Wall clock time and date at job start Mon Mar 30 2020 06:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.47338 * 2 1 4 4 C 1.53001 * 109.46750 * 240.00412 * 2 1 3 5 5 C 1.50697 * 109.47160 * 175.00211 * 4 2 1 6 6 H 1.08004 * 120.00162 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00252 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99676 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00026 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.46945 * 90.00211 * 9 7 5 11 11 H 1.48494 * 109.47041 * 210.00360 * 9 7 5 12 12 H 1.48503 * 109.46872 * 329.99929 * 9 7 5 13 13 N 1.46901 * 109.47115 * 120.00939 * 2 1 3 14 14 C 1.46899 * 110.99637 * 316.87363 * 13 2 1 15 15 C 1.39034 * 110.99822 * 192.92514 * 13 2 1 16 16 C 1.38889 * 120.17027 * 67.67206 * 15 13 2 17 17 C 1.38015 * 120.06576 * 179.97438 * 16 15 13 18 18 C 1.38563 * 120.42734 * 0.02562 * 17 16 15 19 19 C 1.37798 * 120.34074 * 359.97438 * 18 17 16 20 20 C 1.39728 * 119.92399 * 0.24502 * 19 18 17 21 21 C 1.43199 * 120.20547 * 179.74763 * 20 19 18 22 22 N 4.37475 * 116.43352 * 170.98611 * 2 1 3 23 23 H 1.09005 * 109.47347 * 306.77275 * 1 2 3 24 24 H 1.09004 * 109.47210 * 66.76550 * 1 2 3 25 25 H 1.09001 * 109.47498 * 186.77209 * 1 2 3 26 26 H 1.08999 * 109.47302 * 295.00213 * 4 2 1 27 27 H 1.08999 * 109.47583 * 55.00541 * 4 2 1 28 28 H 0.97003 * 119.99250 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.47526 * 296.05047 * 14 13 2 30 30 H 1.09006 * 109.46805 * 56.05096 * 14 13 2 31 31 H 1.09003 * 109.47015 * 176.04697 * 14 13 2 32 32 H 1.07998 * 119.96542 * 359.95759 * 16 15 13 33 33 H 1.08001 * 119.78153 * 180.02562 * 17 16 15 34 34 H 1.08001 * 119.83162 * 180.02562 * 18 17 16 35 35 H 1.08006 * 120.03481 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5417 -0.6149 -1.3129 6 1 4.0789 -0.0863 -0.5393 7 6 4.2302 -1.1926 -2.3586 8 7 5.5409 -1.1002 -2.4136 9 14 3.3012 -2.1076 -3.6962 10 1 2.9396 -1.1623 -4.7828 11 1 4.1599 -3.1876 -4.2450 12 1 2.0657 -2.7002 -3.1239 13 7 2.0196 -0.6927 1.1993 14 6 1.2514 -0.2959 2.3869 15 6 3.3784 -0.4653 1.3861 16 6 3.8347 0.8039 1.7176 17 6 5.1840 1.0271 1.9031 18 6 6.0928 -0.0090 1.7602 19 6 5.6590 -1.2750 1.4317 20 6 4.2967 -1.5162 1.2361 21 6 3.8399 -2.8283 0.8892 22 7 3.4774 -3.8690 0.6138 23 1 -0.3634 0.6152 0.8232 24 1 -0.3634 0.4054 -0.9443 25 1 -0.3634 -1.0205 0.1212 26 1 1.7514 -1.7714 -1.2058 27 1 1.6053 -0.2616 -2.1370 28 1 6.0251 -1.5064 -3.1495 29 1 1.4046 0.7657 2.5809 30 1 0.1918 -0.4844 2.2138 31 1 1.5875 -0.8747 3.2472 32 1 3.1329 1.6171 1.8302 33 1 5.5336 2.0158 2.1612 34 1 7.1465 0.1763 1.9080 35 1 6.3718 -2.0789 1.3212 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695811427.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:19 Heat of formation + Delta-G solvation = 73.326713 kcal Electronic energy + Delta-G solvation = -18130.561769 eV Core-core repulsion = 15515.373064 eV Total energy + Delta-G solvation = -2615.188705 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 2.97 seconds Orbital eigenvalues (eV) -39.82816 -36.75288 -35.32830 -32.96485 -31.51962 -30.62245 -29.47829 -27.43795 -25.50924 -22.98447 -22.60021 -21.34922 -19.22778 -18.16996 -16.76524 -16.18320 -15.22421 -14.82615 -14.26726 -14.23797 -13.61248 -13.37923 -12.89205 -12.65755 -12.40075 -12.29983 -11.94554 -11.78467 -11.72366 -11.54714 -11.31570 -11.22940 -11.07092 -10.85956 -10.55318 -10.33848 -9.82832 -9.53828 -9.15011 -8.49186 -8.22864 -7.90293 -7.70069 -5.96191 -3.90483 1.59018 1.94392 3.34639 3.43848 3.50433 3.74368 3.82716 4.31513 4.53515 4.59938 5.05333 5.39145 5.41931 5.50682 5.52823 5.59923 5.67473 5.77958 5.86110 5.91210 6.06833 6.08606 6.21007 6.29775 6.43151 6.56717 6.66172 6.84205 6.94497 7.03206 7.10455 7.31582 7.37433 7.64181 7.86366 7.99466 8.57187 8.59142 9.08108 9.66855 11.14146 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017611 B = 0.012730 C = 0.009864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.543626 B = 2199.000135 C = 2837.990241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.098 3.902 3 H 0.044 0.956 4 C -0.011 4.011 5 C -0.518 4.518 6 H 0.093 0.907 7 C 0.077 3.923 8 N -0.893 5.893 9 Si 0.861 3.139 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.266 1.266 13 N -0.506 5.506 14 C 0.024 3.976 15 C 0.178 3.822 16 C -0.164 4.164 17 C -0.091 4.091 18 C -0.127 4.127 19 C -0.058 4.058 20 C 0.030 3.970 21 C 0.299 3.701 22 N -0.453 5.453 23 H 0.047 0.953 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.023 0.977 27 H 0.015 0.985 28 H 0.259 0.741 29 H 0.027 0.973 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.331 5.305 10.161 11.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.008 4.008 3 H 0.062 0.938 4 C -0.049 4.049 5 C -0.556 4.556 6 H 0.111 0.889 7 C -0.125 4.125 8 N -0.532 5.532 9 Si 0.689 3.311 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.191 1.191 13 N -0.227 5.227 14 C -0.123 4.123 15 C 0.081 3.919 16 C -0.184 4.184 17 C -0.111 4.111 18 C -0.145 4.145 19 C -0.080 4.080 20 C 0.026 3.974 21 C -0.015 4.015 22 N -0.129 5.129 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.042 0.958 27 H 0.033 0.967 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.853 3.126 9.535 10.748 hybrid contribution -0.134 0.815 -1.014 1.308 sum -3.987 3.941 8.521 10.199 Atomic orbital electron populations 1.22046 0.95998 1.01769 1.01014 1.21744 0.92893 0.95792 0.90326 0.93772 1.19690 0.97881 0.96085 0.91240 1.21485 0.89653 1.34511 1.09930 0.88887 1.24864 0.94578 0.95683 0.97365 1.69889 1.06175 1.45208 1.31909 0.87051 0.80848 0.80200 0.82975 1.20587 1.21618 1.19099 1.59393 1.00441 1.59370 1.03539 1.22510 0.98943 0.98378 0.92463 1.18256 0.88971 0.90886 0.93774 1.21294 0.96326 0.96339 1.04461 1.20931 0.92870 0.98481 0.98775 1.20791 0.99241 0.92537 1.01900 1.20880 0.93124 0.97567 0.96387 1.15739 0.92650 0.86607 1.02434 1.25161 0.92153 0.92019 0.92184 1.80981 1.08878 1.13321 1.09700 0.93367 0.92285 0.92170 0.95843 0.96666 0.93078 0.95469 0.90782 0.91864 0.86507 0.86576 0.86096 0.85874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.05 37.15 0.30 -2.05 16 2 C 0.10 1.88 2.38 -67.71 -0.16 1.72 16 3 H 0.04 0.86 7.25 -51.93 -0.38 0.48 16 4 C -0.01 -0.27 3.72 -27.88 -0.10 -0.37 16 5 C -0.52 -13.73 6.86 -34.44 -0.24 -13.97 16 6 H 0.09 2.50 4.46 -52.48 -0.23 2.26 16 7 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 8 N -0.89 -26.20 13.96 55.43 0.77 -25.42 16 9 Si 0.86 22.41 27.47 -169.99 -4.67 17.74 16 10 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.29 -7.65 7.11 56.52 0.40 -7.24 16 12 H -0.27 -6.95 6.54 56.52 0.37 -6.58 16 13 N -0.51 -9.35 3.98 -171.10 -0.68 -10.03 16 14 C 0.02 0.34 8.55 60.06 0.51 0.85 16 15 C 0.18 3.39 2.57 -83.56 -0.21 3.17 16 16 C -0.16 -2.73 7.72 -39.42 -0.30 -3.04 16 17 C -0.09 -1.40 10.03 -39.54 -0.40 -1.80 16 18 C -0.13 -2.03 10.02 -39.62 -0.40 -2.43 16 19 C -0.06 -1.07 9.73 -39.19 -0.38 -1.46 16 20 C 0.03 0.61 3.71 -106.62 -0.40 0.22 16 21 C 0.30 6.81 14.14 -22.48 -0.32 6.50 16 22 N -0.45 -10.91 18.54 41.84 0.78 -10.14 16 23 H 0.05 0.62 6.74 -51.93 -0.35 0.27 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 26 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 27 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.03 0.34 6.93 -51.93 -0.36 -0.02 16 30 H 0.07 0.95 6.08 -51.93 -0.32 0.64 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.12 1.73 7.02 -52.49 -0.37 1.36 16 33 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 34 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 35 H 0.12 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 287.76 15.07 4.34 4.34 Total: -1.00 -30.99 287.76 -6.13 -37.12 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -4.47 Total: -3.02 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -2.19 Total: -10.58 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.87 Total: -45.59 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.67 Total: 17.74 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.99 -6.13 -37.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695811427.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.445 kcal (2) G-P(sol) polarization free energy of solvation -30.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.97 seconds