Wall clock time and date at job start Mon Mar 30 2020 06:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47378 * 2 1 4 4 N 1.46900 * 109.46952 * 239.99826 * 2 1 3 5 5 C 1.46899 * 111.00167 * 60.00174 * 4 2 1 6 6 C 1.50694 * 109.47165 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00224 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00034 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99686 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00050 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47368 * 89.99742 * 10 8 6 12 12 H 1.48508 * 109.46950 * 209.99911 * 10 8 6 13 13 H 1.48503 * 109.47179 * 329.99590 * 10 8 6 14 14 C 1.50705 * 109.47050 * 120.00223 * 2 1 3 15 15 C 1.38379 * 119.92632 * 119.97643 * 14 2 1 16 16 C 1.38342 * 120.30369 * 180.02562 * 15 14 2 17 17 C 1.37972 * 120.15304 * 359.67043 * 16 15 14 18 18 C 1.39616 * 119.84009 * 0.60500 * 17 16 15 19 19 C 1.43205 * 120.14614 * 179.69727 * 18 17 16 20 20 N 5.95827 * 90.18338 * 90.26837 * 2 1 3 21 21 C 1.37927 * 119.91836 * 299.99659 * 14 2 1 22 22 H 1.09003 * 109.46825 * 300.00041 * 1 2 3 23 23 H 1.08997 * 109.46785 * 59.99912 * 1 2 3 24 24 H 1.09000 * 109.47354 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47262 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.46776 * 300.00087 * 3 2 1 27 27 H 1.09005 * 109.47429 * 59.99698 * 3 2 1 28 28 H 1.00898 * 111.00107 * 183.96030 * 4 2 1 29 29 H 1.09001 * 109.46964 * 300.00029 * 5 4 2 30 30 H 1.08993 * 109.46784 * 59.99650 * 5 4 2 31 31 H 0.97007 * 119.99707 * 180.02562 * 9 8 6 32 32 H 1.08001 * 119.84560 * 0.02562 * 15 14 2 33 33 H 1.08002 * 119.92181 * 180.02562 * 16 15 14 34 34 H 1.07990 * 120.07788 * 180.30317 * 17 16 15 35 35 H 1.08003 * 120.08118 * 0.02562 * 21 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 1.5487 -0.0265 -2.4211 6 6 2.0692 -0.7638 -3.6278 7 1 2.6884 -1.6394 -3.5001 8 6 1.7559 -0.3200 -4.8951 9 7 1.0024 0.7465 -5.0506 10 14 2.4006 -1.2344 -6.3909 11 1 1.4274 -2.2838 -6.7871 12 1 2.5837 -0.2798 -7.5137 13 1 3.7033 -1.8666 -6.0613 14 6 2.0324 -0.7105 1.2305 15 6 2.8275 -1.8357 1.1017 16 6 3.2924 -2.4943 2.2260 17 6 2.9714 -2.0285 3.4844 18 6 2.1649 -0.8972 3.6216 19 6 1.8223 -0.4119 4.9246 20 7 1.5491 -0.0279 5.9582 21 6 1.6982 -0.2378 2.4824 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6768 1.9562 -0.8900 27 1 1.6768 1.9564 0.8900 28 1 3.0262 -0.7627 -1.1909 29 1 0.4588 -0.0266 -2.4379 30 1 1.9122 1.0009 -2.4378 31 1 0.7816 1.0586 -5.9422 32 1 3.0861 -2.2015 0.1190 33 1 3.9129 -3.3717 2.1183 34 1 3.3390 -2.5407 4.3611 35 1 1.0770 0.6401 2.5815 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595634823.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:15 Heat of formation + Delta-G solvation = 34.105195 kcal Electronic energy + Delta-G solvation = -16770.785890 eV Core-core repulsion = 14153.896412 eV Total energy + Delta-G solvation = -2616.889478 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 4.03 seconds Orbital eigenvalues (eV) -40.91966 -38.52803 -37.23380 -34.99897 -32.73750 -32.17680 -30.39880 -28.31101 -28.03147 -24.93093 -24.59178 -22.96581 -20.78943 -19.31337 -18.27324 -17.23672 -16.65672 -16.49886 -15.92835 -15.34307 -15.18140 -15.04872 -14.69363 -14.32375 -14.23154 -14.04232 -13.85665 -13.67875 -13.06616 -12.96577 -12.84614 -12.79683 -12.54732 -12.42816 -12.12294 -12.05111 -11.85432 -11.38483 -11.19212 -10.57791 -9.82611 -9.67170 -9.00024 -8.16130 -6.25014 -0.10143 0.46050 1.45252 1.46021 1.56673 1.61271 1.99342 2.44301 2.86732 2.96886 3.18216 3.55910 3.72891 4.02592 4.20996 4.27015 4.30241 4.45878 4.59009 4.74096 4.80855 4.89978 4.92037 4.99004 5.10707 5.20750 5.33665 5.36074 5.39256 5.47880 5.59141 5.64541 5.76718 5.97162 6.12945 6.44720 6.55722 6.81317 6.98866 7.45204 8.94940 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.043354 B = 0.004765 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.685457 B = 5875.218847 C = 6327.807021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.144 3.856 3 C -0.171 4.171 4 N -0.673 5.673 5 C 0.207 3.793 6 C -0.531 4.531 7 H 0.065 0.935 8 C 0.002 3.998 9 N -0.934 5.934 10 Si 0.966 3.034 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.262 1.262 14 C -0.073 4.073 15 C -0.078 4.078 16 C -0.113 4.113 17 C -0.067 4.067 18 C -0.043 4.043 19 C 0.284 3.716 20 N -0.468 5.468 21 C -0.066 4.066 22 H 0.076 0.924 23 H 0.039 0.961 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.335 0.665 29 H 0.008 0.992 30 H -0.029 1.029 31 H 0.262 0.738 32 H 0.136 0.864 33 H 0.160 0.840 34 H 0.155 0.845 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.612 -4.962 13.741 15.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.052 3.948 3 C -0.230 4.230 4 N -0.304 5.304 5 C 0.079 3.921 6 C -0.570 4.570 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.574 5.574 10 Si 0.791 3.209 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.186 1.186 14 C -0.073 4.073 15 C -0.097 4.097 16 C -0.131 4.131 17 C -0.087 4.087 18 C -0.047 4.047 19 C -0.030 4.030 20 N -0.144 5.144 21 C -0.087 4.087 22 H 0.095 0.905 23 H 0.058 0.942 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.095 0.905 28 H 0.153 0.847 29 H 0.026 0.974 30 H -0.011 1.011 31 H 0.071 0.929 32 H 0.154 0.846 33 H 0.178 0.822 34 H 0.172 0.828 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.598 -4.722 15.214 16.331 hybrid contribution 0.540 0.723 -1.602 1.839 sum 4.138 -3.999 13.612 14.779 Atomic orbital electron populations 1.21845 0.93525 1.02031 1.01472 1.19783 0.95383 0.91028 0.88569 1.22489 1.01201 0.97272 1.02067 1.60800 1.15450 1.53052 1.01083 1.19257 0.94800 0.91321 0.86697 1.21610 1.31424 1.12434 0.91484 0.91673 1.25859 0.95520 0.95894 1.02323 1.70085 1.38684 1.25281 1.23397 0.85432 0.79059 0.78104 0.78295 1.20204 1.21211 1.18600 1.19619 0.98232 0.96523 0.92949 1.21583 0.94171 0.93440 1.00524 1.21381 1.00171 1.00790 0.90767 1.21417 0.94686 0.93327 0.99249 1.15925 1.04613 0.99322 0.84790 1.25880 0.92225 0.92303 0.92635 1.81254 1.10472 1.09974 1.12700 1.20968 0.98295 0.99250 0.90177 0.90483 0.94169 0.92528 0.92588 0.94004 0.90520 0.84652 0.97438 1.01140 0.92898 0.84611 0.82222 0.82780 0.84659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 8.05 71.98 0.58 -3.55 16 2 C 0.14 4.46 0.79 2.78 0.00 4.46 16 3 C -0.17 -5.20 8.04 71.98 0.58 -4.62 16 4 N -0.67 -25.70 5.08 -477.88 -2.43 -28.13 16 5 C 0.21 10.26 4.65 85.56 0.40 10.66 16 6 C -0.53 -28.79 9.32 25.60 0.24 -28.55 16 7 H 0.07 3.40 7.81 -2.91 -0.02 3.38 16 8 C 0.00 0.11 5.46 84.66 0.46 0.57 16 9 N -0.93 -55.02 13.29 21.45 0.28 -54.73 16 10 Si 0.97 43.08 29.54 68.60 2.03 45.10 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 13 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 14 C -0.07 -1.79 4.77 -19.90 -0.09 -1.89 16 15 C -0.08 -1.74 9.14 22.33 0.20 -1.54 16 16 C -0.11 -1.82 10.03 22.23 0.22 -1.59 16 17 C -0.07 -1.02 9.76 22.54 0.22 -0.80 16 18 C -0.04 -0.83 5.73 -21.36 -0.12 -0.95 16 19 C 0.28 6.32 15.33 88.33 1.35 7.67 16 20 N -0.47 -12.53 18.54 19.00 0.35 -12.18 16 21 C -0.07 -1.41 8.41 22.54 0.19 -1.22 16 22 H 0.08 1.93 7.38 -2.39 -0.02 1.91 16 23 H 0.04 1.48 6.40 -2.39 -0.02 1.47 16 24 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.04 1.51 6.40 -2.39 -0.02 1.50 16 27 H 0.08 1.89 7.38 -2.38 -0.02 1.88 16 28 H 0.34 12.08 7.54 -89.70 -0.68 11.41 16 29 H 0.01 0.41 6.30 -2.39 -0.02 0.40 16 30 H -0.03 -1.55 6.30 -2.39 -0.02 -1.57 16 31 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 32 H 0.14 3.30 6.39 -2.91 -0.02 3.28 16 33 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 34 H 0.15 1.56 8.06 -2.92 -0.02 1.54 16 35 H 0.14 2.64 7.09 -2.91 -0.02 2.62 16 Total: -1.00 -63.11 296.96 4.90 -58.21 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.43 Total: 13.06 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: 4.23 Total: -21.33 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -1.79 Total: -95.04 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -63.11 4.90 -58.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595634823.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.316 kcal (2) G-P(sol) polarization free energy of solvation -63.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.03 seconds