Wall clock time and date at job start Mon Mar 30 2020 06:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.53002 * 109.47179 * 120.00617 * 2 1 3 5 5 C 1.50698 * 109.47265 * 185.00055 * 4 2 1 6 6 H 1.08004 * 119.99892 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99929 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99977 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99769 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47459 * 89.99905 * 9 7 5 11 11 H 1.48499 * 109.47110 * 209.99733 * 9 7 5 12 12 H 1.48498 * 109.47371 * 329.99783 * 9 7 5 13 13 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 14 14 C 1.46899 * 111.00029 * 85.00270 * 13 2 1 15 15 C 1.50703 * 109.47107 * 179.97438 * 14 13 2 16 16 C 1.38384 * 119.92327 * 269.72027 * 15 14 13 17 17 C 1.38343 * 120.30442 * 179.76449 * 16 15 14 18 18 C 1.37964 * 120.14922 * 0.51422 * 17 16 15 19 19 C 1.39611 * 119.84795 * 359.74506 * 18 17 16 20 20 C 1.43202 * 120.15210 * 179.97438 * 19 18 17 21 21 N 7.77798 * 82.50716 * 247.00687 * 2 1 3 22 22 C 1.37924 * 119.92387 * 89.99571 * 15 14 13 23 23 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 25 25 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 26 26 H 1.08995 * 109.46658 * 304.99898 * 4 2 1 27 27 H 1.09003 * 109.46922 * 64.99638 * 4 2 1 28 28 H 0.97008 * 119.99699 * 180.02562 * 8 7 5 29 29 H 1.00908 * 110.99583 * 208.95182 * 13 2 1 30 30 H 1.09002 * 109.47043 * 299.99792 * 14 13 2 31 31 H 1.09001 * 109.47354 * 59.99854 * 14 13 2 32 32 H 1.08000 * 119.84734 * 0.02562 * 16 15 14 33 33 H 1.08005 * 119.92273 * 180.26050 * 17 16 15 34 34 H 1.08002 * 120.07601 * 179.77171 * 18 17 16 35 35 H 1.08001 * 120.07982 * 359.96261 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5419 -0.6151 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2303 -1.1929 2.3582 8 7 3.5762 -1.8364 3.3003 9 14 6.0919 -1.0604 2.4373 10 1 6.4697 0.1622 3.1906 11 1 6.6444 -2.2555 3.1241 12 1 6.6416 -0.9828 1.0600 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2227 -2.3469 15 6 2.5884 -0.5214 -3.5558 16 6 3.9461 -0.5673 -3.8198 17 6 4.4196 -1.2522 -4.9246 18 6 3.5389 -1.8856 -5.7771 19 6 2.1676 -1.8387 -5.5198 20 6 1.2476 -2.4934 -6.4006 21 7 0.5157 -3.0123 -7.0989 22 6 1.6969 -1.1501 -4.3997 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6054 -0.2619 2.1369 27 1 1.7516 -1.7717 1.2054 28 1 4.0605 -2.2426 4.0362 29 1 2.9173 -1.1205 -1.0288 30 1 1.0870 0.6165 -2.5525 31 1 2.7588 1.0463 -2.1182 32 1 4.6395 -0.0698 -3.1580 33 1 5.4808 -1.2876 -5.1225 34 1 3.9096 -2.4168 -6.6413 35 1 0.6373 -1.1103 -4.1946 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695788867.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:45 Heat of formation + Delta-G solvation = 36.748477 kcal Electronic energy + Delta-G solvation = -16395.489854 eV Core-core repulsion = 13778.714998 eV Total energy + Delta-G solvation = -2616.774856 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 4.17 seconds Orbital eigenvalues (eV) -39.62987 -36.90391 -36.24820 -33.25199 -32.05992 -31.34514 -29.31139 -27.43169 -24.92364 -23.88197 -22.95703 -21.56488 -19.49683 -18.26269 -16.42227 -16.35544 -15.81138 -15.04241 -14.76175 -14.40233 -14.13496 -13.93994 -13.54193 -13.17786 -12.91892 -12.74287 -12.34781 -12.03501 -11.85222 -11.68594 -11.51522 -11.29917 -11.25680 -10.82496 -10.65261 -10.56517 -10.25322 -9.33075 -9.12789 -9.02398 -8.85338 -8.43110 -7.73475 -6.06357 -4.10015 0.71473 1.25034 2.56336 2.87260 3.26474 3.33800 3.34626 3.75682 3.81811 4.39304 4.68178 4.77548 4.93449 5.10681 5.23421 5.30721 5.34854 5.50169 5.74923 5.82440 5.92853 5.98778 6.15354 6.19084 6.24404 6.27019 6.48405 6.52528 6.74092 6.89108 6.89931 7.38286 7.45372 7.59030 7.92212 7.98586 8.19037 8.32296 8.96026 9.54421 11.04515 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.023179 B = 0.005267 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.714897 B = 5314.450351 C = 6051.854480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.087 3.913 3 H 0.031 0.969 4 C 0.020 3.980 5 C -0.525 4.525 6 H 0.052 0.948 7 C 0.061 3.939 8 N -0.890 5.890 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.678 5.678 14 C 0.093 3.907 15 C -0.071 4.071 16 C -0.080 4.080 17 C -0.121 4.121 18 C -0.076 4.076 19 C -0.038 4.038 20 C 0.261 3.739 21 N -0.429 5.429 22 C -0.049 4.049 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.036 0.964 26 H 0.022 0.978 27 H 0.026 0.974 28 H 0.261 0.739 29 H 0.357 0.643 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.555 3.748 -14.206 14.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.022 4.022 3 H 0.049 0.951 4 C -0.017 4.017 5 C -0.564 4.564 6 H 0.070 0.930 7 C -0.141 4.141 8 N -0.529 5.529 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.312 5.312 14 C -0.036 4.036 15 C -0.072 4.072 16 C -0.100 4.100 17 C -0.139 4.139 18 C -0.097 4.097 19 C -0.041 4.041 20 C -0.054 4.054 21 N -0.104 5.104 22 C -0.070 4.070 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.055 0.945 26 H 0.040 0.960 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.178 0.822 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.184 2.592 -15.271 15.535 hybrid contribution 2.150 0.719 0.707 2.375 sum 0.966 3.311 -14.565 14.967 Atomic orbital electron populations 1.21806 0.96657 1.01412 0.99538 1.21644 0.93400 0.95927 0.91222 0.95118 1.19285 0.95440 0.96257 0.90765 1.21149 0.92183 1.34648 1.08379 0.93019 1.24986 0.98228 0.95131 0.95707 1.69958 1.35553 1.35489 1.11865 0.86640 0.85894 0.77560 0.78153 1.20765 1.21199 1.19893 1.60649 1.34988 1.31594 1.04004 1.20955 1.00217 0.93458 0.88998 1.19888 0.93012 0.98113 0.96143 1.21433 0.95264 0.96913 0.96366 1.21051 0.99880 0.98044 0.94907 1.21102 0.91008 0.98197 0.99413 1.15983 0.90673 1.02395 0.95045 1.25814 0.93185 0.93249 0.93111 1.81270 1.09260 1.09720 1.10142 1.21059 1.00488 0.93975 0.91504 0.92594 0.93254 0.94480 0.95994 0.95541 0.92904 0.82197 0.90685 0.94441 0.85186 0.85061 0.85372 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.41 37.16 0.35 -1.96 16 2 C 0.09 1.69 2.59 -67.71 -0.18 1.52 16 3 H 0.03 0.61 7.80 -51.93 -0.40 0.20 16 4 C 0.02 0.48 4.57 -27.88 -0.13 0.36 16 5 C -0.53 -13.80 8.12 -34.44 -0.28 -14.08 16 6 H 0.05 1.30 7.49 -52.48 -0.39 0.91 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 9 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 13 N -0.68 -11.91 6.30 -107.99 -0.68 -12.59 16 14 C 0.09 1.28 5.61 -4.98 -0.03 1.26 16 15 C -0.07 -0.86 5.39 -104.68 -0.56 -1.43 16 16 C -0.08 -0.89 9.69 -39.49 -0.38 -1.27 16 17 C -0.12 -1.12 10.03 -39.64 -0.40 -1.52 16 18 C -0.08 -0.72 9.76 -39.17 -0.38 -1.10 16 19 C -0.04 -0.41 5.73 -106.93 -0.61 -1.02 16 20 C 0.26 3.23 15.33 -22.44 -0.34 2.89 16 21 N -0.43 -6.16 18.54 41.87 0.78 -5.38 16 22 C -0.05 -0.57 9.41 -39.17 -0.37 -0.94 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.04 0.54 7.45 -51.92 -0.39 0.16 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.36 6.89 7.20 -39.29 -0.28 6.61 16 30 H 0.07 0.97 7.38 -51.93 -0.38 0.58 16 31 H 0.04 0.52 7.99 -51.93 -0.42 0.10 16 32 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 308.51 15.07 4.65 4.65 Total: -1.00 -29.13 308.51 -7.73 -36.86 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -4.78 Total: 1.65 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -3.41 Total: -15.71 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.83 Total: -43.08 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.13 -7.73 -36.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695788867.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.612 kcal (2) G-P(sol) polarization free energy of solvation -29.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.17 seconds