Wall clock time and date at job start Mon Mar 30 2020 06:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.53002 * 109.47179 * 120.00617 * 2 1 3 5 5 C 1.50698 * 109.47265 * 185.00055 * 4 2 1 6 6 H 1.08004 * 119.99892 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99929 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99977 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99769 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47459 * 89.99905 * 9 7 5 11 11 H 1.48499 * 109.47110 * 209.99733 * 9 7 5 12 12 H 1.48498 * 109.47371 * 329.99783 * 9 7 5 13 13 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 14 14 C 1.46899 * 111.00029 * 85.00270 * 13 2 1 15 15 C 1.50703 * 109.47107 * 179.97438 * 14 13 2 16 16 C 1.38384 * 119.92327 * 269.72027 * 15 14 13 17 17 C 1.38343 * 120.30442 * 179.76449 * 16 15 14 18 18 C 1.37964 * 120.14922 * 0.51422 * 17 16 15 19 19 C 1.39611 * 119.84795 * 359.74506 * 18 17 16 20 20 C 1.43202 * 120.15210 * 179.97438 * 19 18 17 21 21 N 7.77798 * 82.50716 * 247.00687 * 2 1 3 22 22 C 1.37924 * 119.92387 * 89.99571 * 15 14 13 23 23 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 25 25 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 26 26 H 1.08995 * 109.46658 * 304.99898 * 4 2 1 27 27 H 1.09003 * 109.46922 * 64.99638 * 4 2 1 28 28 H 0.97008 * 119.99699 * 180.02562 * 8 7 5 29 29 H 1.00908 * 110.99583 * 208.95182 * 13 2 1 30 30 H 1.09002 * 109.47043 * 299.99792 * 14 13 2 31 31 H 1.09001 * 109.47354 * 59.99854 * 14 13 2 32 32 H 1.08000 * 119.84734 * 0.02562 * 16 15 14 33 33 H 1.08005 * 119.92273 * 180.26050 * 17 16 15 34 34 H 1.08002 * 120.07601 * 179.77171 * 18 17 16 35 35 H 1.08001 * 120.07982 * 359.96261 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5419 -0.6151 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2303 -1.1929 2.3582 8 7 3.5762 -1.8364 3.3003 9 14 6.0919 -1.0604 2.4373 10 1 6.4697 0.1622 3.1906 11 1 6.6444 -2.2555 3.1241 12 1 6.6416 -0.9828 1.0600 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2227 -2.3469 15 6 2.5884 -0.5214 -3.5558 16 6 3.9461 -0.5673 -3.8198 17 6 4.4196 -1.2522 -4.9246 18 6 3.5389 -1.8856 -5.7771 19 6 2.1676 -1.8387 -5.5198 20 6 1.2476 -2.4934 -6.4006 21 7 0.5157 -3.0123 -7.0989 22 6 1.6969 -1.1501 -4.3997 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6054 -0.2619 2.1369 27 1 1.7516 -1.7717 1.2054 28 1 4.0605 -2.2426 4.0362 29 1 2.9173 -1.1205 -1.0288 30 1 1.0870 0.6165 -2.5525 31 1 2.7588 1.0463 -2.1182 32 1 4.6395 -0.0698 -3.1580 33 1 5.4808 -1.2876 -5.1225 34 1 3.9096 -2.4168 -6.6413 35 1 0.6373 -1.1103 -4.1946 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695788867.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:44 Heat of formation + Delta-G solvation = 20.195372 kcal Electronic energy + Delta-G solvation = -16396.207651 eV Core-core repulsion = 13778.714998 eV Total energy + Delta-G solvation = -2617.492653 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.50266 -38.23424 -37.39607 -34.94988 -33.51153 -32.18256 -30.59266 -29.23337 -26.11676 -24.86537 -24.67635 -22.48002 -21.08342 -19.20986 -18.45915 -17.21529 -16.90432 -16.51558 -16.20423 -15.80324 -15.17865 -14.97418 -14.77374 -14.26263 -14.06351 -13.90979 -13.56426 -13.41903 -13.36306 -13.12349 -12.96871 -12.67655 -12.52689 -12.34472 -12.25490 -12.05158 -11.73493 -11.19010 -10.97363 -10.53771 -9.85506 -9.76232 -9.11405 -8.14954 -6.25598 -0.14228 0.43356 1.44517 1.44759 1.55203 1.59562 1.94979 2.44430 2.85008 2.92834 3.18369 3.63538 3.91133 4.00560 4.21005 4.32106 4.39751 4.44165 4.61522 4.68025 4.77026 4.83148 4.94581 5.06351 5.10077 5.26641 5.36469 5.39646 5.44665 5.53062 5.59230 5.65821 5.88522 5.93460 6.24754 6.43300 6.44603 6.69373 6.90359 7.43613 8.96781 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.023179 B = 0.005267 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.714897 B = 5314.450351 C = 6051.854480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.096 3.904 3 H 0.031 0.969 4 C 0.025 3.975 5 C -0.531 4.531 6 H 0.063 0.937 7 C 0.003 3.997 8 N -0.933 5.933 9 Si 0.960 3.040 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.256 1.256 13 N -0.682 5.682 14 C 0.096 3.904 15 C -0.086 4.086 16 C -0.085 4.085 17 C -0.115 4.115 18 C -0.065 4.065 19 C -0.046 4.046 20 C 0.282 3.718 21 N -0.469 5.469 22 C -0.053 4.053 23 H 0.046 0.954 24 H 0.050 0.950 25 H 0.064 0.936 26 H -0.007 1.007 27 H -0.005 1.005 28 H 0.261 0.739 29 H 0.345 0.655 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.134 0.866 33 H 0.161 0.839 34 H 0.153 0.847 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 4.457 -15.941 16.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.013 4.013 3 H 0.049 0.951 4 C -0.012 4.012 5 C -0.569 4.569 6 H 0.081 0.919 7 C -0.195 4.195 8 N -0.574 5.574 9 Si 0.785 3.215 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.180 1.180 13 N -0.315 5.315 14 C -0.032 4.032 15 C -0.087 4.087 16 C -0.104 4.104 17 C -0.133 4.133 18 C -0.086 4.086 19 C -0.050 4.050 20 C -0.032 4.032 21 N -0.145 5.145 22 C -0.074 4.074 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.011 0.989 27 H 0.013 0.987 28 H 0.070 0.930 29 H 0.164 0.836 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.152 0.848 33 H 0.178 0.822 34 H 0.171 0.829 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.466 3.320 -17.034 17.361 hybrid contribution 1.635 0.510 1.229 2.108 sum 2.101 3.830 -15.805 16.398 Atomic orbital electron populations 1.21730 0.94712 1.01303 1.01008 1.21426 0.94951 0.95038 0.89916 0.95125 1.19154 0.95034 0.94662 0.92343 1.21544 0.93129 1.33920 1.08322 0.91855 1.25911 1.03359 0.94843 0.95403 1.70108 1.37600 1.36910 1.12746 0.85523 0.79784 0.77290 0.78918 1.20343 1.21446 1.17954 1.60655 1.34224 1.32479 1.04147 1.20972 1.01103 0.93007 0.88159 1.19737 0.93768 0.99277 0.95914 1.21614 0.94803 0.96955 0.97032 1.21354 1.01340 0.96802 0.93816 1.21423 0.90125 0.97182 0.99835 1.16029 0.91232 1.02879 0.94855 1.25973 0.92531 0.92312 0.92393 1.81291 1.10374 1.11238 1.11562 1.21074 1.00606 0.94004 0.91683 0.93491 0.93089 0.91689 0.98887 0.98679 0.92990 0.83550 0.89645 0.94185 0.84769 0.82173 0.82899 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 9.41 71.98 0.68 -3.62 16 2 C 0.10 3.72 2.59 44.91 0.12 3.84 16 3 H 0.03 1.18 7.80 -2.39 -0.02 1.17 16 4 C 0.03 1.28 4.57 29.85 0.14 1.42 16 5 C -0.53 -28.05 8.12 25.60 0.21 -27.84 16 6 H 0.06 3.13 7.49 -2.91 -0.02 3.10 16 7 C 0.00 0.15 5.46 84.65 0.46 0.61 16 8 N -0.93 -55.44 13.29 21.45 0.28 -55.16 16 9 Si 0.96 42.08 29.54 68.60 2.03 44.11 16 10 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 11 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 13 N -0.68 -23.49 6.30 -495.57 -3.12 -26.61 16 14 C 0.10 2.50 5.61 85.56 0.48 2.98 16 15 C -0.09 -1.94 5.39 -19.90 -0.11 -2.05 16 16 C -0.08 -1.65 9.69 22.33 0.22 -1.43 16 17 C -0.12 -1.74 10.03 22.23 0.22 -1.51 16 18 C -0.07 -1.01 9.76 22.54 0.22 -0.79 16 19 C -0.05 -0.92 5.73 -21.36 -0.12 -1.04 16 20 C 0.28 6.59 15.33 88.32 1.35 7.95 16 21 N -0.47 -13.12 18.54 19.02 0.35 -12.77 16 22 C -0.05 -1.13 9.41 22.54 0.21 -0.91 16 23 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 24 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.06 1.79 7.45 -2.38 -0.02 1.77 16 26 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 27 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 28 H 0.26 14.70 8.31 -92.70 -0.77 13.93 16 29 H 0.34 13.19 7.20 -89.69 -0.65 12.54 16 30 H 0.09 2.03 7.38 -2.39 -0.02 2.01 16 31 H 0.04 1.03 7.99 -2.39 -0.02 1.01 16 32 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 33 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 34 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 35 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -63.46 308.51 4.06 -59.40 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.44 Total: 13.43 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: 4.08 Total: -22.40 kcal Atomic # 7 Polarization: -92.05 SS G_CDS: -2.48 Total: -94.54 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -63.46 4.06 -59.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695788867.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.595 kcal (2) G-P(sol) polarization free energy of solvation -63.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds