Wall clock time and date at job start Mon Mar 30 2020 06:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47378 * 2 1 4 4 N 1.46900 * 109.46952 * 239.99826 * 2 1 3 5 5 C 1.46899 * 111.00167 * 60.00174 * 4 2 1 6 6 C 1.50694 * 109.47165 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00224 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00034 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99686 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00050 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47368 * 89.99742 * 10 8 6 12 12 H 1.48508 * 109.46950 * 209.99911 * 10 8 6 13 13 H 1.48503 * 109.47179 * 329.99590 * 10 8 6 14 14 C 1.50705 * 109.47050 * 120.00223 * 2 1 3 15 15 C 1.38379 * 119.92632 * 119.97643 * 14 2 1 16 16 C 1.38342 * 120.30369 * 180.02562 * 15 14 2 17 17 C 1.37972 * 120.15304 * 359.67043 * 16 15 14 18 18 C 1.39616 * 119.84009 * 0.60500 * 17 16 15 19 19 C 1.43205 * 120.14614 * 179.69727 * 18 17 16 20 20 N 5.95827 * 90.18338 * 90.26837 * 2 1 3 21 21 C 1.37927 * 119.91836 * 299.99659 * 14 2 1 22 22 H 1.09003 * 109.46825 * 300.00041 * 1 2 3 23 23 H 1.08997 * 109.46785 * 59.99912 * 1 2 3 24 24 H 1.09000 * 109.47354 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47262 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.46776 * 300.00087 * 3 2 1 27 27 H 1.09005 * 109.47429 * 59.99698 * 3 2 1 28 28 H 1.00898 * 111.00107 * 183.96030 * 4 2 1 29 29 H 1.09001 * 109.46964 * 300.00029 * 5 4 2 30 30 H 1.08993 * 109.46784 * 59.99650 * 5 4 2 31 31 H 0.97007 * 119.99707 * 180.02562 * 9 8 6 32 32 H 1.08001 * 119.84560 * 0.02562 * 15 14 2 33 33 H 1.08002 * 119.92181 * 180.02562 * 16 15 14 34 34 H 1.07990 * 120.07788 * 180.30317 * 17 16 15 35 35 H 1.08003 * 120.08118 * 0.02562 * 21 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 1.5487 -0.0265 -2.4211 6 6 2.0692 -0.7638 -3.6278 7 1 2.6884 -1.6394 -3.5001 8 6 1.7559 -0.3200 -4.8951 9 7 1.0024 0.7465 -5.0506 10 14 2.4006 -1.2344 -6.3909 11 1 1.4274 -2.2838 -6.7871 12 1 2.5837 -0.2798 -7.5137 13 1 3.7033 -1.8666 -6.0613 14 6 2.0324 -0.7105 1.2305 15 6 2.8275 -1.8357 1.1017 16 6 3.2924 -2.4943 2.2260 17 6 2.9714 -2.0285 3.4844 18 6 2.1649 -0.8972 3.6216 19 6 1.8223 -0.4119 4.9246 20 7 1.5491 -0.0279 5.9582 21 6 1.6982 -0.2378 2.4824 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6768 1.9562 -0.8900 27 1 1.6768 1.9564 0.8900 28 1 3.0262 -0.7627 -1.1909 29 1 0.4588 -0.0266 -2.4379 30 1 1.9122 1.0009 -2.4378 31 1 0.7816 1.0586 -5.9422 32 1 3.0861 -2.2015 0.1190 33 1 3.9129 -3.3717 2.1183 34 1 3.3390 -2.5407 4.3611 35 1 1.0770 0.6401 2.5815 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595634823.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:19 Heat of formation + Delta-G solvation = 50.553546 kcal Electronic energy + Delta-G solvation = -16770.072636 eV Core-core repulsion = 14153.896412 eV Total energy + Delta-G solvation = -2616.176224 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 3.97 seconds Orbital eigenvalues (eV) -39.90410 -37.31506 -36.14730 -33.09466 -31.47662 -31.03820 -29.20970 -26.91980 -26.31329 -23.67179 -23.46692 -21.55187 -19.63506 -17.99992 -16.56866 -16.18268 -15.51312 -14.89606 -14.39284 -14.23136 -14.11238 -13.77334 -13.55400 -13.16967 -12.91934 -12.81246 -12.34058 -12.22193 -11.96642 -11.68163 -11.58865 -11.27633 -11.08140 -10.91393 -10.69508 -10.56096 -10.35386 -9.85514 -9.21348 -8.95140 -8.72839 -8.50737 -7.38611 -6.07154 -4.08591 0.80110 1.32594 2.57418 2.93720 3.29619 3.36011 3.38736 3.81272 3.86739 4.39135 4.72463 4.81188 5.05812 5.08797 5.29360 5.38847 5.43163 5.46044 5.57172 5.78540 5.89526 5.98071 6.13646 6.16325 6.22417 6.30886 6.43717 6.60105 6.64726 6.71544 6.86522 7.23915 7.38836 7.40381 7.73466 8.08077 8.30337 8.53385 8.99996 9.56202 11.03774 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.043354 B = 0.004765 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.685457 B = 5875.218847 C = 6327.807021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.144 3.856 3 C -0.177 4.177 4 N -0.678 5.678 5 C 0.190 3.810 6 C -0.515 4.515 7 H 0.061 0.939 8 C 0.057 3.943 9 N -0.897 5.897 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.274 1.274 14 C -0.059 4.059 15 C -0.069 4.069 16 C -0.123 4.123 17 C -0.081 4.081 18 C -0.040 4.040 19 C 0.263 3.737 20 N -0.432 5.432 21 C -0.068 4.068 22 H 0.048 0.952 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.329 0.671 29 H 0.034 0.966 30 H -0.006 1.006 31 H 0.261 0.739 32 H 0.146 0.854 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.355 -3.423 12.551 13.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.052 3.948 3 C -0.236 4.236 4 N -0.308 5.308 5 C 0.064 3.936 6 C -0.554 4.554 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.725 3.275 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.060 4.060 15 C -0.088 4.088 16 C -0.141 4.141 17 C -0.102 4.102 18 C -0.044 4.044 19 C -0.052 4.052 20 N -0.108 5.108 21 C -0.089 4.089 22 H 0.067 0.933 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.147 0.853 29 H 0.052 0.948 30 H 0.012 0.988 31 H 0.071 0.929 32 H 0.164 0.836 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.331 -3.173 14.001 14.544 hybrid contribution 0.924 0.267 -1.306 1.622 sum 3.255 -2.906 12.695 13.424 Atomic orbital electron populations 1.21871 0.93224 1.02475 1.01570 1.19761 0.95534 0.90687 0.88783 1.22571 1.01098 0.97539 1.02406 1.60957 1.15080 1.53200 1.01599 1.19668 0.96625 0.92409 0.84934 1.21177 1.31621 1.12287 0.90288 0.92039 1.24963 0.95301 0.95098 0.99113 1.69951 1.37306 1.23660 1.22730 0.86510 0.79273 0.79441 0.82230 1.20653 1.21365 1.19870 1.19946 0.96530 0.95624 0.93879 1.21558 0.93904 0.93415 0.99928 1.21135 1.00773 1.00485 0.91739 1.21087 0.96385 0.94427 0.98278 1.15914 1.04007 0.98699 0.85765 1.25820 0.93259 0.93270 0.92858 1.81222 1.09195 1.08811 1.11535 1.20988 0.98312 0.98981 0.90603 0.93318 0.91200 0.91960 0.92880 0.90913 0.93061 0.85308 0.94788 0.98830 0.92915 0.83590 0.85124 0.85575 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 8.05 37.16 0.30 -1.78 16 2 C 0.14 2.24 0.79 -132.75 -0.10 2.14 16 3 C -0.18 -2.68 8.04 37.16 0.30 -2.38 16 4 N -0.68 -12.74 5.08 -102.40 -0.52 -13.26 16 5 C 0.19 4.53 4.65 -4.98 -0.02 4.51 16 6 C -0.52 -13.74 9.32 -34.44 -0.32 -14.06 16 7 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -25.76 13.29 55.43 0.74 -25.03 16 10 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 14 C -0.06 -0.78 4.77 -104.68 -0.50 -1.28 16 15 C -0.07 -0.84 9.14 -39.49 -0.36 -1.20 16 16 C -0.12 -1.21 10.03 -39.64 -0.40 -1.61 16 17 C -0.08 -0.79 9.76 -39.17 -0.38 -1.17 16 18 C -0.04 -0.45 5.73 -106.93 -0.61 -1.06 16 19 C 0.26 3.24 15.33 -22.47 -0.34 2.90 16 20 N -0.43 -6.16 18.54 41.83 0.78 -5.38 16 21 C -0.07 -0.80 8.41 -39.17 -0.33 -1.13 16 22 H 0.05 0.63 7.38 -51.93 -0.38 0.25 16 23 H 0.07 1.23 6.40 -51.93 -0.33 0.89 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.07 1.26 6.40 -51.93 -0.33 0.93 16 27 H 0.05 0.66 7.38 -51.93 -0.38 0.27 16 28 H 0.33 5.91 7.54 -39.29 -0.30 5.61 16 29 H 0.03 0.88 6.30 -51.93 -0.33 0.55 16 30 H -0.01 -0.15 6.30 -51.93 -0.33 -0.48 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.15 1.87 6.39 -52.49 -0.34 1.54 16 33 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.13 1.40 7.09 -52.48 -0.37 1.03 16 LS Contribution 296.96 15.07 4.48 4.48 Total: -1.00 -28.84 296.96 -6.76 -35.60 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -4.33 Total: 2.35 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -2.88 Total: -14.67 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.99 Total: -43.67 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.84 -6.76 -35.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595634823.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.149 kcal (2) G-P(sol) polarization free energy of solvation -28.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.97 seconds