Wall clock time and date at job start Mon Mar 30 2020 05:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38292 * 119.92114 * 2 1 4 4 C 1.38103 * 120.06781 * 179.97438 * 3 2 1 5 5 C 1.38907 * 119.93251 * 359.97438 * 4 3 2 6 6 N 1.39668 * 120.07688 * 179.97438 * 5 4 3 7 7 C 1.46506 * 120.00181 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47289 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47196 * 304.99846 * 8 7 6 10 10 C 1.47197 * 109.47262 * 64.99711 * 8 7 6 11 11 N 7.41118 * 162.42983 * 85.06808 * 2 1 3 12 12 C 1.53001 * 109.46997 * 185.00271 * 8 7 6 13 13 C 1.50699 * 109.47020 * 174.99825 * 12 8 7 14 14 H 1.08001 * 120.00436 * 0.02562 * 13 12 8 15 15 C 1.37879 * 119.99910 * 179.97438 * 13 12 8 16 16 N 1.31513 * 120.00056 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00090 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.46816 * 89.99688 * 17 15 13 19 19 H 1.48493 * 109.47344 * 209.99601 * 17 15 13 20 20 H 1.48497 * 109.47130 * 330.00378 * 17 15 13 21 21 C 1.38907 * 119.84667 * 0.25939 * 5 4 3 22 22 C 1.38108 * 119.92754 * 359.48722 * 21 5 4 23 23 H 1.09002 * 109.47337 * 90.00073 * 1 2 3 24 24 H 1.09008 * 109.46891 * 209.99816 * 1 2 3 25 25 H 1.08997 * 109.47234 * 329.99324 * 1 2 3 26 26 H 1.07994 * 119.96192 * 359.96037 * 3 2 1 27 27 H 1.08008 * 120.03316 * 180.02562 * 4 3 2 28 28 H 0.97001 * 120.00568 * 0.02562 * 6 5 4 29 29 H 1.09001 * 109.47060 * 300.00571 * 7 6 5 30 30 H 1.09004 * 109.47073 * 60.00060 * 7 6 5 31 31 H 1.09003 * 109.46763 * 294.99837 * 12 8 7 32 32 H 1.08998 * 109.47451 * 54.99936 * 12 8 7 33 33 H 0.96997 * 120.00137 * 180.02562 * 16 15 13 34 34 H 1.08004 * 120.03686 * 179.72396 * 21 5 4 35 35 H 1.07998 * 119.96672 * 180.25929 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1986 0.0000 4 6 3.5778 1.2021 0.0005 5 6 4.2740 0.0001 0.0016 6 7 5.6707 0.0002 0.0016 7 6 6.4033 -1.2685 0.0022 8 6 7.9075 -0.9889 0.0027 9 1 8.1573 -0.3432 -0.8392 10 6 8.2822 -0.3223 1.2604 11 7 8.5724 0.1923 2.2290 12 6 8.6716 -2.3085 -0.1225 13 6 10.1466 -2.0252 -0.2455 14 1 10.5035 -1.0059 -0.2351 15 6 11.0407 -3.0674 -0.3705 16 7 12.3279 -2.8202 -0.4774 17 14 10.4236 -4.8304 -0.3879 18 1 10.1332 -5.2393 -1.7857 19 1 11.4626 -5.7242 0.1836 20 1 9.1843 -4.9292 0.4242 21 6 3.5779 -1.2019 -0.0033 22 6 2.1969 -1.1984 0.0015 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.6549 2.1327 -0.0006 27 1 4.1160 2.1386 0.0010 28 1 6.1557 0.8402 0.0012 29 1 6.1399 -1.8398 0.8924 30 1 6.1400 -1.8405 -0.8876 31 1 8.4913 -2.9181 0.7630 32 1 8.3294 -2.8440 -1.0081 33 1 12.9569 -3.5533 -0.5656 34 1 4.1161 -2.1383 -0.0070 35 1 1.6550 -2.1327 0.0019 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390482381.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:55 Heat of formation + Delta-G solvation = 16.986650 kcal Electronic energy + Delta-G solvation = -16199.137054 eV Core-core repulsion = 13581.505260 eV Total energy + Delta-G solvation = -2617.631794 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.40283 -38.74332 -36.60722 -35.45225 -33.91369 -31.90208 -31.65156 -29.09204 -26.50035 -25.01531 -23.48334 -23.01337 -21.64083 -18.98150 -18.69200 -18.00166 -16.95303 -16.31902 -15.94874 -15.41676 -15.24683 -14.90493 -14.63767 -14.51800 -14.30926 -14.21726 -14.05291 -13.92935 -13.33166 -13.11712 -12.84899 -12.71299 -12.50114 -12.21464 -12.15888 -11.73246 -11.69419 -11.61509 -11.35088 -10.74387 -10.68073 -9.73164 -8.25967 -8.15367 -6.32291 0.63577 0.78719 1.43426 1.46292 1.56129 1.87489 1.91114 2.40602 2.53808 3.05141 3.08528 3.15295 3.87331 4.07329 4.20196 4.25300 4.32390 4.52490 4.59238 4.67448 4.75981 4.80810 4.93458 4.97833 5.00676 5.18918 5.24712 5.30156 5.39890 5.52639 5.61302 5.63204 5.91968 6.07931 6.22628 6.49716 6.67884 6.76879 6.84690 7.32604 8.90847 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.036362 B = 0.004376 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.859413 B = 6397.074470 C = 6944.132285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.163 4.163 3 C -0.081 4.081 4 C -0.208 4.208 5 C 0.201 3.799 6 N -0.750 5.750 7 C 0.141 3.859 8 C 0.016 3.984 9 H 0.126 0.874 10 C 0.248 3.752 11 N -0.502 5.502 12 C -0.002 4.002 13 C -0.533 4.533 14 H 0.030 0.970 15 C 0.003 3.997 16 N -0.954 5.954 17 Si 0.948 3.052 18 H -0.256 1.256 19 H -0.297 1.297 20 H -0.235 1.235 21 C -0.208 4.208 22 C -0.081 4.081 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.135 0.865 27 H 0.123 0.877 28 H 0.400 0.600 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.031 0.969 32 H 0.068 0.932 33 H 0.265 0.735 34 H 0.130 0.870 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.146 1.946 -2.684 24.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.165 4.165 3 C -0.100 4.100 4 C -0.231 4.231 5 C 0.098 3.902 6 N -0.380 5.380 7 C 0.016 3.984 8 C -0.006 4.006 9 H 0.143 0.857 10 C -0.069 4.069 11 N -0.179 5.179 12 C -0.041 4.041 13 C -0.571 4.571 14 H 0.048 0.952 15 C -0.194 4.194 16 N -0.595 5.595 17 Si 0.771 3.229 18 H -0.181 1.181 19 H -0.223 1.223 20 H -0.158 1.158 21 C -0.230 4.230 22 C -0.099 4.099 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.152 0.848 27 H 0.141 0.859 28 H 0.234 0.766 29 H 0.085 0.915 30 H 0.121 0.879 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.148 0.852 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -23.465 2.458 -1.236 23.626 hybrid contribution 1.111 -0.322 -0.209 1.176 sum -22.354 2.136 -1.446 22.502 Atomic orbital electron populations 1.20671 0.89972 1.02894 1.02342 1.19999 0.97158 0.92987 1.06333 1.20999 0.93144 0.98315 0.97539 1.20784 0.95033 0.96404 1.10864 1.18008 0.83454 0.94507 0.94248 1.44759 1.02656 1.08129 1.82477 1.21403 0.86859 0.86583 1.03589 1.19252 0.95281 0.98111 0.87955 0.85680 1.29513 0.91025 0.91791 0.94563 1.80996 1.10850 1.12259 1.13807 1.19567 0.92908 0.92195 0.99397 1.21376 0.92058 0.93500 1.50185 0.95175 1.26044 0.94665 1.04660 0.93996 1.70084 1.03490 1.33979 1.51911 0.85693 0.79155 0.78026 0.80052 1.18073 1.22339 1.15810 1.20890 0.94978 0.96702 1.10449 1.21054 0.93307 0.98305 0.97245 0.91203 0.91351 0.91421 0.84763 0.85867 0.76578 0.91546 0.87866 0.95096 0.91382 0.92625 0.85199 0.84638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 10.01 71.24 0.71 -0.65 16 2 C -0.16 -3.10 5.88 -19.84 -0.12 -3.22 16 3 C -0.08 -1.61 9.69 22.25 0.22 -1.40 16 4 C -0.21 -4.63 9.90 22.40 0.22 -4.41 16 5 C 0.20 4.77 6.65 38.21 0.25 5.02 16 6 N -0.75 -17.68 5.52 -339.41 -1.87 -19.56 16 7 C 0.14 3.35 4.28 86.38 0.37 3.72 16 8 C 0.02 0.49 2.26 -12.60 -0.03 0.47 16 9 H 0.13 3.65 8.14 -2.39 -0.02 3.63 16 10 C 0.25 9.49 13.45 89.46 1.20 10.70 16 11 N -0.50 -21.79 18.53 19.99 0.37 -21.42 16 12 C 0.00 -0.06 3.49 29.85 0.10 0.04 16 13 C -0.53 -28.01 9.15 25.60 0.23 -27.78 16 14 H 0.03 1.79 7.84 -2.91 -0.02 1.77 16 15 C 0.00 0.17 5.47 84.66 0.46 0.64 16 16 N -0.95 -58.38 13.96 21.45 0.30 -58.08 16 17 Si 0.95 40.51 27.47 68.60 1.88 42.40 16 18 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 19 H -0.30 -13.12 7.11 99.48 0.71 -12.41 16 20 H -0.24 -8.90 6.54 99.48 0.65 -8.25 16 21 C -0.21 -4.60 9.31 22.40 0.21 -4.39 16 22 C -0.08 -1.60 9.69 22.25 0.22 -1.38 16 23 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 24 H 0.07 0.80 8.08 -2.38 -0.02 0.78 16 25 H 0.07 0.79 8.08 -2.39 -0.02 0.77 16 26 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 27 H 0.12 2.47 8.06 -2.91 -0.02 2.44 16 28 H 0.40 9.22 8.23 -92.71 -0.76 8.45 16 29 H 0.07 1.59 7.96 -2.39 -0.02 1.57 16 30 H 0.10 2.02 7.94 -2.38 -0.02 2.01 16 31 H 0.03 1.19 7.20 -2.39 -0.02 1.17 16 32 H 0.07 2.27 7.57 -2.39 -0.02 2.25 16 33 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.13 2.58 6.73 -2.91 -0.02 2.56 16 35 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -67.71 303.85 5.01 -62.71 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.27 Total: 16.59 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 4.06 Total: -22.63 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -1.20 Total: -99.06 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 1.88 Total: 42.40 kcal Total: -67.71 5.01 -62.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390482381.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.693 kcal (2) G-P(sol) polarization free energy of solvation -67.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds