Wall clock time and date at job start Mon Mar 30 2020 07:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 110.34148 * 2 1 4 4 C 1.54316 * 110.29570 * 237.89307 * 2 1 3 5 5 C 1.54323 * 102.45112 * 267.56746 * 4 2 1 6 6 C 1.52999 * 110.30077 * 214.58429 * 5 4 2 7 7 C 1.53004 * 110.29941 * 92.43871 * 5 4 2 8 8 C 1.51410 * 105.18200 * 333.50909 * 5 4 2 9 9 C 1.37901 * 130.19178 * 197.57737 * 8 5 4 10 10 C 1.40567 * 120.01130 * 180.22773 * 9 8 5 11 11 C 1.41393 * 120.29160 * 179.69736 * 10 9 8 12 12 H 1.08010 * 119.99874 * 151.42207 * 11 10 9 13 13 C 1.39941 * 120.00406 * 331.69776 * 11 10 9 14 14 N 1.30822 * 120.00522 * 159.72043 * 13 11 10 15 15 Si 1.86799 * 119.99881 * 339.71806 * 13 11 10 16 16 H 1.48494 * 109.47425 * 94.61160 * 15 13 11 17 17 H 1.48500 * 109.47197 * 214.61577 * 15 13 11 18 18 H 1.48501 * 109.47253 * 334.61156 * 15 13 11 19 19 C 1.40733 * 119.41453 * 359.42596 * 10 9 8 20 20 C 1.37445 * 119.67693 * 0.27185 * 19 10 9 21 21 C 1.38679 * 109.70471 * 17.25401 * 8 5 4 22 22 H 1.09001 * 109.47095 * 304.66823 * 1 2 3 23 23 H 1.09005 * 109.46759 * 64.66372 * 1 2 3 24 24 H 1.08996 * 109.47301 * 184.66537 * 1 2 3 25 25 H 1.08999 * 109.46739 * 180.65756 * 3 2 1 26 26 H 1.09004 * 109.47042 * 300.65866 * 3 2 1 27 27 H 1.09000 * 109.46852 * 60.65685 * 3 2 1 28 28 H 1.09000 * 110.81574 * 149.32802 * 4 2 1 29 29 H 1.09007 * 110.98004 * 25.88205 * 4 2 1 30 30 H 1.08999 * 109.47402 * 177.21560 * 6 5 4 31 31 H 1.09009 * 109.47148 * 297.21032 * 6 5 4 32 32 H 1.08993 * 109.47449 * 57.21015 * 6 5 4 33 33 H 1.09001 * 109.46894 * 298.14127 * 7 5 4 34 34 H 1.08992 * 109.47299 * 58.14412 * 7 5 4 35 35 H 1.09002 * 109.46497 * 178.14673 * 7 5 4 36 36 H 1.08002 * 119.98959 * 359.92500 * 9 8 5 37 37 H 0.96996 * 120.00270 * 180.02562 * 14 13 11 38 38 H 1.07997 * 120.16191 * 180.29234 * 19 10 9 39 39 H 1.08005 * 119.72488 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0619 1.4346 0.0000 4 6 2.0653 -0.7693 -1.2260 5 6 2.2407 -2.1987 -0.6713 6 6 3.4543 -2.8725 -1.3148 7 6 0.9777 -3.0246 -0.9236 8 6 2.4648 -2.0222 0.8157 9 6 2.9881 -2.8948 1.7465 10 6 3.0961 -2.5051 3.0927 11 6 3.6258 -3.3973 4.0532 12 1 4.1322 -3.0126 4.9262 13 6 3.4991 -4.7789 3.8699 14 7 4.2968 -5.5989 4.5045 15 14 2.1909 -5.4522 2.7189 16 1 2.7820 -5.6776 1.3755 17 1 1.6744 -6.7374 3.2545 18 1 1.0762 -4.4769 2.6119 19 6 2.6776 -1.2170 3.4751 20 6 2.1646 -0.3599 2.5310 21 6 2.0555 -0.7552 1.2031 22 1 -0.3633 0.5846 0.8452 23 1 -0.3633 0.4398 -0.9289 24 1 -0.3634 -1.0242 0.0836 25 1 3.1517 1.4180 -0.0118 26 1 1.6968 1.9575 -0.8841 27 1 1.7160 1.9503 0.8958 28 1 3.0216 -0.3606 -1.5525 29 1 1.3418 -0.7563 -2.0413 30 1 3.5949 -3.8613 -0.8781 31 1 3.2896 -2.9694 -2.3880 32 1 4.3429 -2.2670 -1.1368 33 1 0.1361 -2.5703 -0.4008 34 1 0.7691 -3.0521 -1.9930 35 1 1.1283 -4.0398 -0.5565 36 1 3.3105 -3.8796 1.4419 37 1 4.2091 -6.5565 4.3771 38 1 2.7596 -0.9033 4.5052 39 1 1.8428 0.6287 2.8236 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584618403.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:15 Heat of formation + Delta-G solvation = -21.561778 kcal Electronic energy + Delta-G solvation = -18342.479927 eV Core-core repulsion = 15826.716892 eV Total energy + Delta-G solvation = -2515.763035 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.42661 -37.85221 -35.39160 -35.03989 -31.60000 -30.58686 -28.65594 -27.86778 -27.50764 -26.65290 -23.45309 -22.78922 -20.35326 -19.83935 -19.02763 -17.21353 -16.28756 -16.09076 -15.73888 -15.24403 -14.97224 -14.72934 -14.38541 -14.24932 -14.14385 -13.55534 -13.41923 -13.25640 -12.97107 -12.93954 -12.79266 -12.59512 -12.50778 -12.26673 -11.97094 -11.83856 -11.74328 -11.53423 -11.25655 -11.14032 -10.94355 -10.77986 -9.35038 -9.18769 -8.92406 -6.47141 0.79814 0.90123 1.20393 1.34589 1.42876 2.08545 2.57199 3.48556 3.67610 3.74194 4.06164 4.15947 4.25874 4.40976 4.46703 4.55092 4.65210 4.75839 4.78138 4.86804 4.89240 4.91175 4.93556 4.98544 5.02667 5.09389 5.13296 5.14123 5.20425 5.31176 5.34202 5.44657 5.54966 5.55768 5.68446 5.72088 5.87683 5.97824 6.18964 6.29033 6.44029 6.76928 6.87436 8.16712 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.026193 B = 0.009360 C = 0.007932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.713842 B = 2990.617701 C = 3529.122620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.011 4.011 3 C -0.130 4.130 4 C -0.092 4.092 5 C -0.032 4.032 6 C -0.134 4.134 7 C -0.136 4.136 8 C -0.057 4.057 9 C -0.233 4.233 10 C 0.071 3.929 11 C -0.491 4.491 12 H 0.054 0.946 13 C 0.051 3.949 14 N -0.852 5.852 15 Si 0.962 3.038 16 H -0.261 1.261 17 H -0.277 1.277 18 H -0.258 1.258 19 C -0.226 4.226 20 C -0.070 4.070 21 C -0.192 4.192 22 H 0.049 0.951 23 H 0.077 0.923 24 H 0.047 0.953 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.032 0.968 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.032 0.968 36 H 0.085 0.915 37 H 0.292 0.708 38 H 0.098 0.902 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.507 7.923 -13.904 17.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.011 4.011 3 C -0.187 4.187 4 C -0.129 4.129 5 C -0.032 4.032 6 C -0.191 4.191 7 C -0.193 4.193 8 C -0.057 4.057 9 C -0.252 4.252 10 C 0.068 3.932 11 C -0.521 4.521 12 H 0.072 0.928 13 C -0.163 4.163 14 N -0.479 5.479 15 Si 0.786 3.214 16 H -0.187 1.187 17 H -0.203 1.203 18 H -0.181 1.181 19 C -0.245 4.245 20 C -0.088 4.088 21 C -0.193 4.193 22 H 0.068 0.932 23 H 0.096 0.904 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.115 0.885 30 H 0.052 0.948 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.052 0.948 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.117 0.883 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.383 7.679 -13.786 17.422 hybrid contribution 0.227 -0.896 0.832 1.244 sum -7.156 6.783 -12.953 16.279 Atomic orbital electron populations 1.21905 0.93521 1.01467 1.02102 1.19885 0.95473 0.94688 0.91045 1.21779 1.00253 0.94611 1.02053 1.22500 1.01790 0.91912 0.96738 1.20196 0.96042 0.97159 0.89788 1.21814 0.96946 0.99343 1.01040 1.21923 0.96456 0.98319 1.02619 1.20502 0.95835 0.94224 0.95132 1.20547 1.11937 0.99839 0.92882 1.17736 0.90056 0.93416 0.91952 1.19432 1.33996 0.91272 1.07364 0.92795 1.26717 0.96633 0.96943 0.96012 1.69738 1.33265 1.05716 1.39140 0.85556 0.80011 0.77399 0.78414 1.18679 1.20328 1.18147 1.21073 1.08847 0.96153 0.98463 1.20400 0.97983 0.98190 0.92180 1.20407 1.08382 0.96169 0.94308 0.93218 0.90404 0.93385 0.93738 0.90693 0.93033 0.90849 0.88491 0.94837 0.89891 0.93229 0.92202 0.89497 0.94830 0.89691 0.89755 0.88334 0.86389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 8.38 71.98 0.60 -2.63 16 2 C -0.01 -0.30 0.89 -52.24 -0.05 -0.35 16 3 C -0.13 -3.10 8.31 71.98 0.60 -2.50 16 4 C -0.09 -2.32 5.13 31.49 0.16 -2.16 16 5 C -0.03 -1.01 0.89 -52.25 -0.05 -1.05 16 6 C -0.13 -4.03 8.31 71.98 0.60 -3.43 16 7 C -0.14 -3.90 8.38 71.98 0.60 -3.30 16 8 C -0.06 -2.36 4.91 -19.61 -0.10 -2.45 16 9 C -0.23 -11.54 6.97 22.76 0.16 -11.38 16 10 C 0.07 3.80 5.12 -21.32 -0.11 3.69 16 11 C -0.49 -29.03 9.56 23.46 0.22 -28.80 16 12 H 0.05 3.41 8.06 -2.91 -0.02 3.39 16 13 C 0.05 2.88 5.38 85.26 0.46 3.33 16 14 N -0.85 -48.81 13.93 21.82 0.30 -48.51 16 15 Si 0.96 45.54 24.56 68.60 1.68 47.23 16 16 H -0.26 -11.82 6.64 99.48 0.66 -11.16 16 17 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 18 H -0.26 -12.52 6.97 99.48 0.69 -11.82 16 19 C -0.23 -10.95 9.80 22.69 0.22 -10.73 16 20 C -0.07 -2.86 9.72 22.26 0.22 -2.64 16 21 C -0.19 -7.32 4.95 -19.34 -0.10 -7.41 16 22 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.08 1.43 8.13 -2.38 -0.02 1.41 16 24 H 0.05 1.28 5.52 -2.39 -0.01 1.27 16 25 H 0.04 1.14 8.13 -2.39 -0.02 1.12 16 26 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.05 1.22 7.88 -2.39 -0.02 1.21 16 28 H 0.07 1.77 7.67 -2.39 -0.02 1.75 16 29 H 0.10 1.88 7.66 -2.38 -0.02 1.86 16 30 H 0.03 1.12 7.87 -2.39 -0.02 1.10 16 31 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.05 1.52 8.13 -2.39 -0.02 1.50 16 33 H 0.06 1.73 5.51 -2.39 -0.01 1.71 16 34 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.09 4.34 4.42 -2.91 -0.01 4.32 16 37 H 0.29 15.04 8.30 -92.71 -0.77 14.28 16 38 H 0.10 4.64 8.06 -2.91 -0.02 4.61 16 39 H 0.12 4.11 7.84 -2.91 -0.02 4.09 16 Total: -1.00 -63.01 299.76 6.39 -56.61 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.95 Total: 16.49 kcal Atomic # 6 Polarization: -75.27 SS G_CDS: 3.45 Total: -71.82 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.30 Total: -48.51 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.68 Total: 47.23 kcal Total: -63.01 6.39 -56.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584618403.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.052 kcal (2) G-P(sol) polarization free energy of solvation -63.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds