Wall clock time and date at job start Mon Mar 30 2020 06:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.47338 * 2 1 4 4 C 1.53001 * 109.46750 * 240.00412 * 2 1 3 5 5 C 1.50697 * 109.47160 * 175.00211 * 4 2 1 6 6 H 1.08004 * 120.00162 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00252 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99676 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00026 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.46945 * 90.00211 * 9 7 5 11 11 H 1.48494 * 109.47041 * 210.00360 * 9 7 5 12 12 H 1.48503 * 109.46872 * 329.99929 * 9 7 5 13 13 N 1.46901 * 109.47115 * 120.00939 * 2 1 3 14 14 C 1.46899 * 110.99637 * 316.87363 * 13 2 1 15 15 C 1.39034 * 110.99822 * 192.92514 * 13 2 1 16 16 C 1.38889 * 120.17027 * 67.67206 * 15 13 2 17 17 C 1.38015 * 120.06576 * 179.97438 * 16 15 13 18 18 C 1.38563 * 120.42734 * 0.02562 * 17 16 15 19 19 C 1.37798 * 120.34074 * 359.97438 * 18 17 16 20 20 C 1.39728 * 119.92399 * 0.24502 * 19 18 17 21 21 C 1.43199 * 120.20547 * 179.74763 * 20 19 18 22 22 N 4.37475 * 116.43352 * 170.98611 * 2 1 3 23 23 H 1.09005 * 109.47347 * 306.77275 * 1 2 3 24 24 H 1.09004 * 109.47210 * 66.76550 * 1 2 3 25 25 H 1.09001 * 109.47498 * 186.77209 * 1 2 3 26 26 H 1.08999 * 109.47302 * 295.00213 * 4 2 1 27 27 H 1.08999 * 109.47583 * 55.00541 * 4 2 1 28 28 H 0.97003 * 119.99250 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.47526 * 296.05047 * 14 13 2 30 30 H 1.09006 * 109.46805 * 56.05096 * 14 13 2 31 31 H 1.09003 * 109.47015 * 176.04697 * 14 13 2 32 32 H 1.07998 * 119.96542 * 359.95759 * 16 15 13 33 33 H 1.08001 * 119.78153 * 180.02562 * 17 16 15 34 34 H 1.08001 * 119.83162 * 180.02562 * 18 17 16 35 35 H 1.08006 * 120.03481 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5417 -0.6149 -1.3129 6 1 4.0789 -0.0863 -0.5393 7 6 4.2302 -1.1926 -2.3586 8 7 5.5409 -1.1002 -2.4136 9 14 3.3012 -2.1076 -3.6962 10 1 2.9396 -1.1623 -4.7828 11 1 4.1599 -3.1876 -4.2450 12 1 2.0657 -2.7002 -3.1239 13 7 2.0196 -0.6927 1.1993 14 6 1.2514 -0.2959 2.3869 15 6 3.3784 -0.4653 1.3861 16 6 3.8347 0.8039 1.7176 17 6 5.1840 1.0271 1.9031 18 6 6.0928 -0.0090 1.7602 19 6 5.6590 -1.2750 1.4317 20 6 4.2967 -1.5162 1.2361 21 6 3.8399 -2.8283 0.8892 22 7 3.4774 -3.8690 0.6138 23 1 -0.3634 0.6152 0.8232 24 1 -0.3634 0.4054 -0.9443 25 1 -0.3634 -1.0205 0.1212 26 1 1.7514 -1.7714 -1.2058 27 1 1.6053 -0.2616 -2.1370 28 1 6.0251 -1.5064 -3.1495 29 1 1.4046 0.7657 2.5809 30 1 0.1918 -0.4844 2.2138 31 1 1.5875 -0.8747 3.2472 32 1 3.1329 1.6171 1.8302 33 1 5.5336 2.0158 2.1612 34 1 7.1465 0.1763 1.9080 35 1 6.3718 -2.0789 1.3212 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695811427.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:13 Heat of formation + Delta-G solvation = 54.625062 kcal Electronic energy + Delta-G solvation = -18131.372734 eV Core-core repulsion = 15515.373064 eV Total energy + Delta-G solvation = -2615.999670 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 5.23 seconds Orbital eigenvalues (eV) -41.21118 -38.14722 -37.05220 -34.91273 -33.10996 -32.03590 -30.97875 -28.93747 -26.86414 -24.38793 -24.25739 -22.89411 -20.71564 -19.60839 -18.78820 -17.54886 -16.65381 -16.44524 -16.00153 -15.59543 -14.98022 -14.94806 -14.54071 -14.31565 -14.05913 -13.83829 -13.53138 -13.43541 -13.33552 -13.08413 -12.85515 -12.57733 -12.55405 -12.39723 -12.15012 -11.88971 -11.72978 -11.27036 -11.04458 -10.62641 -9.61257 -9.26907 -9.13036 -8.11719 -6.05135 0.17125 0.61471 1.24308 1.31376 1.39018 2.00884 2.30056 2.40748 2.94782 3.10711 3.26170 3.52305 4.15223 4.23958 4.27730 4.32929 4.49647 4.55622 4.61460 4.68935 4.80765 4.88226 4.92818 5.08805 5.11770 5.15175 5.23318 5.31437 5.47921 5.55590 5.65694 5.71050 5.78753 6.05458 6.24843 6.49749 6.63500 6.86529 6.98778 7.53107 8.99422 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017611 B = 0.012730 C = 0.009864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.543626 B = 2199.000135 C = 2837.990241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.103 3.897 3 H 0.047 0.953 4 C -0.013 4.013 5 C -0.500 4.500 6 H 0.091 0.909 7 C 0.031 3.969 8 N -0.925 5.925 9 Si 0.894 3.106 10 H -0.267 1.267 11 H -0.299 1.299 12 H -0.273 1.273 13 N -0.529 5.529 14 C 0.024 3.976 15 C 0.169 3.831 16 C -0.167 4.167 17 C -0.079 4.079 18 C -0.129 4.129 19 C -0.071 4.071 20 C -0.012 4.012 21 C 0.308 3.692 22 N -0.498 5.498 23 H 0.082 0.918 24 H 0.064 0.936 25 H 0.051 0.949 26 H -0.005 1.005 27 H 0.015 0.985 28 H 0.255 0.745 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.142 0.858 33 H 0.156 0.844 34 H 0.152 0.848 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.073 7.839 11.519 14.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.003 4.003 3 H 0.065 0.935 4 C -0.050 4.050 5 C -0.538 4.538 6 H 0.109 0.891 7 C -0.166 4.166 8 N -0.566 5.566 9 Si 0.723 3.277 10 H -0.192 1.192 11 H -0.226 1.226 12 H -0.198 1.198 13 N -0.251 5.251 14 C -0.121 4.121 15 C 0.072 3.928 16 C -0.186 4.186 17 C -0.099 4.099 18 C -0.146 4.146 19 C -0.092 4.092 20 C -0.017 4.017 21 C -0.005 4.005 22 N -0.175 5.175 23 H 0.100 0.900 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.014 0.986 27 H 0.033 0.967 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.159 0.841 33 H 0.174 0.826 34 H 0.169 0.831 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.619 5.667 10.901 13.125 hybrid contribution 0.133 0.090 -1.322 1.331 sum -4.486 5.757 9.579 12.042 Atomic orbital electron populations 1.21984 0.93165 1.02110 1.02803 1.21589 0.95120 0.94900 0.88681 0.93489 1.19673 0.96246 0.95074 0.94048 1.21789 0.91080 1.32336 1.08558 0.89100 1.25370 0.95064 0.97033 0.99182 1.69965 1.06934 1.47132 1.32596 0.86515 0.79624 0.79521 0.82087 1.19235 1.22624 1.19826 1.59276 1.00770 1.60275 1.04770 1.22597 0.99054 0.99725 0.90761 1.18442 0.89118 0.91376 0.93913 1.21613 0.97538 0.95872 1.03626 1.21447 0.92237 0.99956 0.96212 1.21200 1.01143 0.91554 1.00750 1.21111 0.92491 0.99005 0.96573 1.16078 0.94049 0.86076 1.05460 1.25802 0.91148 0.92483 0.91054 1.80950 1.10311 1.14578 1.11684 0.89954 0.91736 0.92969 0.98642 0.96713 0.93561 0.93298 0.89419 0.91516 0.84055 0.82607 0.83066 0.85933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 8.05 71.98 0.58 -3.45 16 2 C 0.10 3.73 2.38 44.91 0.11 3.83 16 3 H 0.05 1.67 7.25 -2.39 -0.02 1.65 16 4 C -0.01 -0.59 3.72 29.85 0.11 -0.48 16 5 C -0.50 -26.34 6.86 25.60 0.18 -26.17 16 6 H 0.09 4.80 4.46 -2.91 -0.01 4.79 16 7 C 0.03 1.77 5.47 84.66 0.46 2.23 16 8 N -0.92 -54.88 13.96 21.45 0.30 -54.58 16 9 Si 0.89 46.55 27.47 68.60 1.88 48.43 16 10 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.30 -15.90 7.11 99.48 0.71 -15.20 16 12 H -0.27 -14.37 6.54 99.48 0.65 -13.72 16 13 N -0.53 -18.57 3.98 -695.25 -2.77 -21.34 16 14 C 0.02 0.62 8.55 127.69 1.09 1.71 16 15 C 0.17 6.12 2.57 38.67 0.10 6.22 16 16 C -0.17 -4.97 7.72 22.37 0.17 -4.80 16 17 C -0.08 -2.13 10.03 22.29 0.22 -1.90 16 18 C -0.13 -3.78 10.02 22.24 0.22 -3.56 16 19 C -0.07 -2.56 9.73 22.53 0.22 -2.34 16 20 C -0.01 -0.50 3.71 -21.16 -0.08 -0.58 16 21 C 0.31 14.43 14.14 88.33 1.25 15.68 16 22 N -0.50 -24.93 18.54 19.00 0.35 -24.58 16 23 H 0.08 1.76 6.74 -2.38 -0.02 1.75 16 24 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.05 1.55 8.11 -2.39 -0.02 1.53 16 26 H 0.00 -0.25 7.20 -2.39 -0.02 -0.27 16 27 H 0.01 0.68 7.57 -2.39 -0.02 0.66 16 28 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 29 H 0.05 1.02 6.93 -2.39 -0.02 1.00 16 30 H 0.09 1.94 6.08 -2.38 -0.01 1.93 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.14 3.49 7.02 -2.91 -0.02 3.47 16 33 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 34 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 35 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -68.07 287.76 5.44 -62.63 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: 1.03 Total: 3.05 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: 4.64 Total: -13.62 kcal Atomic # 7 Polarization: -98.39 SS G_CDS: -2.11 Total: -100.50 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.88 Total: 48.43 kcal Total: -68.07 5.44 -62.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695811427.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.258 kcal (2) G-P(sol) polarization free energy of solvation -68.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.23 seconds