Wall clock time and date at job start Mon Mar 30 2020 05:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38292 * 119.92114 * 2 1 4 4 C 1.38103 * 120.06781 * 179.97438 * 3 2 1 5 5 C 1.38907 * 119.93251 * 359.97438 * 4 3 2 6 6 N 1.39668 * 120.07688 * 179.97438 * 5 4 3 7 7 C 1.46506 * 120.00181 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47289 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47196 * 304.99846 * 8 7 6 10 10 C 1.47197 * 109.47262 * 64.99711 * 8 7 6 11 11 N 7.41118 * 162.42983 * 85.06808 * 2 1 3 12 12 C 1.53001 * 109.46997 * 185.00271 * 8 7 6 13 13 C 1.50699 * 109.47020 * 174.99825 * 12 8 7 14 14 H 1.08001 * 120.00436 * 0.02562 * 13 12 8 15 15 C 1.37879 * 119.99910 * 179.97438 * 13 12 8 16 16 N 1.31513 * 120.00056 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00090 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.46816 * 89.99688 * 17 15 13 19 19 H 1.48493 * 109.47344 * 209.99601 * 17 15 13 20 20 H 1.48497 * 109.47130 * 330.00378 * 17 15 13 21 21 C 1.38907 * 119.84667 * 0.25939 * 5 4 3 22 22 C 1.38108 * 119.92754 * 359.48722 * 21 5 4 23 23 H 1.09002 * 109.47337 * 90.00073 * 1 2 3 24 24 H 1.09008 * 109.46891 * 209.99816 * 1 2 3 25 25 H 1.08997 * 109.47234 * 329.99324 * 1 2 3 26 26 H 1.07994 * 119.96192 * 359.96037 * 3 2 1 27 27 H 1.08008 * 120.03316 * 180.02562 * 4 3 2 28 28 H 0.97001 * 120.00568 * 0.02562 * 6 5 4 29 29 H 1.09001 * 109.47060 * 300.00571 * 7 6 5 30 30 H 1.09004 * 109.47073 * 60.00060 * 7 6 5 31 31 H 1.09003 * 109.46763 * 294.99837 * 12 8 7 32 32 H 1.08998 * 109.47451 * 54.99936 * 12 8 7 33 33 H 0.96997 * 120.00137 * 180.02562 * 16 15 13 34 34 H 1.08004 * 120.03686 * 179.72396 * 21 5 4 35 35 H 1.07998 * 119.96672 * 180.25929 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1986 0.0000 4 6 3.5778 1.2021 0.0005 5 6 4.2740 0.0001 0.0016 6 7 5.6707 0.0002 0.0016 7 6 6.4033 -1.2685 0.0022 8 6 7.9075 -0.9889 0.0027 9 1 8.1573 -0.3432 -0.8392 10 6 8.2822 -0.3223 1.2604 11 7 8.5724 0.1923 2.2290 12 6 8.6716 -2.3085 -0.1225 13 6 10.1466 -2.0252 -0.2455 14 1 10.5035 -1.0059 -0.2351 15 6 11.0407 -3.0674 -0.3705 16 7 12.3279 -2.8202 -0.4774 17 14 10.4236 -4.8304 -0.3879 18 1 10.1332 -5.2393 -1.7857 19 1 11.4626 -5.7242 0.1836 20 1 9.1843 -4.9292 0.4242 21 6 3.5779 -1.2019 -0.0033 22 6 2.1969 -1.1984 0.0015 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.6549 2.1327 -0.0006 27 1 4.1160 2.1386 0.0010 28 1 6.1557 0.8402 0.0012 29 1 6.1399 -1.8398 0.8924 30 1 6.1400 -1.8405 -0.8876 31 1 8.4913 -2.9181 0.7630 32 1 8.3294 -2.8440 -1.0081 33 1 12.9569 -3.5533 -0.5656 34 1 4.1161 -2.1383 -0.0070 35 1 1.6550 -2.1327 0.0019 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390482381.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:55 Heat of formation + Delta-G solvation = 34.947483 kcal Electronic energy + Delta-G solvation = -16198.358213 eV Core-core repulsion = 13581.505260 eV Total energy + Delta-G solvation = -2616.852953 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.52505 -37.42262 -35.37397 -33.81289 -32.29305 -30.88591 -30.74820 -27.65648 -25.46125 -23.92918 -22.20246 -21.62772 -20.75941 -17.55989 -17.01127 -16.83877 -15.85809 -15.21178 -14.56527 -14.22010 -13.95837 -13.85084 -13.66499 -13.34907 -13.28310 -12.96715 -12.54017 -12.35626 -12.19797 -11.99052 -11.56096 -11.42458 -11.34198 -11.01653 -10.80331 -10.52761 -10.11180 -9.90061 -9.80176 -9.42766 -8.88892 -8.68512 -7.26155 -6.17533 -4.19415 1.48096 1.63615 3.21416 3.30664 3.30843 3.38757 3.44873 3.57728 3.90464 4.32239 4.53954 4.85128 4.95056 5.08577 5.11959 5.16876 5.27468 5.44664 5.47820 5.54221 5.63232 5.76240 5.81098 5.89201 6.06334 6.07678 6.13678 6.38184 6.45382 6.72580 6.80740 6.91010 7.00165 7.38929 7.54898 7.76935 8.23119 8.33515 8.84567 9.41568 10.95388 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.036362 B = 0.004376 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.859413 B = 6397.074470 C = 6944.132285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.157 4.157 3 C -0.073 4.073 4 C -0.196 4.196 5 C 0.219 3.781 6 N -0.747 5.747 7 C 0.129 3.871 8 C 0.007 3.993 9 H 0.113 0.887 10 C 0.235 3.765 11 N -0.458 5.458 12 C -0.002 4.002 13 C -0.532 4.532 14 H 0.074 0.926 15 C 0.072 3.928 16 N -0.895 5.895 17 Si 0.878 3.122 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.263 1.263 21 C -0.196 4.196 22 C -0.072 4.072 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.399 0.601 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.028 0.972 32 H 0.037 0.963 33 H 0.266 0.734 34 H 0.123 0.877 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.081 3.242 -2.085 21.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.159 4.159 3 C -0.091 4.091 4 C -0.219 4.219 5 C 0.115 3.885 6 N -0.376 5.376 7 C 0.003 3.997 8 C -0.015 4.015 9 H 0.131 0.869 10 C -0.082 4.082 11 N -0.134 5.134 12 C -0.041 4.041 13 C -0.570 4.570 14 H 0.092 0.908 15 C -0.130 4.130 16 N -0.533 5.533 17 Si 0.704 3.296 18 H -0.199 1.199 19 H -0.212 1.212 20 H -0.188 1.188 21 C -0.218 4.218 22 C -0.090 4.090 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.134 0.866 27 H 0.135 0.865 28 H 0.234 0.766 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.141 0.859 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -20.352 3.736 -0.634 20.702 hybrid contribution 0.180 -0.844 -0.395 0.949 sum -20.172 2.892 -1.029 20.404 Atomic orbital electron populations 1.20629 0.91821 1.01998 1.01523 1.19611 0.95641 0.93166 1.07519 1.20698 0.93299 0.97215 0.97921 1.20573 0.94373 0.96236 1.10734 1.17845 0.83596 0.93869 0.93173 1.44859 1.02509 1.08425 1.81781 1.21542 0.89663 0.86082 1.02368 1.19209 0.93222 0.99971 0.89052 0.86902 1.28878 0.92280 0.92610 0.94450 1.80996 1.09334 1.10881 1.12215 1.19616 0.96412 0.90022 0.98085 1.20984 0.88680 0.95499 1.51806 0.90785 1.24988 0.94706 0.99219 0.94133 1.69897 1.01630 1.32486 1.49268 0.86811 0.79113 0.84781 0.78846 1.19908 1.21230 1.18801 1.20682 0.94314 0.96601 1.10224 1.20753 0.93432 0.97230 0.97609 0.92074 0.92210 0.92273 0.86573 0.86451 0.76599 0.91663 0.90207 0.95416 0.94473 0.92447 0.85914 0.86478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.83 10.01 36.00 0.36 -0.47 16 2 C -0.16 -1.69 5.88 -104.59 -0.62 -2.30 16 3 C -0.07 -0.79 9.69 -39.61 -0.38 -1.17 16 4 C -0.20 -2.32 9.90 -39.38 -0.39 -2.71 16 5 C 0.22 2.79 6.65 -83.79 -0.56 2.23 16 6 N -0.75 -9.46 5.52 -58.63 -0.32 -9.78 16 7 C 0.13 1.71 4.28 -4.04 -0.02 1.69 16 8 C 0.01 0.12 2.26 -93.41 -0.21 -0.09 16 9 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 10 C 0.24 4.55 13.45 -20.81 -0.28 4.27 16 11 N -0.46 -9.85 18.53 42.09 0.78 -9.07 16 12 C 0.00 -0.05 3.49 -27.88 -0.10 -0.15 16 13 C -0.53 -13.92 9.15 -34.44 -0.32 -14.24 16 14 H 0.07 2.13 7.84 -52.49 -0.41 1.72 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -26.59 13.96 55.43 0.77 -25.82 16 17 Si 0.88 20.16 27.47 -169.99 -4.67 15.49 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 21 C -0.20 -2.39 9.31 -39.38 -0.37 -2.75 16 22 C -0.07 -0.80 9.69 -39.61 -0.38 -1.18 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.44 8.08 -51.92 -0.42 0.02 16 25 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 26 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 27 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 28 H 0.40 4.83 8.23 -40.82 -0.34 4.49 16 29 H 0.07 0.88 7.96 -51.93 -0.41 0.46 16 30 H 0.08 0.94 7.94 -51.93 -0.41 0.53 16 31 H 0.03 0.58 7.20 -51.93 -0.37 0.20 16 32 H 0.04 0.70 7.57 -51.93 -0.39 0.31 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.12 1.39 6.73 -52.48 -0.35 1.04 16 35 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 303.85 15.07 4.58 4.58 Total: -1.00 -30.63 303.85 -7.03 -37.66 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -4.81 Total: 1.92 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -3.35 Total: -14.98 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 1.23 Total: -44.67 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.67 Total: 15.49 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.63 -7.03 -37.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390482381.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.610 kcal (2) G-P(sol) polarization free energy of solvation -30.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds