Wall clock time and date at job start Mon Mar 30 2020 06:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46796 * 2 1 4 4 C 1.53002 * 109.47004 * 119.99786 * 2 1 3 5 5 C 1.50703 * 109.46833 * 184.99926 * 4 2 1 6 6 H 1.08003 * 120.00229 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99898 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99915 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99882 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47308 * 89.99793 * 9 7 5 11 11 H 1.48507 * 109.46506 * 210.00032 * 9 7 5 12 12 H 1.48494 * 109.46885 * 329.99448 * 9 7 5 13 13 N 1.46897 * 109.47181 * 240.00258 * 2 1 3 14 14 C 1.46901 * 111.00142 * 84.99770 * 13 2 1 15 15 C 1.50696 * 109.46885 * 179.97438 * 14 13 2 16 16 C 1.38365 * 119.84509 * 90.00234 * 15 14 13 17 17 C 1.37947 * 120.14940 * 179.97438 * 16 15 14 18 18 C 1.39629 * 119.84839 * 359.97438 * 17 16 15 19 19 C 1.43205 * 120.15217 * 180.02562 * 18 17 16 20 20 N 8.91693 * 108.62759 * 248.05882 * 2 1 3 21 21 C 1.39630 * 119.69955 * 0.27680 * 18 17 16 22 22 C 1.37952 * 119.84588 * 359.42138 * 21 18 17 23 23 H 1.08991 * 109.47111 * 60.00202 * 1 2 3 24 24 H 1.08998 * 109.46796 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47506 * 299.99590 * 1 2 3 26 26 H 1.08997 * 109.47704 * 305.00107 * 4 2 1 27 27 H 1.09005 * 109.47040 * 65.00499 * 4 2 1 28 28 H 0.96998 * 119.99528 * 180.02562 * 8 7 5 29 29 H 1.00904 * 110.99744 * 208.95649 * 13 2 1 30 30 H 1.09000 * 109.46794 * 60.00162 * 14 13 2 31 31 H 1.08992 * 109.47035 * 299.99855 * 14 13 2 32 32 H 1.07993 * 119.92724 * 359.97438 * 16 15 14 33 33 H 1.08003 * 120.07687 * 179.97438 * 17 16 15 34 34 H 1.07999 * 120.08232 * 179.69881 * 21 18 17 35 35 H 1.08002 * 119.92853 * 180.27179 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3127 6 1 4.0789 -0.0854 0.5396 7 6 4.2305 -1.1935 2.3578 8 7 3.5765 -1.8377 3.2996 9 14 6.0921 -1.0610 2.4368 10 1 6.4699 0.1611 3.1910 11 1 6.6446 -2.2567 3.1227 12 1 6.6416 -0.9824 1.0595 13 7 2.0197 -0.6924 -1.1994 14 6 2.0824 0.2227 -2.3469 15 6 2.5885 -0.5214 -3.5557 16 6 1.6927 -1.1517 -4.4012 17 6 2.1490 -1.8342 -5.5097 18 6 3.5183 -1.8876 -5.7780 19 6 3.9991 -2.5938 -6.9273 20 7 4.3782 -3.1573 -7.8378 21 6 4.4170 -1.2538 -4.9176 22 6 3.9466 -0.5695 -3.8160 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6054 -0.2618 2.1370 27 1 1.7517 -1.7715 1.2056 28 1 4.0609 -2.2444 4.0350 29 1 2.9173 -1.1205 -1.0287 30 1 2.7588 1.0462 -2.1182 31 1 1.0871 0.6163 -2.5525 32 1 0.6339 -1.1092 -4.1928 33 1 1.4488 -2.3260 -6.1687 34 1 5.4777 -1.2953 -5.1165 35 1 4.6402 -0.0751 -3.1521 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695793050.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:57 Heat of formation + Delta-G solvation = 36.614012 kcal Electronic energy + Delta-G solvation = -16337.839806 eV Core-core repulsion = 13721.059119 eV Total energy + Delta-G solvation = -2616.780687 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.62390 -36.99495 -36.23605 -33.24974 -32.08931 -31.15991 -29.51264 -27.44181 -25.45501 -23.09086 -22.82806 -21.66020 -19.49925 -18.98857 -16.40810 -15.97640 -15.65200 -14.82523 -14.74245 -14.52557 -14.22362 -14.00700 -13.59116 -13.31062 -12.96503 -12.75797 -12.34820 -12.10554 -11.88106 -11.71622 -11.49107 -11.26550 -11.12572 -10.87888 -10.66603 -10.56996 -10.26251 -9.33215 -9.13255 -9.09557 -8.80681 -8.43450 -7.75501 -6.06917 -4.10557 0.68689 1.28433 2.54239 2.85523 3.26542 3.34047 3.34863 3.75988 3.80834 4.39161 4.73286 4.76253 4.78357 5.10598 5.29539 5.31286 5.34753 5.61689 5.65449 5.85579 5.92731 5.97214 6.12804 6.18415 6.19977 6.24323 6.46931 6.57154 6.75081 6.87635 6.88519 7.35544 7.43764 7.58276 7.91394 7.96977 8.16945 8.31515 8.95487 9.54018 11.03935 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.021017 B = 0.005301 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.918263 B = 5280.319108 C = 6277.774531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.087 3.913 3 H 0.031 0.969 4 C 0.020 3.980 5 C -0.526 4.526 6 H 0.052 0.948 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.677 5.677 14 C 0.088 3.912 15 C -0.037 4.037 16 C -0.101 4.101 17 C -0.072 4.072 18 C -0.043 4.043 19 C 0.262 3.738 20 N -0.431 5.431 21 C -0.069 4.069 22 C -0.114 4.114 23 H 0.036 0.964 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.022 0.978 27 H 0.026 0.974 28 H 0.261 0.739 29 H 0.357 0.643 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.155 3.900 -13.436 14.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.022 4.022 3 H 0.049 0.951 4 C -0.017 4.017 5 C -0.564 4.564 6 H 0.070 0.930 7 C -0.140 4.140 8 N -0.529 5.529 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.311 5.311 14 C -0.041 4.041 15 C -0.038 4.038 16 C -0.120 4.120 17 C -0.092 4.092 18 C -0.047 4.047 19 C -0.053 4.053 20 N -0.106 5.106 21 C -0.089 4.089 22 C -0.133 4.133 23 H 0.055 0.945 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.040 0.960 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.178 0.822 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.159 2.675 -14.831 15.398 hybrid contribution 1.742 0.742 0.785 2.050 sum -1.417 3.417 -14.046 14.525 Atomic orbital electron populations 1.21799 0.96619 1.01409 0.99541 1.21647 0.93420 0.95932 0.91194 0.95121 1.19285 0.95436 0.96254 0.90755 1.21153 0.92186 1.34634 1.08431 0.93021 1.24984 0.98219 0.95114 0.95702 1.69956 1.35558 1.35447 1.11899 0.86647 0.85899 0.77574 0.78179 1.20746 1.21190 1.19890 1.60650 1.35006 1.31489 1.03959 1.21026 1.00299 0.93588 0.89190 1.20261 0.93150 0.95236 0.95199 1.20990 1.00425 0.96960 0.93617 1.21134 0.93184 0.97612 0.97284 1.15978 0.94045 1.02441 0.92234 1.25811 0.93393 0.93163 0.92949 1.81229 1.08132 1.09947 1.11321 1.21121 0.99203 0.95184 0.93404 1.21106 0.95469 0.99623 0.97096 0.94464 0.92581 0.93264 0.95986 0.95536 0.92897 0.82167 0.94446 0.90554 0.84798 0.85255 0.85212 0.84890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.41 37.16 0.35 -1.89 16 2 C 0.09 1.67 2.59 -67.71 -0.18 1.49 16 3 H 0.03 0.60 7.80 -51.93 -0.40 0.19 16 4 C 0.02 0.48 4.57 -27.88 -0.13 0.36 16 5 C -0.53 -13.77 8.12 -34.44 -0.28 -14.05 16 6 H 0.05 1.30 7.49 -52.48 -0.39 0.90 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 9 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.68 -11.66 6.30 -108.00 -0.68 -12.34 16 14 C 0.09 1.19 5.60 -4.98 -0.03 1.16 16 15 C -0.04 -0.44 5.40 -104.53 -0.56 -1.01 16 16 C -0.10 -1.06 9.68 -39.64 -0.38 -1.44 16 17 C -0.07 -0.70 9.76 -39.17 -0.38 -1.08 16 18 C -0.04 -0.46 5.73 -106.93 -0.61 -1.07 16 19 C 0.26 3.13 15.33 -22.47 -0.34 2.79 16 20 N -0.43 -6.04 18.54 41.83 0.78 -5.26 16 21 C -0.07 -0.71 9.76 -39.17 -0.38 -1.09 16 22 C -0.11 -1.29 9.68 -39.64 -0.38 -1.67 16 23 H 0.04 0.53 7.45 -51.93 -0.39 0.14 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.36 6.84 7.20 -39.29 -0.28 6.55 16 30 H 0.04 0.51 7.99 -51.93 -0.42 0.10 16 31 H 0.08 0.94 7.38 -51.93 -0.38 0.56 16 32 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 308.49 15.07 4.65 4.65 Total: -1.00 -28.97 308.49 -7.74 -36.71 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -4.78 Total: 1.51 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -3.41 Total: -15.92 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.83 Total: -42.64 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.97 -7.74 -36.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695793050.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.319 kcal (2) G-P(sol) polarization free energy of solvation -28.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds