Wall clock time and date at job start Mon Mar 30 2020 06:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47297 * 2 1 4 4 C 1.47202 * 109.47071 * 239.99696 * 2 1 3 5 5 N 2.60804 * 109.47203 * 239.99885 * 2 1 3 6 6 C 1.53003 * 109.47150 * 119.99924 * 2 1 3 7 7 N 1.46496 * 109.46857 * 299.99917 * 6 2 1 8 8 C 1.38858 * 119.99933 * 179.97438 * 7 6 2 9 9 C 1.39568 * 119.84017 * 359.72786 * 8 7 6 10 10 C 1.36345 * 120.16049 * 179.72222 * 9 8 7 11 11 C 1.40890 * 119.83590 * 0.54878 * 10 9 8 12 12 C 1.41133 * 120.15850 * 179.70531 * 11 10 9 13 13 H 1.07996 * 120.00189 * 204.63062 * 12 11 10 14 14 C 1.39867 * 119.99706 * 24.62108 * 12 11 10 15 15 N 1.30899 * 120.00270 * 17.96986 * 14 12 11 16 16 Si 1.86808 * 119.99673 * 197.96984 * 14 12 11 17 17 H 1.48492 * 109.47009 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.46924 * 120.00060 * 16 14 12 19 19 H 1.48501 * 109.46721 * 239.99811 * 16 14 12 20 20 C 1.40888 * 119.68622 * 359.72242 * 11 10 9 21 21 C 1.36338 * 119.83703 * 0.02562 * 20 11 10 22 22 H 1.09003 * 109.47363 * 300.00496 * 1 2 3 23 23 H 1.09002 * 109.47314 * 59.99822 * 1 2 3 24 24 H 1.09002 * 109.47548 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46901 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.46786 * 299.99651 * 3 2 1 27 27 H 1.09002 * 109.47022 * 59.99934 * 3 2 1 28 28 H 1.08997 * 109.46999 * 179.97438 * 6 2 1 29 29 H 1.09002 * 109.46923 * 59.99583 * 6 2 1 30 30 H 0.96996 * 120.00484 * 0.02562 * 7 6 2 31 31 H 1.07997 * 119.92406 * 359.97299 * 9 8 7 32 32 H 1.08000 * 120.08368 * 180.27732 * 10 9 8 33 33 H 0.97001 * 120.00134 * 179.97438 * 15 14 12 34 34 H 1.08003 * 120.07987 * 179.97438 * 20 11 10 35 35 H 1.08007 * 119.91918 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6940 -1.2019 5 7 2.3993 -1.2295 -2.1294 6 6 2.0400 -0.7212 1.2493 7 7 1.5516 -0.0306 2.4454 8 6 1.8866 -0.5052 3.7066 9 6 2.6841 -1.6439 3.8308 10 6 3.0217 -2.1124 5.0660 11 6 2.5538 -1.4508 6.2185 12 6 2.8940 -1.9334 7.5004 13 1 2.2602 -1.7123 8.3464 14 6 4.0518 -2.6984 7.6750 15 7 4.9923 -2.6795 6.7647 16 14 4.2561 -3.7470 9.2075 17 1 3.0607 -3.5939 10.0749 18 1 4.4052 -5.1717 8.8161 19 1 5.4653 -3.3084 9.9497 20 6 1.7446 -0.3052 6.0854 21 6 1.4192 0.1549 4.8439 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1299 -0.7216 1.2490 29 1 1.6765 -1.7489 1.2493 30 1 0.9937 0.7578 2.3564 31 1 3.0380 -2.1529 2.9465 32 1 3.6425 -2.9910 5.1606 33 1 5.7954 -3.2098 6.8860 34 1 1.3821 0.2067 6.9646 35 1 0.7986 1.0328 4.7403 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405217854.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:17 Heat of formation + Delta-G solvation = 23.796512 kcal Electronic energy + Delta-G solvation = -16578.639880 eV Core-core repulsion = 13961.303384 eV Total energy + Delta-G solvation = -2617.336496 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.16496 -38.99978 -36.89804 -35.52855 -33.84661 -31.29344 -30.38174 -28.23460 -27.57295 -25.91710 -23.47918 -22.81276 -21.42440 -19.10911 -18.61344 -17.14657 -16.69946 -16.55050 -15.92867 -15.63517 -15.07915 -14.60362 -14.58671 -14.34838 -14.24633 -13.84148 -13.73493 -13.52724 -13.24773 -12.92794 -12.79883 -12.73150 -12.54647 -12.43901 -12.24459 -11.96993 -11.79654 -11.52267 -11.12339 -11.03226 -10.25879 -9.33796 -8.52157 -8.11607 -5.96872 1.14376 1.24661 1.41793 1.55669 1.60435 1.60887 1.68707 2.29250 2.60154 2.88370 3.19969 3.69130 3.82212 3.92217 3.96613 4.50465 4.59034 4.69372 4.71694 4.83691 4.90379 4.93105 5.00753 5.10432 5.19821 5.28869 5.32038 5.36646 5.50897 5.72331 5.86283 6.02637 6.24261 6.43664 6.45443 6.69547 6.90833 7.12957 7.20748 7.39415 8.50970 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.041725 B = 0.004552 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.896118 B = 6150.137952 C = 6567.149190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.036 3.964 3 C -0.140 4.140 4 C 0.242 3.758 5 N -0.480 5.480 6 C 0.149 3.851 7 N -0.737 5.737 8 C 0.118 3.882 9 C -0.176 4.176 10 C -0.147 4.147 11 C 0.034 3.966 12 C -0.506 4.506 13 H 0.068 0.932 14 C 0.032 3.968 15 N -0.843 5.843 16 Si 0.973 3.027 17 H -0.260 1.260 18 H -0.269 1.269 19 H -0.270 1.270 20 C -0.194 4.194 21 C -0.158 4.158 22 H 0.093 0.907 23 H 0.082 0.918 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.404 0.596 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.280 0.720 34 H 0.097 0.903 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.385 6.817 -9.478 13.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.032 3.968 3 C -0.198 4.198 4 C -0.076 4.076 5 N -0.155 5.155 6 C 0.022 3.978 7 N -0.375 5.375 8 C 0.019 3.981 9 C -0.199 4.199 10 C -0.167 4.167 11 C 0.031 3.969 12 C -0.537 4.537 13 H 0.086 0.914 14 C -0.179 4.179 15 N -0.472 5.472 16 Si 0.795 3.205 17 H -0.183 1.183 18 H -0.194 1.194 19 H -0.195 1.195 20 C -0.214 4.214 21 C -0.180 4.180 22 H 0.111 0.889 23 H 0.101 0.899 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.101 0.899 27 H 0.111 0.889 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.242 0.758 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.493 5.795 -11.057 14.071 hybrid contribution 0.327 -0.385 1.069 1.182 sum -6.166 5.409 -9.988 12.925 Atomic orbital electron populations 1.21924 0.89203 1.03736 1.04829 1.18495 0.98467 0.95516 0.84325 1.21929 1.01865 0.91160 1.04825 1.29313 0.91887 0.92312 0.94051 1.81229 1.10421 1.10519 1.13329 1.20967 0.98028 0.95444 0.83366 1.43635 1.59893 1.33702 1.00279 1.17323 0.99692 0.95637 0.85495 1.20246 1.04058 0.99027 0.96523 1.20844 1.03014 1.00642 0.92231 1.17819 0.93486 0.91972 0.93626 1.19635 1.07664 1.31268 0.95152 0.91430 1.26571 0.94228 0.96381 1.00756 1.69927 1.06166 1.34689 1.36417 0.85301 0.78921 0.78194 0.78104 1.18316 1.19391 1.19466 1.20778 1.06096 0.98004 0.96543 1.20114 1.05077 1.01784 0.91049 0.88873 0.89908 0.92071 0.92273 0.89860 0.88906 0.93500 0.93130 0.75824 0.88145 0.88846 0.90933 0.88474 0.85551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.26 71.98 0.59 -1.16 16 2 C 0.04 0.60 0.70 -53.99 -0.04 0.57 16 3 C -0.14 -1.84 8.26 71.98 0.59 -1.25 16 4 C 0.24 5.43 13.86 89.44 1.24 6.67 16 5 N -0.48 -13.49 18.54 20.01 0.37 -13.12 16 6 C 0.15 3.53 3.74 86.38 0.32 3.85 16 7 N -0.74 -19.38 5.10 -338.99 -1.73 -21.11 16 8 C 0.12 4.48 6.67 38.67 0.26 4.74 16 9 C -0.18 -7.89 9.23 22.15 0.20 -7.68 16 10 C -0.15 -7.79 8.64 22.48 0.19 -7.60 16 11 C 0.03 1.84 5.57 -21.27 -0.12 1.72 16 12 C -0.51 -28.14 9.03 23.38 0.21 -27.93 16 13 H 0.07 3.65 7.91 -2.91 -0.02 3.63 16 14 C 0.03 1.69 5.13 85.23 0.44 2.13 16 15 N -0.84 -46.16 10.96 21.82 0.24 -45.92 16 16 Si 0.97 40.10 29.60 68.60 2.03 42.13 16 17 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 18 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 19 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 20 C -0.19 -9.21 9.74 22.48 0.22 -8.99 16 21 C -0.16 -6.25 9.82 22.15 0.22 -6.03 16 22 H 0.09 0.98 6.86 -2.39 -0.02 0.97 16 23 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.09 1.03 6.86 -2.39 -0.02 1.02 16 28 H 0.05 1.25 7.94 -2.39 -0.02 1.23 16 29 H 0.05 1.31 7.91 -2.39 -0.02 1.29 16 30 H 0.40 8.03 6.16 -92.71 -0.57 7.46 16 31 H 0.10 4.12 6.68 -2.91 -0.02 4.10 16 32 H 0.09 5.31 6.16 -2.91 -0.02 5.29 16 33 H 0.28 14.00 8.30 -92.71 -0.77 13.23 16 34 H 0.10 4.37 8.06 -2.91 -0.02 4.35 16 35 H 0.13 3.98 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -64.63 297.63 5.77 -58.86 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.52 Total: 20.13 kcal Atomic # 6 Polarization: -45.30 SS G_CDS: 4.34 Total: -40.97 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -1.12 Total: -80.15 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Total: -64.63 5.77 -58.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405217854.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.657 kcal (2) G-P(sol) polarization free energy of solvation -64.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds