Wall clock time and date at job start Mon Mar 30 2020 06:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47297 * 2 1 4 4 C 1.47202 * 109.47071 * 239.99696 * 2 1 3 5 5 N 2.60804 * 109.47203 * 239.99885 * 2 1 3 6 6 C 1.53003 * 109.47150 * 119.99924 * 2 1 3 7 7 N 1.46496 * 109.46857 * 299.99917 * 6 2 1 8 8 C 1.38858 * 119.99933 * 179.97438 * 7 6 2 9 9 C 1.39568 * 119.84017 * 359.72786 * 8 7 6 10 10 C 1.36345 * 120.16049 * 179.72222 * 9 8 7 11 11 C 1.40890 * 119.83590 * 0.54878 * 10 9 8 12 12 C 1.41133 * 120.15850 * 179.70531 * 11 10 9 13 13 H 1.07996 * 120.00189 * 204.63062 * 12 11 10 14 14 C 1.39867 * 119.99706 * 24.62108 * 12 11 10 15 15 N 1.30899 * 120.00270 * 17.96986 * 14 12 11 16 16 Si 1.86808 * 119.99673 * 197.96984 * 14 12 11 17 17 H 1.48492 * 109.47009 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.46924 * 120.00060 * 16 14 12 19 19 H 1.48501 * 109.46721 * 239.99811 * 16 14 12 20 20 C 1.40888 * 119.68622 * 359.72242 * 11 10 9 21 21 C 1.36338 * 119.83703 * 0.02562 * 20 11 10 22 22 H 1.09003 * 109.47363 * 300.00496 * 1 2 3 23 23 H 1.09002 * 109.47314 * 59.99822 * 1 2 3 24 24 H 1.09002 * 109.47548 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46901 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.46786 * 299.99651 * 3 2 1 27 27 H 1.09002 * 109.47022 * 59.99934 * 3 2 1 28 28 H 1.08997 * 109.46999 * 179.97438 * 6 2 1 29 29 H 1.09002 * 109.46923 * 59.99583 * 6 2 1 30 30 H 0.96996 * 120.00484 * 0.02562 * 7 6 2 31 31 H 1.07997 * 119.92406 * 359.97299 * 9 8 7 32 32 H 1.08000 * 120.08368 * 180.27732 * 10 9 8 33 33 H 0.97001 * 120.00134 * 179.97438 * 15 14 12 34 34 H 1.08003 * 120.07987 * 179.97438 * 20 11 10 35 35 H 1.08007 * 119.91918 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6940 -1.2019 5 7 2.3993 -1.2295 -2.1294 6 6 2.0400 -0.7212 1.2493 7 7 1.5516 -0.0306 2.4454 8 6 1.8866 -0.5052 3.7066 9 6 2.6841 -1.6439 3.8308 10 6 3.0217 -2.1124 5.0660 11 6 2.5538 -1.4508 6.2185 12 6 2.8940 -1.9334 7.5004 13 1 2.2602 -1.7123 8.3464 14 6 4.0518 -2.6984 7.6750 15 7 4.9923 -2.6795 6.7647 16 14 4.2561 -3.7470 9.2075 17 1 3.0607 -3.5939 10.0749 18 1 4.4052 -5.1717 8.8161 19 1 5.4653 -3.3084 9.9497 20 6 1.7446 -0.3052 6.0854 21 6 1.4192 0.1549 4.8439 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1299 -0.7216 1.2490 29 1 1.6765 -1.7489 1.2493 30 1 0.9937 0.7578 2.3564 31 1 3.0380 -2.1529 2.9465 32 1 3.6425 -2.9910 5.1606 33 1 5.7954 -3.2098 6.8860 34 1 1.3821 0.2067 6.9646 35 1 0.7986 1.0328 4.7403 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405217854.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:17 Heat of formation + Delta-G solvation = 39.490699 kcal Electronic energy + Delta-G solvation = -16577.959329 eV Core-core repulsion = 13961.303384 eV Total energy + Delta-G solvation = -2616.655945 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.93020 -37.52536 -35.64484 -33.95488 -32.31902 -29.49131 -28.70163 -27.57704 -26.31140 -24.29451 -22.25968 -21.07271 -19.80542 -17.43995 -17.22326 -15.87498 -15.17274 -14.98432 -14.96951 -14.04124 -13.78587 -13.54526 -13.51139 -12.95372 -12.64667 -12.60195 -12.31155 -12.19104 -12.03232 -11.71142 -11.65517 -11.41014 -11.09594 -11.03948 -10.87889 -10.77186 -10.47119 -9.70857 -9.30837 -9.25621 -8.57085 -7.51198 -6.66278 -6.42818 -4.05321 2.61205 2.65190 2.89258 3.08572 3.15304 3.20450 3.33220 3.61074 4.04819 4.39505 4.58997 4.63674 4.75586 4.76042 5.38403 5.52258 5.53253 5.62971 5.76062 5.86507 5.87943 5.95761 6.04485 6.24373 6.30381 6.87415 6.92227 7.18326 7.33834 7.41902 7.51182 7.67099 7.81563 8.14027 8.24925 8.44956 8.64710 8.77106 9.04829 9.13092 10.35760 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.041725 B = 0.004552 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.896118 B = 6150.137952 C = 6567.149190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.023 3.977 3 C -0.139 4.139 4 C 0.222 3.778 5 N -0.436 5.436 6 C 0.152 3.848 7 N -0.756 5.756 8 C 0.089 3.911 9 C -0.162 4.162 10 C -0.126 4.126 11 C 0.076 3.924 12 C -0.467 4.467 13 H 0.073 0.927 14 C 0.075 3.925 15 N -0.807 5.807 16 Si 0.901 3.099 17 H -0.262 1.262 18 H -0.274 1.274 19 H -0.277 1.277 20 C -0.188 4.188 21 C -0.155 4.155 22 H 0.080 0.920 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.385 0.615 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.276 0.724 34 H 0.091 0.909 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.994 5.347 -8.575 11.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.019 3.981 3 C -0.198 4.198 4 C -0.097 4.097 5 N -0.110 5.110 6 C 0.025 3.975 7 N -0.394 5.394 8 C -0.007 4.007 9 C -0.184 4.184 10 C -0.146 4.146 11 C 0.073 3.927 12 C -0.498 4.498 13 H 0.091 0.909 14 C -0.140 4.140 15 N -0.434 5.434 16 Si 0.727 3.273 17 H -0.186 1.186 18 H -0.200 1.200 19 H -0.203 1.203 20 C -0.208 4.208 21 C -0.177 4.177 22 H 0.099 0.901 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.220 0.780 31 H 0.105 0.895 32 H 0.136 0.864 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.075 4.290 -10.112 12.100 hybrid contribution -0.017 -0.046 0.976 0.978 sum -5.092 4.244 -9.136 11.288 Atomic orbital electron populations 1.21872 0.91115 1.03548 1.03211 1.18490 0.97211 0.95310 0.87083 1.21876 1.02291 0.92411 1.03204 1.28953 0.93120 0.93336 0.94242 1.81200 1.08922 1.09178 1.11729 1.20922 0.98513 0.95324 0.82727 1.43734 1.60606 1.33459 1.01624 1.17264 1.02490 0.97487 0.83469 1.20102 1.03264 0.97825 0.97192 1.20941 1.02086 1.00644 0.90894 1.17509 0.91519 0.90308 0.93364 1.19413 1.06628 1.28900 0.94835 0.90874 1.25796 0.94983 0.95660 0.97584 1.69859 1.05574 1.33566 1.34383 0.86377 0.78914 0.80050 0.82002 1.18603 1.19960 1.20270 1.20542 1.06768 0.98680 0.94823 1.19782 1.05075 1.00756 0.92095 0.90109 0.91859 0.91470 0.91433 0.91858 0.90101 0.92483 0.92543 0.78024 0.89457 0.86432 0.91345 0.89044 0.89521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.26 37.15 0.31 -0.85 16 2 C 0.02 0.23 0.70 -157.29 -0.11 0.12 16 3 C -0.14 -1.19 8.26 37.16 0.31 -0.88 16 4 C 0.22 2.71 13.86 -20.76 -0.29 2.42 16 5 N -0.44 -6.38 18.54 42.15 0.78 -5.59 16 6 C 0.15 2.00 3.74 -4.04 -0.02 1.98 16 7 N -0.76 -11.27 5.10 -58.50 -0.30 -11.56 16 8 C 0.09 1.80 6.67 -83.69 -0.56 1.24 16 9 C -0.16 -3.64 9.23 -39.77 -0.37 -4.01 16 10 C -0.13 -3.22 8.64 -39.26 -0.34 -3.56 16 11 C 0.08 2.00 5.57 -106.79 -0.60 1.41 16 12 C -0.47 -12.49 9.03 -37.87 -0.34 -12.83 16 13 H 0.07 1.89 7.91 -52.49 -0.41 1.48 16 14 C 0.07 1.91 5.13 -17.34 -0.09 1.83 16 15 N -0.81 -21.22 10.96 55.54 0.61 -20.61 16 16 Si 0.90 19.03 29.60 -169.99 -5.03 13.99 16 17 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 18 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 19 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 20 C -0.19 -4.48 9.74 -39.26 -0.38 -4.87 16 21 C -0.16 -3.26 9.82 -39.77 -0.39 -3.65 16 22 H 0.08 0.62 6.86 -51.93 -0.36 0.27 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.64 6.86 -51.93 -0.36 0.28 16 28 H 0.06 0.82 7.94 -51.93 -0.41 0.40 16 29 H 0.06 0.79 7.91 -51.93 -0.41 0.38 16 30 H 0.39 4.78 6.16 -40.82 -0.25 4.53 16 31 H 0.09 1.80 6.68 -52.49 -0.35 1.45 16 32 H 0.12 3.16 6.16 -52.49 -0.32 2.83 16 33 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 34 H 0.09 2.07 8.06 -52.48 -0.42 1.64 16 35 H 0.09 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 297.63 15.07 4.49 4.49 Total: -1.00 -28.69 297.63 -6.86 -35.56 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -4.55 Total: 5.37 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -2.86 Total: -21.63 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 1.09 Total: -37.77 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.69 -6.86 -35.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405217854.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.048 kcal (2) G-P(sol) polarization free energy of solvation -28.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds