Wall clock time and date at job start Mon Mar 30 2020 06:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47030 * 2 1 4 4 C 1.53005 * 109.47206 * 119.99882 * 2 1 3 5 5 C 1.50697 * 109.47128 * 184.99912 * 4 2 1 6 6 H 1.08004 * 119.99854 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99947 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00368 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00020 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47112 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47312 * 119.99746 * 9 7 5 12 12 H 1.48504 * 109.46775 * 239.99728 * 9 7 5 13 13 N 1.46493 * 109.47175 * 240.00122 * 2 1 3 14 14 C 1.46501 * 120.00357 * 295.42880 * 13 2 1 15 15 C 1.39709 * 120.00168 * 115.42695 * 13 2 1 16 16 C 1.39034 * 120.00002 * 185.81238 * 15 13 2 17 17 C 1.38211 * 120.22448 * 180.02562 * 16 15 13 18 18 C 1.38010 * 120.23974 * 359.97438 * 17 16 15 19 19 C 1.39639 * 119.99327 * 359.97438 * 18 17 16 20 20 C 1.43207 * 120.11180 * 180.02562 * 19 18 17 21 21 N 5.92076 * 120.03609 * 330.83463 * 2 1 3 22 22 C 1.38631 * 119.99831 * 5.53365 * 15 13 2 23 23 H 1.09009 * 109.47107 * 299.99618 * 1 2 3 24 24 H 1.08998 * 109.47218 * 59.99467 * 1 2 3 25 25 H 1.08997 * 109.47030 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47292 * 305.00152 * 4 2 1 27 27 H 1.09001 * 109.46376 * 65.00316 * 4 2 1 28 28 H 0.96998 * 120.00602 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47262 * 89.99377 * 14 13 2 30 30 H 1.08997 * 109.47416 * 210.00085 * 14 13 2 31 31 H 1.08998 * 109.46647 * 329.99699 * 14 13 2 32 32 H 1.07994 * 119.88505 * 359.97438 * 16 15 13 33 33 H 1.08006 * 119.87460 * 180.02562 * 17 16 15 34 34 H 1.07997 * 120.00177 * 179.97438 * 18 17 16 35 35 H 1.08003 * 120.11389 * 359.97438 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0862 0.5391 7 6 4.2304 -1.1935 2.3578 8 7 3.5765 -1.8378 3.2995 9 14 6.0921 -1.0611 2.4368 10 1 6.5837 -0.2908 1.2663 11 1 6.4862 -0.3658 3.6884 12 1 6.6863 -2.4219 2.4183 13 7 2.0183 -0.6905 -1.1961 14 6 1.7489 -2.1190 -1.3787 15 6 2.7410 0.0130 -2.1629 16 6 3.1000 -0.6102 -3.3527 17 6 3.8154 0.0813 -4.3120 18 6 4.1778 1.3953 -4.0960 19 6 3.8212 2.0310 -2.9049 20 6 4.1955 3.3946 -2.6783 21 7 4.4936 4.4758 -2.4979 22 6 3.0950 1.3344 -1.9382 23 1 -0.3634 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6054 -0.2618 2.1370 27 1 1.7517 -1.7715 1.2055 28 1 4.0608 -2.2445 4.0349 29 1 0.8070 -2.2458 -1.9124 30 1 2.5567 -2.5704 -1.9547 31 1 1.6826 -2.6035 -0.4046 32 1 2.8198 -1.6384 -3.5275 33 1 4.0910 -0.4083 -5.2345 34 1 4.7371 1.9319 -4.8481 35 1 2.8127 1.8219 -1.0167 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695810117.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:07 Heat of formation + Delta-G solvation = 57.093443 kcal Electronic energy + Delta-G solvation = -17157.251392 eV Core-core repulsion = 14541.358760 eV Total energy + Delta-G solvation = -2615.892633 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.54439 -37.11222 -35.92483 -33.13182 -31.73870 -30.89575 -29.27132 -27.48408 -25.86839 -23.37740 -23.13136 -21.96383 -19.23873 -18.36223 -16.49221 -16.23377 -15.44181 -15.19555 -14.64801 -14.14084 -13.89141 -13.69292 -13.57144 -13.00860 -12.82078 -12.50991 -12.29833 -12.01389 -11.85741 -11.74942 -11.60648 -11.32805 -11.21675 -10.78557 -10.68933 -10.56776 -10.10311 -9.77339 -9.27386 -9.07213 -8.69307 -8.42530 -6.78378 -6.06024 -4.07148 1.10348 1.82853 2.85732 3.25586 3.28232 3.36937 3.42657 3.64067 4.15699 4.24213 4.42947 5.07086 5.27890 5.31224 5.44716 5.57727 5.66343 5.70504 5.80407 5.89445 5.92378 5.99468 6.14512 6.26356 6.36745 6.44400 6.56430 6.62279 6.68483 6.77920 6.97963 7.40401 7.51495 7.67565 7.85160 7.95270 8.05035 8.33125 8.98655 9.57554 11.05068 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.016770 B = 0.008154 C = 0.006871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.274463 B = 3433.210132 C = 4073.868569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.140 3.860 3 H 0.079 0.921 4 C 0.011 3.989 5 C -0.509 4.509 6 H 0.057 0.943 7 C 0.058 3.942 8 N -0.897 5.897 9 Si 0.885 3.115 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.596 5.596 14 C 0.094 3.906 15 C 0.239 3.761 16 C -0.183 4.183 17 C -0.073 4.073 18 C -0.151 4.151 19 C 0.012 3.988 20 C 0.266 3.734 21 N -0.435 5.435 22 C -0.150 4.150 23 H 0.061 0.939 24 H 0.044 0.956 25 H 0.052 0.948 26 H 0.027 0.973 27 H 0.023 0.977 28 H 0.259 0.741 29 H 0.038 0.962 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.984 0.070 -12.757 13.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.037 3.963 3 H 0.097 0.903 4 C -0.026 4.026 5 C -0.547 4.547 6 H 0.075 0.925 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.714 3.286 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.301 5.301 14 C -0.049 4.049 15 C 0.132 3.868 16 C -0.206 4.206 17 C -0.092 4.092 18 C -0.174 4.174 19 C 0.008 3.992 20 C -0.049 4.049 21 N -0.110 5.110 22 C -0.175 4.175 23 H 0.080 0.920 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.630 1.526 -12.127 12.750 hybrid contribution 1.034 -0.533 0.249 1.190 sum -2.596 0.993 -11.879 12.199 Atomic orbital electron populations 1.22191 0.97026 1.01613 1.00954 1.21444 0.91619 0.97177 0.86077 0.90260 1.19515 0.96461 0.95941 0.90677 1.21164 0.91686 1.34069 1.07808 0.92470 1.24963 0.98160 0.95390 0.95743 1.69954 1.35369 1.36189 1.12120 0.86625 0.86164 0.77784 0.78070 1.19606 1.21084 1.21093 1.46592 1.55755 1.08123 1.19623 1.21568 0.99102 0.81442 1.02760 1.17670 0.90027 0.90553 0.88518 1.20857 1.05231 1.00779 0.93776 1.20675 0.96567 0.93520 0.98408 1.20691 1.04623 0.95630 0.96446 1.15698 1.01510 0.85673 0.96279 1.25878 0.93160 0.92872 0.92995 1.81184 1.09306 1.12184 1.08346 1.20758 1.02913 0.94132 0.99742 0.91990 0.93652 0.92846 0.95508 0.95864 0.93090 0.94378 0.92081 0.90146 0.85702 0.85783 0.86176 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.26 37.16 0.34 -2.10 16 2 C 0.14 2.56 2.53 -67.93 -0.17 2.39 16 3 H 0.08 1.48 5.31 -51.93 -0.28 1.20 16 4 C 0.01 0.27 4.33 -27.88 -0.12 0.14 16 5 C -0.51 -13.40 8.84 -34.44 -0.30 -13.70 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -25.85 13.29 55.43 0.74 -25.11 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.60 -10.07 2.61 -172.04 -0.45 -10.52 16 14 C 0.09 1.41 9.29 59.85 0.56 1.96 16 15 C 0.24 3.82 6.53 -83.83 -0.55 3.27 16 16 C -0.18 -2.45 9.16 -39.30 -0.36 -2.81 16 17 C -0.07 -0.85 10.02 -39.67 -0.40 -1.25 16 18 C -0.15 -1.89 9.75 -39.14 -0.38 -2.27 16 19 C 0.01 0.18 5.73 -106.96 -0.61 -0.43 16 20 C 0.27 4.22 15.33 -22.47 -0.34 3.88 16 21 N -0.43 -7.59 18.54 41.84 0.78 -6.82 16 22 C -0.15 -2.43 9.02 -38.95 -0.35 -2.78 16 23 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.79 7.79 -51.93 -0.40 0.39 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.02 0.57 6.31 -51.93 -0.33 0.24 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.83 6.45 -51.93 -0.34 0.50 16 31 H 0.08 1.36 6.10 -51.93 -0.32 1.04 16 32 H 0.13 1.46 6.29 -52.49 -0.33 1.13 16 33 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 34 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.13 2.26 5.73 -52.48 -0.30 1.96 16 LS Contribution 299.25 15.07 4.51 4.51 Total: -1.00 -29.31 299.25 -6.61 -35.92 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -4.37 Total: -2.26 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -2.79 Total: -12.19 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: 1.06 Total: -42.45 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.31 -6.61 -35.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695810117.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.011 kcal (2) G-P(sol) polarization free energy of solvation -29.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds