Wall clock time and date at job start Mon Mar 30 2020 06:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46686 * 2 1 4 4 C 1.52992 * 109.47028 * 239.99892 * 2 1 3 5 5 C 1.52997 * 109.47224 * 175.00093 * 4 2 1 6 6 C 1.47201 * 109.47580 * 179.97438 * 5 4 2 7 7 N 4.86665 * 126.63702 * 241.84137 * 2 1 3 8 8 N 1.46497 * 109.46870 * 119.99619 * 2 1 3 9 9 C 1.38855 * 120.00227 * 274.99829 * 8 2 1 10 10 C 1.39574 * 119.84117 * 0.23014 * 9 8 2 11 11 C 1.36340 * 120.15931 * 180.23471 * 10 9 8 12 12 C 1.40882 * 119.83821 * 359.51638 * 11 10 9 13 13 C 1.41135 * 120.15621 * 180.27304 * 12 11 10 14 14 H 1.08004 * 119.99804 * 154.52858 * 13 12 11 15 15 C 1.39864 * 120.00035 * 334.53538 * 13 12 11 16 16 N 1.30904 * 120.00281 * 343.05418 * 15 13 12 17 17 Si 1.86802 * 119.99788 * 163.05533 * 15 13 12 18 18 H 1.48498 * 109.47168 * 90.00015 * 17 15 13 19 19 H 1.48508 * 109.46901 * 210.00160 * 17 15 13 20 20 H 1.48503 * 109.46977 * 329.99686 * 17 15 13 21 21 C 1.40893 * 119.68976 * 0.25476 * 12 11 10 22 22 C 1.36339 * 119.83242 * 0.02562 * 21 12 11 23 23 H 1.08999 * 109.46841 * 60.00067 * 1 2 3 24 24 H 1.08992 * 109.47071 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46713 * 300.00253 * 1 2 3 26 26 H 1.09004 * 109.47115 * 294.99862 * 4 2 1 27 27 H 1.09002 * 109.47396 * 54.99660 * 4 2 1 28 28 H 1.08996 * 109.47196 * 299.99970 * 5 4 2 29 29 H 1.09002 * 109.47288 * 59.99500 * 5 4 2 30 30 H 0.96998 * 120.00131 * 95.00560 * 8 2 1 31 31 H 1.07998 * 119.92111 * 0.02562 * 10 9 8 32 32 H 1.08004 * 120.08036 * 179.79224 * 11 10 9 33 33 H 0.96996 * 119.99982 * 179.97438 * 16 15 13 34 34 H 1.07994 * 120.07931 * 180.02562 * 21 12 11 35 35 H 1.08001 * 119.91931 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 6 4.0556 -1.3078 -2.5152 7 7 4.4342 -1.8429 -3.4430 8 7 2.0183 -0.6905 1.1962 9 6 2.1510 0.0022 2.3923 10 6 1.8136 1.3552 2.4523 11 6 1.9458 2.0429 3.6222 12 6 2.4146 1.3820 4.7746 13 6 2.5486 2.0859 5.9906 14 1 2.5005 1.5551 6.9299 15 6 2.7436 3.4708 5.9790 16 7 3.1303 4.0683 4.8803 17 14 2.4522 4.4680 7.5315 18 1 3.7125 4.5470 8.3129 19 1 2.0105 5.8376 7.1645 20 1 1.4018 3.8122 8.3511 21 6 2.7488 0.0149 4.7078 22 6 2.6170 -0.6587 3.5298 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.7517 -1.7715 -1.2055 27 1 1.6054 -0.2618 -2.1369 28 1 3.8532 0.4369 -1.3573 29 1 3.9995 -1.0728 -0.4259 30 1 2.2491 -1.6317 1.1527 31 1 1.4501 1.8595 1.5692 32 1 1.6875 3.0907 3.6664 33 1 3.2652 5.0288 4.8723 34 1 3.1084 -0.4981 5.5875 35 1 2.8731 -1.7066 3.4768 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390256474.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:23 Heat of formation + Delta-G solvation = 34.265520 kcal Electronic energy + Delta-G solvation = -16519.938438 eV Core-core repulsion = 13903.055913 eV Total energy + Delta-G solvation = -2616.882526 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.49564 -37.12886 -36.01372 -33.68005 -32.04572 -30.16390 -29.41486 -28.03259 -24.96910 -24.05331 -21.78108 -20.69853 -19.52188 -17.49774 -17.21741 -16.50532 -15.58789 -14.92914 -14.74944 -14.25381 -13.83335 -13.43056 -13.19441 -12.82260 -12.59906 -12.50840 -12.44159 -11.97769 -11.86020 -11.65568 -11.47361 -11.16089 -11.03804 -10.96254 -10.77919 -10.64722 -10.45543 -9.71598 -9.28691 -9.22978 -8.57400 -7.50265 -6.64297 -6.40029 -4.04711 2.66137 2.70100 2.91006 3.09078 3.14491 3.19137 3.34296 3.88387 4.05123 4.22586 4.75230 4.84967 4.95819 5.05249 5.46766 5.50514 5.66928 5.75730 5.83392 5.91886 5.93894 6.17215 6.25665 6.34540 6.48485 6.92531 6.93543 7.19312 7.34993 7.46662 7.54717 7.68036 7.83106 8.14491 8.27975 8.48322 8.68339 8.78953 9.05652 9.14257 10.37041 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.036757 B = 0.004448 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.567776 B = 6293.357032 C = 6343.066246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.159 3.841 3 H 0.079 0.921 4 C -0.120 4.120 5 C -0.028 4.028 6 C 0.212 3.788 7 N -0.452 5.452 8 N -0.757 5.757 9 C 0.093 3.907 10 C -0.164 4.164 11 C -0.124 4.124 12 C 0.075 3.925 13 C -0.468 4.468 14 H 0.071 0.929 15 C 0.075 3.925 16 N -0.809 5.809 17 Si 0.901 3.099 18 H -0.273 1.273 19 H -0.278 1.278 20 H -0.263 1.263 21 C -0.187 4.187 22 C -0.159 4.159 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.383 0.617 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.276 0.724 34 H 0.090 0.910 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.025 -3.963 -7.559 9.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.052 3.948 3 H 0.097 0.903 4 C -0.159 4.159 5 C -0.068 4.068 6 C -0.105 4.105 7 N -0.129 5.129 8 N -0.392 5.392 9 C -0.003 4.003 10 C -0.186 4.186 11 C -0.144 4.144 12 C 0.072 3.928 13 C -0.499 4.499 14 H 0.090 0.910 15 C -0.140 4.140 16 N -0.436 5.436 17 Si 0.726 3.274 18 H -0.198 1.198 19 H -0.204 1.204 20 H -0.187 1.187 21 C -0.207 4.207 22 C -0.181 4.181 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.216 0.784 31 H 0.108 0.892 32 H 0.135 0.865 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.440 -4.365 -9.123 10.403 hybrid contribution -0.097 0.412 1.074 1.154 sum -2.537 -3.952 -8.049 9.319 Atomic orbital electron populations 1.22302 0.96764 1.01735 1.01886 1.20586 0.93112 0.96951 0.84109 0.90328 1.21838 0.92598 1.02271 0.99215 1.19388 0.96843 1.00807 0.89800 1.29458 0.93079 0.93395 0.94593 1.81205 1.09403 1.10281 1.12011 1.43979 1.77208 1.11002 1.07052 1.17302 1.05751 0.91742 0.85546 1.20124 1.07880 0.92572 0.98004 1.20940 1.01247 0.99862 0.92353 1.17492 0.90934 0.90968 0.93396 1.19366 1.44992 0.91874 0.93671 0.91042 1.25771 0.92595 0.98402 0.97208 1.69840 1.34228 1.11217 1.28339 0.86436 0.79514 0.78976 0.82440 1.19802 1.20352 1.18743 1.20554 1.08092 0.96046 0.96036 1.19807 1.07748 0.97482 0.93075 0.92865 0.92977 0.91691 0.90992 0.90300 0.87124 0.86812 0.78410 0.89181 0.86487 0.91360 0.89184 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 9.40 37.16 0.35 -1.58 16 2 C 0.16 1.84 2.26 -67.93 -0.15 1.69 16 3 H 0.08 0.99 6.46 -51.93 -0.34 0.66 16 4 C -0.12 -1.02 4.71 -26.74 -0.13 -1.15 16 5 C -0.03 -0.24 5.59 -29.52 -0.16 -0.41 16 6 C 0.21 2.33 15.43 -20.76 -0.32 2.01 16 7 N -0.45 -6.28 18.54 42.15 0.78 -5.50 16 8 N -0.76 -10.80 4.67 -52.03 -0.24 -11.04 16 9 C 0.09 1.81 6.65 -83.69 -0.56 1.26 16 10 C -0.16 -3.51 8.73 -39.77 -0.35 -3.85 16 11 C -0.12 -3.09 8.63 -39.27 -0.34 -3.43 16 12 C 0.08 1.95 5.57 -106.79 -0.59 1.36 16 13 C -0.47 -12.42 9.03 -37.87 -0.34 -12.77 16 14 H 0.07 1.84 7.90 -52.48 -0.41 1.43 16 15 C 0.08 1.90 5.15 -17.34 -0.09 1.81 16 16 N -0.81 -20.91 10.96 55.54 0.61 -20.30 16 17 Si 0.90 18.86 29.59 -169.99 -5.03 13.83 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 21 C -0.19 -4.44 9.74 -39.26 -0.38 -4.82 16 22 C -0.16 -3.32 9.82 -39.77 -0.39 -3.71 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.91 7.64 -51.93 -0.40 0.51 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.11 0.99 7.75 -51.93 -0.40 0.59 16 30 H 0.38 4.82 8.60 -40.82 -0.35 4.47 16 31 H 0.09 1.72 6.03 -52.49 -0.32 1.40 16 32 H 0.12 3.06 6.19 -52.48 -0.32 2.73 16 33 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 34 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 35 H 0.09 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 301.46 15.07 4.54 4.54 Total: -1.00 -28.51 301.46 -7.43 -35.94 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -4.63 Total: 6.12 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -3.46 Total: -23.60 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 1.15 Total: -36.84 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.51 -7.43 -35.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390256474.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.210 kcal (2) G-P(sol) polarization free energy of solvation -28.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds