Wall clock time and date at job start Mon Mar 30 2020 06:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46686 * 2 1 4 4 C 1.52992 * 109.47028 * 239.99892 * 2 1 3 5 5 C 1.52997 * 109.47224 * 175.00093 * 4 2 1 6 6 C 1.47201 * 109.47580 * 179.97438 * 5 4 2 7 7 N 4.86665 * 126.63702 * 241.84137 * 2 1 3 8 8 N 1.46497 * 109.46870 * 119.99619 * 2 1 3 9 9 C 1.38855 * 120.00227 * 274.99829 * 8 2 1 10 10 C 1.39574 * 119.84117 * 0.23014 * 9 8 2 11 11 C 1.36340 * 120.15931 * 180.23471 * 10 9 8 12 12 C 1.40882 * 119.83821 * 359.51638 * 11 10 9 13 13 C 1.41135 * 120.15621 * 180.27304 * 12 11 10 14 14 H 1.08004 * 119.99804 * 154.52858 * 13 12 11 15 15 C 1.39864 * 120.00035 * 334.53538 * 13 12 11 16 16 N 1.30904 * 120.00281 * 343.05418 * 15 13 12 17 17 Si 1.86802 * 119.99788 * 163.05533 * 15 13 12 18 18 H 1.48498 * 109.47168 * 90.00015 * 17 15 13 19 19 H 1.48508 * 109.46901 * 210.00160 * 17 15 13 20 20 H 1.48503 * 109.46977 * 329.99686 * 17 15 13 21 21 C 1.40893 * 119.68976 * 0.25476 * 12 11 10 22 22 C 1.36339 * 119.83242 * 0.02562 * 21 12 11 23 23 H 1.08999 * 109.46841 * 60.00067 * 1 2 3 24 24 H 1.08992 * 109.47071 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46713 * 300.00253 * 1 2 3 26 26 H 1.09004 * 109.47115 * 294.99862 * 4 2 1 27 27 H 1.09002 * 109.47396 * 54.99660 * 4 2 1 28 28 H 1.08996 * 109.47196 * 299.99970 * 5 4 2 29 29 H 1.09002 * 109.47288 * 59.99500 * 5 4 2 30 30 H 0.96998 * 120.00131 * 95.00560 * 8 2 1 31 31 H 1.07998 * 119.92111 * 0.02562 * 10 9 8 32 32 H 1.08004 * 120.08036 * 179.79224 * 11 10 9 33 33 H 0.96996 * 119.99982 * 179.97438 * 16 15 13 34 34 H 1.07994 * 120.07931 * 180.02562 * 21 12 11 35 35 H 1.08001 * 119.91931 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 6 4.0556 -1.3078 -2.5152 7 7 4.4342 -1.8429 -3.4430 8 7 2.0183 -0.6905 1.1962 9 6 2.1510 0.0022 2.3923 10 6 1.8136 1.3552 2.4523 11 6 1.9458 2.0429 3.6222 12 6 2.4146 1.3820 4.7746 13 6 2.5486 2.0859 5.9906 14 1 2.5005 1.5551 6.9299 15 6 2.7436 3.4708 5.9790 16 7 3.1303 4.0683 4.8803 17 14 2.4522 4.4680 7.5315 18 1 3.7125 4.5470 8.3129 19 1 2.0105 5.8376 7.1645 20 1 1.4018 3.8122 8.3511 21 6 2.7488 0.0149 4.7078 22 6 2.6170 -0.6587 3.5298 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.7517 -1.7715 -1.2055 27 1 1.6054 -0.2618 -2.1369 28 1 3.8532 0.4369 -1.3573 29 1 3.9995 -1.0728 -0.4259 30 1 2.2491 -1.6317 1.1527 31 1 1.4501 1.8595 1.5692 32 1 1.6875 3.0907 3.6664 33 1 3.2652 5.0288 4.8723 34 1 3.1084 -0.4981 5.5875 35 1 2.8731 -1.7066 3.4768 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390256474.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:21 Heat of formation + Delta-G solvation = 18.968215 kcal Electronic energy + Delta-G solvation = -16520.601779 eV Core-core repulsion = 13903.055913 eV Total energy + Delta-G solvation = -2617.545866 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.92577 -38.28723 -37.20839 -35.31929 -33.35208 -31.43337 -31.05029 -29.60914 -26.32122 -25.28275 -23.27047 -22.31060 -20.84342 -19.07398 -18.32318 -17.90216 -16.88634 -16.49702 -15.78866 -15.59340 -15.14310 -14.67882 -14.48914 -14.23105 -13.93125 -13.73508 -13.57885 -13.43093 -13.28216 -13.06457 -12.70157 -12.66760 -12.37730 -12.27544 -12.00614 -11.80535 -11.59779 -11.49413 -11.05120 -10.94159 -10.20461 -9.28547 -8.47739 -8.03161 -5.92930 1.19134 1.28951 1.43013 1.54713 1.64703 1.80685 1.84861 2.31411 2.92430 3.03218 3.07027 3.94065 4.08342 4.17870 4.28705 4.53073 4.62107 4.70152 4.75361 4.81972 5.00193 5.05363 5.14035 5.20477 5.29163 5.32933 5.39078 5.53939 5.56437 5.81571 5.92143 6.08076 6.27864 6.50390 6.63326 6.77425 6.99513 7.16752 7.27758 7.47056 8.54631 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.036757 B = 0.004448 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.567776 B = 6293.357032 C = 6343.066246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.156 3.844 3 H 0.072 0.928 4 C -0.108 4.108 5 C -0.024 4.024 6 C 0.240 3.760 7 N -0.506 5.506 8 N -0.743 5.743 9 C 0.127 3.873 10 C -0.172 4.172 11 C -0.143 4.143 12 C 0.032 3.968 13 C -0.509 4.509 14 H 0.062 0.938 15 C 0.034 3.966 16 N -0.842 5.842 17 Si 0.971 3.029 18 H -0.267 1.267 19 H -0.269 1.269 20 H -0.264 1.264 21 C -0.197 4.197 22 C -0.169 4.169 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.035 0.965 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.125 0.875 29 H 0.118 0.882 30 H 0.397 0.603 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.280 0.720 34 H 0.090 0.910 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.494 -4.785 -8.964 10.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.050 3.950 3 H 0.090 0.910 4 C -0.147 4.147 5 C -0.064 4.064 6 C -0.076 4.076 7 N -0.184 5.184 8 N -0.378 5.378 9 C 0.027 3.973 10 C -0.194 4.194 11 C -0.163 4.163 12 C 0.029 3.971 13 C -0.541 4.541 14 H 0.081 0.919 15 C -0.178 4.178 16 N -0.471 5.471 17 Si 0.793 3.207 18 H -0.192 1.192 19 H -0.193 1.193 20 H -0.188 1.188 21 C -0.217 4.217 22 C -0.191 4.191 23 H 0.095 0.905 24 H 0.078 0.922 25 H 0.055 0.945 26 H 0.101 0.899 27 H 0.116 0.884 28 H 0.143 0.857 29 H 0.135 0.865 30 H 0.232 0.768 31 H 0.130 0.870 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.916 -5.224 -10.571 12.147 hybrid contribution 0.010 0.510 1.333 1.427 sum -2.905 -4.714 -9.238 10.771 Atomic orbital electron populations 1.22257 0.96317 1.02175 1.01686 1.20766 0.93349 0.96838 0.84019 0.90979 1.21731 0.92283 1.02681 0.98041 1.19509 0.96867 1.01330 0.88670 1.29762 0.91662 0.92085 0.94105 1.81246 1.11171 1.12154 1.13806 1.44050 1.75973 1.11618 1.06145 1.17347 1.01944 0.91076 0.86959 1.20294 1.07942 0.93555 0.97600 1.20869 1.02541 0.99247 0.93612 1.17786 0.93053 0.92320 0.93966 1.19576 1.47568 0.93215 0.93753 0.91930 1.26501 0.91954 0.98926 1.00391 1.69900 1.35376 1.11623 1.30175 0.85387 0.79346 0.77520 0.78477 1.19191 1.19343 1.18798 1.20741 1.08037 0.95534 0.97405 1.20104 1.07591 0.98990 0.92431 0.90520 0.92222 0.94532 0.89922 0.88370 0.85741 0.86453 0.76761 0.86998 0.88682 0.90926 0.89216 0.86489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.24 9.40 71.98 0.68 -2.57 16 2 C 0.16 3.00 2.26 44.99 0.10 3.11 16 3 H 0.07 1.56 6.46 -2.39 -0.02 1.54 16 4 C -0.11 -1.35 4.71 30.59 0.14 -1.21 16 5 C -0.02 -0.31 5.59 28.79 0.16 -0.15 16 6 C 0.24 4.59 15.43 89.44 1.38 5.97 16 7 N -0.51 -13.16 18.54 20.01 0.37 -12.79 16 8 N -0.74 -18.44 4.67 -318.54 -1.49 -19.93 16 9 C 0.13 4.63 6.65 38.67 0.26 4.89 16 10 C -0.17 -7.22 8.73 22.15 0.19 -7.02 16 11 C -0.14 -7.30 8.63 22.47 0.19 -7.11 16 12 C 0.03 1.70 5.57 -21.27 -0.12 1.58 16 13 C -0.51 -28.34 9.03 23.38 0.21 -28.13 16 14 H 0.06 3.41 7.90 -2.91 -0.02 3.39 16 15 C 0.03 1.76 5.15 85.22 0.44 2.20 16 16 N -0.84 -45.10 10.96 21.82 0.24 -44.86 16 17 Si 0.97 39.80 29.59 68.60 2.03 41.83 16 18 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 19 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 20 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 21 C -0.20 -9.46 9.74 22.48 0.22 -9.24 16 22 C -0.17 -6.75 9.82 22.15 0.22 -6.54 16 23 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.04 0.93 7.64 -2.39 -0.02 0.91 16 26 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.12 1.56 7.75 -2.39 -0.02 1.54 16 30 H 0.40 8.17 8.60 -92.71 -0.80 7.37 16 31 H 0.11 4.12 6.03 -2.91 -0.02 4.10 16 32 H 0.10 5.21 6.19 -2.91 -0.02 5.19 16 33 H 0.28 13.70 8.30 -92.71 -0.77 12.93 16 34 H 0.09 4.16 8.06 -2.91 -0.02 4.14 16 35 H 0.12 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -64.66 301.46 5.53 -59.13 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.30 Total: 20.83 kcal Atomic # 6 Polarization: -48.29 SS G_CDS: 4.08 Total: -44.21 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -0.88 Total: -77.58 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -64.66 5.53 -59.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390256474.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.097 kcal (2) G-P(sol) polarization free energy of solvation -64.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds