2.88774 3.12446 3.61606 3.90910 3.95744 4.11795 4.28911 4.38845 4.43488 4.53735 4.58177 4.62578 4.76018 4.77537 4.81850 5.00860 5.03999 5.10244 5.10729 5.23292 5.36438 5.70723 5.81761 5.97552 6.01467 6.12321 6.18631 6.47545 6.51047 6.55968 6.63490 7.11146 8.73007 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022249 B = 0.006824 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.190265 B = 4101.950888 C = 4956.167081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.700 5.700 3 C 0.150 3.850 4 C -0.193 4.193 5 C 0.053 3.947 6 N -0.470 5.470 7 C 0.219 3.781 8 C -0.552 4.552 9 H 0.024 0.976 10 C 0.020 3.980 11 N -0.938 5.938 12 Si 0.951 3.049 13 H -0.263 1.263 14 H -0.276 1.276 15 H -0.240 1.240 16 C 0.070 3.930 17 C -0.148 4.148 18 C -0.108 4.108 19 C -0.154 4.154 20 C -0.074 4.074 21 C -0.114 4.114 22 H 0.026 0.974 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.343 0.657 26 H 0.042 0.958 27 H 0.076 0.924 28 H 0.176 0.824 29 H 0.059 0.941 30 H 0.040 0.960 31 H 0.273 0.727 32 H 0.104 0.896 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.780 -10.731 -4.719 16.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.331 5.331 3 C 0.021 3.979 4 C -0.200 4.200 5 C -0.075 4.075 6 N -0.149 5.149 7 C 0.098 3.902 8 C -0.590 4.590 9 H 0.043 0.957 10 C -0.179 4.179 11 N -0.576 5.576 12 Si 0.772 3.228 13 H -0.188 1.188 14 H -0.201 1.201 15 H -0.163 1.163 16 C -0.037 4.037 17 C -0.168 4.168 18 C -0.127 4.127 19 C -0.173 4.173 20 C -0.092 4.092 21 C -0.119 4.119 22 H 0.044 0.956 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.160 0.840 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.194 0.806 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.123 0.877 33 H 0.163 0.837 34 H 0.168 0.832 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.347 -10.637 -5.079 16.361 hybrid contribution 0.803 0.600 1.611 1.897 sum -10.544 -10.037 -3.469 14.965 Atomic orbital electron populations 1.22233 0.86709 1.02482 1.00630 1.60417 1.08343 1.13831 1.50536 1.20016 0.87308 0.89826 1.00761 1.20200 0.95057 1.13865 0.90927 1.22023 0.82126 1.03094 1.00297 1.44265 1.06639 1.57692 1.06258 1.19741 0.84150 0.96032 0.90233 1.21361 1.15397 0.94787 1.27454 0.95718 1.25857 0.96765 0.97623 0.97676 1.70040 1.26234 1.19716 1.41653 0.85676 0.79650 0.79039 0.78421 1.18766 1.20071 1.16312 1.18722 0.96488 1.04133 0.84341 1.20294 0.96587 1.06048 0.93913 1.21053 0.98250 0.99984 0.93399 1.20899 0.91747 1.03988 1.00652 1.20439 0.99915 0.98364 0.90499 1.19335 0.91224 1.06576 0.94764 0.95580 0.91610 0.90511 0.83994 0.93943 0.90602 0.80644 0.92271 0.94165 0.91799 0.87741 0.83731 0.83201 0.84692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.70 127.69 1.37 1.87 16 2 N -0.70 -16.45 6.84 -541.22 -3.70 -20.15 16 3 C 0.15 3.98 6.21 85.56 0.53 4.51 16 4 C -0.19 -6.69 5.83 -18.63 -0.11 -6.80 16 5 C 0.05 2.00 11.19 83.00 0.93 2.93 16 6 N -0.47 -20.81 2.76 -520.01 -1.44 -22.24 16 7 C 0.22 10.32 4.82 85.63 0.41 10.73 16 8 C -0.55 -31.64 9.94 25.60 0.25 -31.39 16 9 H 0.02 1.64 8.06 -2.91 -0.02 1.62 16 10 C 0.02 1.15 5.47 84.66 0.46 1.62 16 11 N -0.94 -57.40 13.96 21.45 0.30 -57.10 16 12 Si 0.95 41.30 27.47 68.60 1.88 43.19 16 13 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 14 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 15 H -0.24 -9.38 6.54 99.48 0.65 -8.73 16 16 C 0.07 3.05 6.81 39.03 0.27 3.31 16 17 C -0.15 -5.97 10.00 22.37 0.22 -5.75 16 18 C -0.11 -3.49 10.01 22.29 0.22 -3.26 16 19 C -0.15 -4.50 9.97 22.03 0.22 -4.28 16 20 C -0.07 -2.38 10.05 22.23 0.22 -2.15 16 21 C -0.11 -4.36 6.35 -20.20 -0.13 -4.49 16 22 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 23 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 25 H 0.34 7.81 8.81 -89.70 -0.79 7.02 16 26 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.18 5.63 8.06 -2.91 -0.02 5.61 16 29 H 0.06 2.57 7.17 -2.39 -0.02 2.55 16 30 H 0.04 1.84 7.57 -2.39 -0.02 1.83 16 31 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 32 H 0.10 4.34 8.06 -2.91 -0.02 4.32 16 33 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 34 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 35 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -68.00 300.06 2.15 -65.85 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: 0.23 Total: 23.61 kcal Atomic # 6 Polarization: -38.03 SS G_CDS: 4.88 Total: -33.15 kcal Atomic # 7 Polarization: -94.66 SS G_CDS: -4.84 Total: -99.50 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 1.88 Total: 43.19 kcal Total: -68.00 2.15 -65.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381464625.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.298 kcal (2) G-P(sol) polarization free energy of solvation -68.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds