Wall clock time and date at job start Mon Mar 30 2020 06:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47243 * 2 1 4 4 C 1.53005 * 109.46951 * 239.99659 * 2 1 3 5 5 C 1.53002 * 109.46887 * 174.99960 * 4 2 1 6 6 C 1.47199 * 109.46995 * 179.97438 * 5 4 2 7 7 N 4.86663 * 126.63676 * 241.84110 * 2 1 3 8 8 N 1.46497 * 109.46927 * 119.99994 * 2 1 3 9 9 C 1.39682 * 119.99940 * 274.99811 * 8 2 1 10 10 C 1.39343 * 119.95139 * 0.02562 * 9 8 2 11 11 C 1.38470 * 120.42275 * 179.97438 * 10 9 8 12 12 C 1.37690 * 120.32905 * 0.25682 * 11 10 9 13 13 C 1.40748 * 119.89015 * 359.49681 * 12 11 10 14 14 C 1.41403 * 120.20614 * 180.25474 * 13 12 11 15 15 H 1.08003 * 120.00093 * 204.60692 * 14 13 12 16 16 C 1.39932 * 120.00264 * 24.60668 * 14 13 12 17 17 N 1.30831 * 120.00018 * 17.73629 * 16 14 13 18 18 Si 1.86802 * 119.99939 * 197.74299 * 16 14 13 19 19 H 1.48492 * 109.47219 * 59.99678 * 18 16 14 20 20 H 1.48502 * 109.46677 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46999 * 299.99377 * 18 16 14 22 22 C 1.38273 * 119.95547 * 179.97438 * 9 8 2 23 23 H 1.08994 * 109.47243 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47499 * 300.00426 * 1 2 3 25 25 H 1.09003 * 109.47115 * 60.00040 * 1 2 3 26 26 H 1.08997 * 109.47160 * 295.00291 * 4 2 1 27 27 H 1.09002 * 109.47011 * 55.00496 * 4 2 1 28 28 H 1.08997 * 109.47491 * 300.00128 * 5 4 2 29 29 H 1.09002 * 109.46858 * 60.00442 * 5 4 2 30 30 H 0.97005 * 120.00604 * 94.99739 * 8 2 1 31 31 H 1.08002 * 119.78533 * 359.95569 * 10 9 8 32 32 H 1.08003 * 119.83539 * 179.97438 * 11 10 9 33 33 H 1.08000 * 120.05200 * 179.72359 * 12 11 10 34 34 H 0.96998 * 120.00313 * 180.02562 * 17 16 14 35 35 H 1.08004 * 120.16163 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 6 4.0555 -1.3079 -2.5152 7 7 4.4341 -1.8429 -3.4430 8 7 2.0183 -0.6906 1.1962 9 6 2.1517 0.0062 2.3994 10 6 1.8196 1.3581 2.4609 11 6 1.9475 2.0582 3.6487 12 6 2.4098 1.4268 4.7816 13 6 2.7443 0.0604 4.7360 14 6 3.2146 -0.5960 5.8969 15 1 3.8293 -1.4793 5.8061 16 6 2.8836 -0.1010 7.1632 17 7 1.8838 0.7319 7.2992 18 14 3.8693 -0.6294 8.6594 19 1 5.2899 -0.2359 8.4805 20 1 3.3218 0.0316 9.8713 21 1 3.7798 -2.1034 8.8158 22 6 2.6121 -0.6466 3.5280 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.7516 -1.7716 -1.2056 27 1 1.6054 -0.2618 -2.1370 28 1 3.8532 0.4368 -1.3574 29 1 3.9994 -1.0729 -0.4259 30 1 2.2490 -1.6318 1.1527 31 1 1.4603 1.8631 1.5764 32 1 1.6878 3.1059 3.6855 33 1 2.5121 1.9783 5.7045 34 1 1.6546 1.0753 8.1769 35 1 2.8687 -1.6947 3.4818 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695814930.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:36 Heat of formation + Delta-G solvation = 30.450437 kcal Electronic energy + Delta-G solvation = -16498.492153 eV Core-core repulsion = 13881.444193 eV Total energy + Delta-G solvation = -2617.047960 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -38.43496 -37.08347 -35.99252 -33.69561 -32.13770 -30.23329 -29.62425 -26.97217 -25.21084 -24.62085 -21.54892 -20.65175 -19.64413 -17.51385 -17.45307 -15.84500 -15.46579 -15.21182 -14.68946 -14.27562 -14.09981 -13.43781 -13.25552 -12.77264 -12.61096 -12.58185 -12.45433 -12.09725 -11.74704 -11.62987 -11.47003 -11.15529 -11.03115 -11.00302 -10.73220 -10.58247 -10.33477 -9.75144 -9.31833 -9.22110 -8.74914 -7.38544 -6.71087 -6.22312 -4.31002 2.65044 2.69141 2.87371 3.09369 3.12219 3.22902 3.37240 3.86768 3.96565 4.15506 4.71345 4.82322 4.93173 5.02956 5.44328 5.47816 5.64722 5.74349 5.85073 5.89706 5.91741 6.18610 6.34028 6.44844 6.57116 7.04143 7.06467 7.12110 7.34587 7.39177 7.45688 7.78371 7.90977 8.14531 8.25454 8.50823 8.61945 8.79139 9.00143 9.12165 10.24990 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.032322 B = 0.004675 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.079839 B = 5987.842179 C = 6516.771054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.121 4.121 5 C -0.028 4.028 6 C 0.212 3.788 7 N -0.451 5.451 8 N -0.758 5.758 9 C 0.226 3.774 10 C -0.302 4.302 11 C -0.076 4.076 12 C -0.199 4.199 13 C 0.142 3.858 14 C -0.466 4.466 15 H 0.075 0.925 16 C 0.078 3.922 17 N -0.792 5.792 18 Si 0.905 3.095 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.290 4.290 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.110 0.890 29 H 0.114 0.886 30 H 0.387 0.613 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.279 0.721 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.804 0.254 -9.087 9.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.051 3.949 3 H 0.099 0.901 4 C -0.160 4.160 5 C -0.068 4.068 6 C -0.106 4.106 7 N -0.128 5.128 8 N -0.392 5.392 9 C 0.128 3.872 10 C -0.325 4.325 11 C -0.095 4.095 12 C -0.220 4.220 13 C 0.139 3.861 14 C -0.495 4.495 15 H 0.093 0.907 16 C -0.139 4.139 17 N -0.417 5.417 18 Si 0.730 3.270 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.314 4.314 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.128 0.872 29 H 0.132 0.868 30 H 0.220 0.780 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.131 0.869 34 H 0.090 0.910 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.435 -0.267 -10.400 10.413 hybrid contribution 0.203 -0.378 1.150 1.227 sum -0.231 -0.645 -9.251 9.276 Atomic orbital electron populations 1.22291 0.96531 1.01900 1.01971 1.20638 0.93271 0.96975 0.83997 0.90129 1.21852 0.92626 1.02398 0.99148 1.19387 0.96826 1.00742 0.89893 1.29433 0.93114 0.93433 0.94584 1.81205 1.09364 1.10186 1.12037 1.44550 1.75991 1.11436 1.07244 1.17420 0.94262 0.91017 0.84533 1.19878 1.21207 0.93562 0.97835 1.20445 0.98683 0.97084 0.93275 1.21173 1.08466 0.95044 0.97302 1.17325 0.86634 0.91106 0.91080 1.19526 1.28787 1.11153 0.90081 0.90715 1.25879 0.93661 0.93648 1.00751 1.69849 1.21258 1.24953 1.25659 0.86429 0.81015 0.79708 0.79886 1.18877 1.20427 1.19115 1.20397 1.19133 0.98137 0.93689 0.92886 0.91541 0.92812 0.90881 0.90218 0.87167 0.86771 0.77972 0.89472 0.89777 0.86912 0.90991 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 9.42 37.16 0.35 -1.62 16 2 C 0.16 1.82 2.27 -67.93 -0.15 1.67 16 3 H 0.08 0.98 6.47 -51.93 -0.34 0.64 16 4 C -0.12 -1.02 4.71 -26.73 -0.13 -1.15 16 5 C -0.03 -0.24 5.59 -29.52 -0.16 -0.40 16 6 C 0.21 2.30 15.43 -20.76 -0.32 1.98 16 7 N -0.45 -6.23 18.54 42.15 0.78 -5.44 16 8 N -0.76 -11.30 4.70 -52.22 -0.25 -11.55 16 9 C 0.23 4.58 6.63 -83.86 -0.56 4.02 16 10 C -0.30 -6.28 8.85 -39.08 -0.35 -6.63 16 11 C -0.08 -1.73 10.01 -39.70 -0.40 -2.13 16 12 C -0.20 -5.12 8.69 -38.83 -0.34 -5.46 16 13 C 0.14 3.71 5.57 -106.85 -0.60 3.11 16 14 C -0.47 -12.26 9.05 -37.74 -0.34 -12.61 16 15 H 0.07 1.89 7.91 -52.48 -0.41 1.48 16 16 C 0.08 1.96 5.14 -17.34 -0.09 1.87 16 17 N -0.79 -20.45 10.96 55.55 0.61 -19.84 16 18 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 19 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 20 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 C -0.29 -6.78 9.63 -38.68 -0.37 -7.16 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.95 7.69 -51.93 -0.40 0.55 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.11 1.00 7.75 -51.93 -0.40 0.59 16 30 H 0.39 5.25 8.61 -40.82 -0.35 4.89 16 31 H 0.09 1.59 6.07 -52.49 -0.32 1.28 16 32 H 0.08 1.73 8.06 -52.48 -0.42 1.31 16 33 H 0.11 3.02 6.16 -52.49 -0.32 2.70 16 34 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 35 H 0.09 1.97 8.06 -52.48 -0.42 1.54 16 LS Contribution 301.89 15.07 4.55 4.55 Total: -1.00 -28.77 301.89 -7.43 -36.20 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -4.64 Total: 7.04 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: -3.45 Total: -24.50 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 1.14 Total: -36.83 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.77 -7.43 -36.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814930.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.646 kcal (2) G-P(sol) polarization free energy of solvation -28.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds