Wall clock time and date at job start Mon Mar 30 2020 06:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47030 * 2 1 4 4 C 1.53005 * 109.47206 * 119.99882 * 2 1 3 5 5 C 1.50697 * 109.47128 * 184.99912 * 4 2 1 6 6 H 1.08004 * 119.99854 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99947 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00368 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00020 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47112 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47312 * 119.99746 * 9 7 5 12 12 H 1.48504 * 109.46775 * 239.99728 * 9 7 5 13 13 N 1.46493 * 109.47175 * 240.00122 * 2 1 3 14 14 C 1.46501 * 120.00357 * 295.42880 * 13 2 1 15 15 C 1.39709 * 120.00168 * 115.42695 * 13 2 1 16 16 C 1.39034 * 120.00002 * 185.81238 * 15 13 2 17 17 C 1.38211 * 120.22448 * 180.02562 * 16 15 13 18 18 C 1.38010 * 120.23974 * 359.97438 * 17 16 15 19 19 C 1.39639 * 119.99327 * 359.97438 * 18 17 16 20 20 C 1.43207 * 120.11180 * 180.02562 * 19 18 17 21 21 N 5.92076 * 120.03609 * 330.83463 * 2 1 3 22 22 C 1.38631 * 119.99831 * 5.53365 * 15 13 2 23 23 H 1.09009 * 109.47107 * 299.99618 * 1 2 3 24 24 H 1.08998 * 109.47218 * 59.99467 * 1 2 3 25 25 H 1.08997 * 109.47030 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47292 * 305.00152 * 4 2 1 27 27 H 1.09001 * 109.46376 * 65.00316 * 4 2 1 28 28 H 0.96998 * 120.00602 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47262 * 89.99377 * 14 13 2 30 30 H 1.08997 * 109.47416 * 210.00085 * 14 13 2 31 31 H 1.08998 * 109.46647 * 329.99699 * 14 13 2 32 32 H 1.07994 * 119.88505 * 359.97438 * 16 15 13 33 33 H 1.08006 * 119.87460 * 180.02562 * 17 16 15 34 34 H 1.07997 * 120.00177 * 179.97438 * 18 17 16 35 35 H 1.08003 * 120.11389 * 359.97438 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0862 0.5391 7 6 4.2304 -1.1935 2.3578 8 7 3.5765 -1.8378 3.2995 9 14 6.0921 -1.0611 2.4368 10 1 6.5837 -0.2908 1.2663 11 1 6.4862 -0.3658 3.6884 12 1 6.6863 -2.4219 2.4183 13 7 2.0183 -0.6905 -1.1961 14 6 1.7489 -2.1190 -1.3787 15 6 2.7410 0.0130 -2.1629 16 6 3.1000 -0.6102 -3.3527 17 6 3.8154 0.0813 -4.3120 18 6 4.1778 1.3953 -4.0960 19 6 3.8212 2.0310 -2.9049 20 6 4.1955 3.3946 -2.6783 21 7 4.4936 4.4758 -2.4979 22 6 3.0950 1.3344 -1.9382 23 1 -0.3634 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6054 -0.2618 2.1370 27 1 1.7517 -1.7715 1.2055 28 1 4.0608 -2.2445 4.0349 29 1 0.8070 -2.2458 -1.9124 30 1 2.5567 -2.5704 -1.9547 31 1 1.6826 -2.6035 -0.4046 32 1 2.8198 -1.6384 -3.5275 33 1 4.0910 -0.4083 -5.2345 34 1 4.7371 1.9319 -4.8481 35 1 2.8127 1.8219 -1.0167 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695810117.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:05 Heat of formation + Delta-G solvation = 42.168012 kcal Electronic energy + Delta-G solvation = -17157.898607 eV Core-core repulsion = 14541.358760 eV Total energy + Delta-G solvation = -2616.539848 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.70289 -38.41666 -37.21731 -34.98711 -33.24263 -32.02034 -30.45205 -29.28499 -27.03810 -25.14404 -24.32729 -23.24292 -20.58712 -19.58113 -18.42811 -17.55627 -16.76904 -16.47761 -16.28252 -15.46755 -15.11581 -14.95207 -14.85918 -14.41244 -14.18760 -13.85815 -13.76761 -13.49472 -13.27092 -13.11210 -12.99085 -12.80527 -12.56623 -12.41431 -12.30651 -12.13713 -11.62411 -11.29409 -11.09751 -10.54549 -10.52708 -9.78098 -8.18482 -7.98894 -6.23429 -0.02797 0.76670 1.34341 1.37964 1.48647 1.60509 2.05832 2.39453 2.42297 2.96777 3.12295 3.17552 3.95451 4.20462 4.32498 4.41637 4.49698 4.51427 4.62242 4.67324 4.80784 4.86800 4.99284 5.03213 5.11119 5.17273 5.31769 5.36888 5.48923 5.52835 5.62705 5.66190 5.83807 5.98394 6.28153 6.43798 6.59564 6.80914 6.91115 7.43950 8.93699 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.016770 B = 0.008154 C = 0.006871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.274463 B = 3433.210132 C = 4073.868569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.149 3.851 3 H 0.072 0.928 4 C 0.018 3.982 5 C -0.509 4.509 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.943 3.057 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.278 1.278 13 N -0.608 5.608 14 C 0.096 3.904 15 C 0.215 3.785 16 C -0.175 4.175 17 C -0.063 4.063 18 C -0.136 4.136 19 C 0.000 4.000 20 C 0.281 3.719 21 N -0.470 5.470 22 C -0.171 4.171 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.056 0.944 26 H -0.001 1.001 27 H 0.008 0.992 28 H 0.260 0.740 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.146 0.854 33 H 0.166 0.834 34 H 0.147 0.853 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.396 -0.497 -15.522 15.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.045 3.955 3 H 0.089 0.911 4 C -0.020 4.020 5 C -0.547 4.547 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.573 5.573 9 Si 0.770 3.230 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.204 1.204 13 N -0.315 5.315 14 C -0.047 4.047 15 C 0.111 3.889 16 C -0.198 4.198 17 C -0.081 4.081 18 C -0.159 4.159 19 C -0.004 4.004 20 C -0.033 4.033 21 N -0.146 5.146 22 C -0.196 4.196 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.017 0.983 27 H 0.026 0.974 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.163 0.837 33 H 0.184 0.816 34 H 0.165 0.835 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.032 0.966 -14.922 15.257 hybrid contribution 0.865 -0.364 1.023 1.389 sum -2.167 0.603 -13.899 14.079 Atomic orbital electron populations 1.22072 0.94632 1.02163 1.01877 1.21102 0.93479 0.96081 0.84862 0.91051 1.19390 0.94907 0.95375 0.92340 1.21466 0.93338 1.32816 1.07115 0.92980 1.25701 1.02134 0.95525 0.95759 1.70059 1.36856 1.37491 1.12846 0.85716 0.81568 0.77862 0.77861 1.19413 1.21017 1.20422 1.46525 1.56855 1.08786 1.19383 1.21615 1.01035 0.80315 1.01688 1.17904 0.90915 0.90617 0.89508 1.21202 1.04134 1.01711 0.92754 1.21136 0.94806 0.92918 0.99258 1.21092 1.03136 0.96069 0.95584 1.15797 1.02308 0.85085 0.97241 1.26099 0.92216 0.92940 0.92018 1.81190 1.10711 1.13212 1.09455 1.20681 1.04429 0.94819 0.99715 0.91978 0.91751 0.92446 0.98276 0.97398 0.93086 0.91673 0.90724 0.92983 0.83660 0.81629 0.83516 0.86743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 9.26 71.98 0.67 -3.84 16 2 C 0.15 5.53 2.53 44.99 0.11 5.64 16 3 H 0.07 2.75 5.31 -2.39 -0.01 2.74 16 4 C 0.02 0.84 4.33 29.85 0.13 0.97 16 5 C -0.51 -27.38 8.84 25.60 0.23 -27.15 16 6 H 0.05 2.81 7.74 -2.91 -0.02 2.78 16 7 C 0.01 0.35 5.46 84.65 0.46 0.81 16 8 N -0.93 -54.92 13.29 21.45 0.28 -54.63 16 9 Si 0.94 44.50 29.54 68.60 2.03 46.53 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 13 N -0.61 -20.09 2.61 -698.21 -1.82 -21.92 16 14 C 0.10 2.74 9.29 127.77 1.19 3.92 16 15 C 0.22 6.54 6.53 38.17 0.25 6.79 16 16 C -0.17 -4.05 9.16 22.45 0.21 -3.84 16 17 C -0.06 -1.17 10.02 22.21 0.22 -0.95 16 18 C -0.14 -2.90 9.75 22.55 0.22 -2.68 16 19 C 0.00 -0.01 5.73 -21.38 -0.12 -0.13 16 20 C 0.28 8.74 15.33 88.33 1.35 10.09 16 21 N -0.47 -16.28 18.54 19.01 0.35 -15.93 16 22 C -0.17 -5.45 9.02 22.68 0.20 -5.24 16 23 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 24 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.06 1.67 7.79 -2.39 -0.02 1.65 16 26 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 27 H 0.01 0.40 6.31 -2.39 -0.02 0.38 16 28 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.87 6.45 -2.39 -0.02 1.85 16 31 H 0.05 1.77 6.10 -2.39 -0.01 1.75 16 32 H 0.15 2.75 6.29 -2.91 -0.02 2.74 16 33 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 35 H 0.11 4.01 5.73 -2.91 -0.02 3.99 16 Total: -1.00 -64.33 299.25 7.05 -57.28 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: 1.09 Total: 4.27 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: 5.12 Total: -15.60 kcal Atomic # 7 Polarization: -91.29 SS G_CDS: -1.19 Total: -92.48 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -64.33 7.05 -57.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695810117.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.446 kcal (2) G-P(sol) polarization free energy of solvation -64.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds