Wall clock time and date at job start Mon Mar 30 2020 07:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 110.34148 * 2 1 4 4 C 1.54316 * 110.29570 * 237.89307 * 2 1 3 5 5 C 1.54323 * 102.45112 * 267.56746 * 4 2 1 6 6 C 1.52999 * 110.30077 * 214.58429 * 5 4 2 7 7 C 1.53004 * 110.29941 * 92.43871 * 5 4 2 8 8 C 1.51410 * 105.18200 * 333.50909 * 5 4 2 9 9 C 1.37901 * 130.19178 * 197.57737 * 8 5 4 10 10 C 1.40567 * 120.01130 * 180.22773 * 9 8 5 11 11 C 1.41393 * 120.29160 * 179.69736 * 10 9 8 12 12 H 1.08010 * 119.99874 * 151.42207 * 11 10 9 13 13 C 1.39941 * 120.00406 * 331.69776 * 11 10 9 14 14 N 1.30822 * 120.00522 * 159.72043 * 13 11 10 15 15 Si 1.86799 * 119.99881 * 339.71806 * 13 11 10 16 16 H 1.48494 * 109.47425 * 94.61160 * 15 13 11 17 17 H 1.48500 * 109.47197 * 214.61577 * 15 13 11 18 18 H 1.48501 * 109.47253 * 334.61156 * 15 13 11 19 19 C 1.40733 * 119.41453 * 359.42596 * 10 9 8 20 20 C 1.37445 * 119.67693 * 0.27185 * 19 10 9 21 21 C 1.38679 * 109.70471 * 17.25401 * 8 5 4 22 22 H 1.09001 * 109.47095 * 304.66823 * 1 2 3 23 23 H 1.09005 * 109.46759 * 64.66372 * 1 2 3 24 24 H 1.08996 * 109.47301 * 184.66537 * 1 2 3 25 25 H 1.08999 * 109.46739 * 180.65756 * 3 2 1 26 26 H 1.09004 * 109.47042 * 300.65866 * 3 2 1 27 27 H 1.09000 * 109.46852 * 60.65685 * 3 2 1 28 28 H 1.09000 * 110.81574 * 149.32802 * 4 2 1 29 29 H 1.09007 * 110.98004 * 25.88205 * 4 2 1 30 30 H 1.08999 * 109.47402 * 177.21560 * 6 5 4 31 31 H 1.09009 * 109.47148 * 297.21032 * 6 5 4 32 32 H 1.08993 * 109.47449 * 57.21015 * 6 5 4 33 33 H 1.09001 * 109.46894 * 298.14127 * 7 5 4 34 34 H 1.08992 * 109.47299 * 58.14412 * 7 5 4 35 35 H 1.09002 * 109.46497 * 178.14673 * 7 5 4 36 36 H 1.08002 * 119.98959 * 359.92500 * 9 8 5 37 37 H 0.96996 * 120.00270 * 180.02562 * 14 13 11 38 38 H 1.07997 * 120.16191 * 180.29234 * 19 10 9 39 39 H 1.08005 * 119.72488 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0619 1.4346 0.0000 4 6 2.0653 -0.7693 -1.2260 5 6 2.2407 -2.1987 -0.6713 6 6 3.4543 -2.8725 -1.3148 7 6 0.9777 -3.0246 -0.9236 8 6 2.4648 -2.0222 0.8157 9 6 2.9881 -2.8948 1.7465 10 6 3.0961 -2.5051 3.0927 11 6 3.6258 -3.3973 4.0532 12 1 4.1322 -3.0126 4.9262 13 6 3.4991 -4.7789 3.8699 14 7 4.2968 -5.5989 4.5045 15 14 2.1909 -5.4522 2.7189 16 1 2.7820 -5.6776 1.3755 17 1 1.6744 -6.7374 3.2545 18 1 1.0762 -4.4769 2.6119 19 6 2.6776 -1.2170 3.4751 20 6 2.1646 -0.3599 2.5310 21 6 2.0555 -0.7552 1.2031 22 1 -0.3633 0.5846 0.8452 23 1 -0.3633 0.4398 -0.9289 24 1 -0.3634 -1.0242 0.0836 25 1 3.1517 1.4180 -0.0118 26 1 1.6968 1.9575 -0.8841 27 1 1.7160 1.9503 0.8958 28 1 3.0216 -0.3606 -1.5525 29 1 1.3418 -0.7563 -2.0413 30 1 3.5949 -3.8613 -0.8781 31 1 3.2896 -2.9694 -2.3880 32 1 4.3429 -2.2670 -1.1368 33 1 0.1361 -2.5703 -0.4008 34 1 0.7691 -3.0521 -1.9930 35 1 1.1283 -4.0398 -0.5565 36 1 3.3105 -3.8796 1.4419 37 1 4.2091 -6.5565 4.3771 38 1 2.7596 -0.9033 4.5052 39 1 1.8428 0.6287 2.8236 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584618403.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:16 Heat of formation + Delta-G solvation = -8.119821 kcal Electronic energy + Delta-G solvation = -18341.897040 eV Core-core repulsion = 15826.716892 eV Total energy + Delta-G solvation = -2515.180148 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.91886 -36.13054 -33.95277 -33.22115 -29.78640 -28.87086 -27.46240 -26.58058 -26.33121 -24.82915 -21.75558 -21.15016 -18.79812 -18.32672 -17.12269 -15.45668 -14.72404 -14.51020 -14.34314 -13.65597 -13.43692 -13.04739 -12.85501 -12.79747 -12.57748 -12.19896 -12.16894 -11.83987 -11.62243 -11.41580 -11.31114 -11.16189 -10.75685 -10.64908 -10.51099 -10.33699 -10.22444 -10.01949 -9.69397 -9.61916 -9.36460 -8.97804 -7.53197 -7.38686 -6.92158 -4.41972 2.62150 2.74198 3.13045 3.22736 3.34301 4.01303 4.48840 5.02257 5.06063 5.26939 5.38861 5.49306 5.51009 5.77852 5.85914 5.94524 5.96196 5.97790 6.01549 6.09875 6.12120 6.22443 6.24503 6.29690 6.29986 6.42514 6.53443 6.55415 6.59105 6.66474 6.79618 6.85702 6.95821 7.00370 7.31033 7.51150 7.67037 7.88835 7.97717 8.18628 8.40122 8.72175 8.85981 10.10537 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.026193 B = 0.009360 C = 0.007932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.713842 B = 2990.617701 C = 3529.122620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.008 4.008 3 C -0.132 4.132 4 C -0.100 4.100 5 C -0.027 4.027 6 C -0.135 4.135 7 C -0.136 4.136 8 C -0.043 4.043 9 C -0.221 4.221 10 C 0.095 3.905 11 C -0.451 4.451 12 H 0.089 0.911 13 C 0.086 3.914 14 N -0.810 5.810 15 Si 0.908 3.092 16 H -0.270 1.270 17 H -0.293 1.293 18 H -0.245 1.245 19 C -0.210 4.210 20 C -0.066 4.066 21 C -0.208 4.208 22 H 0.049 0.951 23 H 0.044 0.956 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.097 0.903 37 H 0.284 0.716 38 H 0.099 0.901 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.397 6.009 -10.058 12.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.008 4.008 3 C -0.189 4.189 4 C -0.137 4.137 5 C -0.027 4.027 6 C -0.193 4.193 7 C -0.193 4.193 8 C -0.043 4.043 9 C -0.240 4.240 10 C 0.092 3.908 11 C -0.479 4.479 12 H 0.107 0.893 13 C -0.132 4.132 14 N -0.434 5.434 15 Si 0.735 3.265 16 H -0.196 1.196 17 H -0.220 1.220 18 H -0.168 1.168 19 C -0.230 4.230 20 C -0.084 4.084 21 C -0.210 4.210 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.118 0.882 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.278 5.759 -9.941 12.643 hybrid contribution -0.392 -0.540 -0.272 0.720 sum -5.669 5.218 -10.212 12.793 Atomic orbital electron populations 1.21925 0.95243 1.01730 1.00269 1.19720 0.94160 0.93879 0.92996 1.21805 1.00794 0.95884 1.00446 1.22457 1.00400 0.94362 0.96502 1.20021 0.94967 0.94907 0.92789 1.21818 0.97595 1.00765 0.99073 1.21902 0.97427 0.99714 1.00298 1.19918 0.97204 0.94438 0.92717 1.20499 1.11190 0.99526 0.92812 1.17591 0.89033 0.92681 0.91445 1.19450 1.31369 0.89957 1.07166 0.89282 1.26120 0.95301 0.97148 0.94663 1.69714 1.31647 1.05097 1.36975 0.86377 0.82689 0.77842 0.79585 1.19604 1.22037 1.16817 1.20891 1.08266 0.96255 0.97549 1.20078 0.98957 0.97362 0.92002 1.19661 1.11821 0.96158 0.93310 0.93162 0.93686 0.92338 0.92862 0.93734 0.93102 0.91599 0.91822 0.92780 0.93364 0.92557 0.92022 0.93115 0.93062 0.88574 0.90585 0.88246 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.38 37.16 0.31 -1.68 16 2 C -0.01 -0.12 0.89 -154.60 -0.14 -0.26 16 3 C -0.13 -1.90 8.31 37.16 0.31 -1.60 16 4 C -0.10 -1.53 5.13 -25.35 -0.13 -1.66 16 5 C -0.03 -0.47 0.89 -154.62 -0.14 -0.61 16 6 C -0.14 -2.22 8.31 37.16 0.31 -1.91 16 7 C -0.14 -2.21 8.38 37.16 0.31 -1.90 16 8 C -0.04 -0.91 4.91 -104.23 -0.51 -1.43 16 9 C -0.22 -5.39 6.97 -38.83 -0.27 -5.66 16 10 C 0.10 2.45 5.12 -106.88 -0.55 1.90 16 11 C -0.45 -12.41 9.56 -37.74 -0.36 -12.77 16 12 H 0.09 2.56 8.06 -52.48 -0.42 2.13 16 13 C 0.09 2.31 5.38 -17.34 -0.09 2.21 16 14 N -0.81 -21.97 13.93 55.55 0.77 -21.19 16 15 Si 0.91 21.32 24.56 -169.99 -4.17 17.15 16 16 H -0.27 -6.15 6.64 56.52 0.38 -5.78 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.24 -5.90 6.97 56.52 0.39 -5.51 16 19 C -0.21 -4.96 9.80 -38.93 -0.38 -5.34 16 20 C -0.07 -1.39 9.72 -39.60 -0.38 -1.78 16 21 C -0.21 -4.23 4.95 -103.82 -0.51 -4.74 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.04 0.56 8.13 -51.93 -0.42 0.14 16 24 H 0.06 0.91 5.52 -51.93 -0.29 0.62 16 25 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.72 7.88 -51.93 -0.41 0.31 16 28 H 0.07 0.97 7.67 -51.93 -0.40 0.58 16 29 H 0.06 0.85 7.66 -51.93 -0.40 0.45 16 30 H 0.05 0.95 7.87 -51.93 -0.41 0.54 16 31 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.06 0.93 8.13 -51.93 -0.42 0.50 16 33 H 0.06 1.00 5.51 -51.93 -0.29 0.72 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 2.39 4.42 -52.49 -0.23 2.16 16 37 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 38 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 39 H 0.09 1.65 7.84 -52.48 -0.41 1.24 16 LS Contribution 299.76 15.07 4.52 4.52 Total: -1.00 -27.30 299.76 -7.34 -34.64 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.22 Total: 2.08 kcal Atomic # 6 Polarization: -34.97 SS G_CDS: -2.23 Total: -37.19 kcal Atomic # 7 Polarization: -21.97 SS G_CDS: 0.77 Total: -21.19 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.17 Total: 17.15 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.30 -7.34 -34.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584618403.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.519 kcal (2) G-P(sol) polarization free energy of solvation -27.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds