Wall clock time and date at job start Mon Mar 30 2020 06:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47243 * 2 1 4 4 C 1.53005 * 109.46951 * 239.99659 * 2 1 3 5 5 C 1.53002 * 109.46887 * 174.99960 * 4 2 1 6 6 C 1.47199 * 109.46995 * 179.97438 * 5 4 2 7 7 N 4.86663 * 126.63676 * 241.84110 * 2 1 3 8 8 N 1.46497 * 109.46927 * 119.99994 * 2 1 3 9 9 C 1.39682 * 119.99940 * 274.99811 * 8 2 1 10 10 C 1.39343 * 119.95139 * 0.02562 * 9 8 2 11 11 C 1.38470 * 120.42275 * 179.97438 * 10 9 8 12 12 C 1.37690 * 120.32905 * 0.25682 * 11 10 9 13 13 C 1.40748 * 119.89015 * 359.49681 * 12 11 10 14 14 C 1.41403 * 120.20614 * 180.25474 * 13 12 11 15 15 H 1.08003 * 120.00093 * 204.60692 * 14 13 12 16 16 C 1.39932 * 120.00264 * 24.60668 * 14 13 12 17 17 N 1.30831 * 120.00018 * 17.73629 * 16 14 13 18 18 Si 1.86802 * 119.99939 * 197.74299 * 16 14 13 19 19 H 1.48492 * 109.47219 * 59.99678 * 18 16 14 20 20 H 1.48502 * 109.46677 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46999 * 299.99377 * 18 16 14 22 22 C 1.38273 * 119.95547 * 179.97438 * 9 8 2 23 23 H 1.08994 * 109.47243 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47499 * 300.00426 * 1 2 3 25 25 H 1.09003 * 109.47115 * 60.00040 * 1 2 3 26 26 H 1.08997 * 109.47160 * 295.00291 * 4 2 1 27 27 H 1.09002 * 109.47011 * 55.00496 * 4 2 1 28 28 H 1.08997 * 109.47491 * 300.00128 * 5 4 2 29 29 H 1.09002 * 109.46858 * 60.00442 * 5 4 2 30 30 H 0.97005 * 120.00604 * 94.99739 * 8 2 1 31 31 H 1.08002 * 119.78533 * 359.95569 * 10 9 8 32 32 H 1.08003 * 119.83539 * 179.97438 * 11 10 9 33 33 H 1.08000 * 120.05200 * 179.72359 * 12 11 10 34 34 H 0.96998 * 120.00313 * 180.02562 * 17 16 14 35 35 H 1.08004 * 120.16163 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 6 4.0555 -1.3079 -2.5152 7 7 4.4341 -1.8429 -3.4430 8 7 2.0183 -0.6906 1.1962 9 6 2.1517 0.0062 2.3994 10 6 1.8196 1.3581 2.4609 11 6 1.9475 2.0582 3.6487 12 6 2.4098 1.4268 4.7816 13 6 2.7443 0.0604 4.7360 14 6 3.2146 -0.5960 5.8969 15 1 3.8293 -1.4793 5.8061 16 6 2.8836 -0.1010 7.1632 17 7 1.8838 0.7319 7.2992 18 14 3.8693 -0.6294 8.6594 19 1 5.2899 -0.2359 8.4805 20 1 3.3218 0.0316 9.8713 21 1 3.7798 -2.1034 8.8158 22 6 2.6121 -0.6466 3.5280 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.7516 -1.7716 -1.2056 27 1 1.6054 -0.2618 -2.1370 28 1 3.8532 0.4368 -1.3574 29 1 3.9994 -1.0729 -0.4259 30 1 2.2490 -1.6318 1.1527 31 1 1.4603 1.8631 1.5764 32 1 1.6878 3.1059 3.6855 33 1 2.5121 1.9783 5.7045 34 1 1.6546 1.0753 8.1769 35 1 2.8687 -1.6947 3.4818 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695814930.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:34 Heat of formation + Delta-G solvation = 14.882564 kcal Electronic energy + Delta-G solvation = -16499.167227 eV Core-core repulsion = 13881.444193 eV Total energy + Delta-G solvation = -2617.723034 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.83540 -38.26088 -37.20613 -35.36171 -33.42447 -31.66729 -31.08870 -28.49013 -27.04605 -25.48739 -22.98453 -22.33426 -21.00070 -19.13827 -18.33066 -17.38415 -16.82661 -16.53381 -16.21389 -15.58427 -15.15264 -14.72212 -14.55456 -14.27816 -13.86723 -13.75167 -13.64312 -13.42124 -13.23192 -12.91574 -12.77797 -12.58970 -12.41885 -12.16826 -11.97308 -11.86343 -11.57146 -11.48502 -11.08520 -10.98436 -10.35031 -9.23706 -8.55061 -7.79697 -6.25315 1.13562 1.40741 1.45183 1.52250 1.66533 1.80375 1.84775 2.25844 2.87793 2.92759 3.06626 3.94488 4.07281 4.16039 4.27711 4.57341 4.63230 4.73871 4.80719 4.87512 4.99541 5.05159 5.16937 5.23456 5.25185 5.31652 5.38812 5.52417 5.55742 5.71939 6.06140 6.12376 6.30584 6.42287 6.63138 6.72105 7.01170 7.10483 7.19713 7.38684 8.42758 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.032322 B = 0.004675 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.079839 B = 5987.842179 C = 6516.771054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.155 3.845 3 H 0.084 0.916 4 C -0.110 4.110 5 C -0.024 4.024 6 C 0.240 3.760 7 N -0.506 5.506 8 N -0.746 5.746 9 C 0.242 3.758 10 C -0.296 4.296 11 C -0.078 4.078 12 C -0.236 4.236 13 C 0.111 3.889 14 C -0.506 4.506 15 H 0.071 0.929 16 C 0.037 3.963 17 N -0.826 5.826 18 Si 0.977 3.023 19 H -0.262 1.262 20 H -0.269 1.269 21 H -0.261 1.261 22 C -0.311 4.311 23 H 0.053 0.947 24 H 0.037 0.963 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.131 0.869 29 H 0.114 0.886 30 H 0.396 0.604 31 H 0.120 0.880 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.285 0.715 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.060 0.365 -10.678 10.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.050 3.950 3 H 0.102 0.898 4 C -0.149 4.149 5 C -0.064 4.064 6 C -0.077 4.077 7 N -0.184 5.184 8 N -0.378 5.378 9 C 0.141 3.859 10 C -0.319 4.319 11 C -0.097 4.097 12 C -0.257 4.257 13 C 0.108 3.892 14 C -0.536 4.536 15 H 0.089 0.911 16 C -0.178 4.178 17 N -0.452 5.452 18 Si 0.798 3.202 19 H -0.186 1.186 20 H -0.193 1.193 21 H -0.185 1.185 22 C -0.335 4.335 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.121 0.879 28 H 0.149 0.851 29 H 0.132 0.868 30 H 0.230 0.770 31 H 0.138 0.862 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.704 -0.173 -12.046 12.068 hybrid contribution 0.196 -0.384 1.447 1.509 sum -0.508 -0.557 -10.600 10.626 Atomic orbital electron populations 1.22261 0.96228 1.02034 1.01987 1.20870 0.93393 0.97232 0.83521 0.89798 1.21755 0.92444 1.02540 0.98165 1.19517 0.96721 1.01591 0.88535 1.29765 0.91678 0.92108 0.94105 1.81245 1.11162 1.12066 1.13907 1.44642 1.74746 1.11846 1.06558 1.17410 0.91896 0.91064 0.85541 1.20215 1.19782 0.93746 0.98136 1.20741 0.97596 0.98229 0.93173 1.21076 1.11669 0.95257 0.97678 1.17677 0.87459 0.91737 0.92304 1.19787 1.30361 1.12022 0.91468 0.91119 1.26694 0.94231 0.93480 1.03348 1.69919 1.22539 1.26162 1.26618 0.85341 0.79234 0.79443 0.76173 1.18599 1.19347 1.18507 1.20531 1.20347 0.98420 0.94239 0.92778 0.94341 0.89986 0.90415 0.87907 0.85119 0.86836 0.76977 0.86185 0.87824 0.89211 0.90482 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.28 9.42 71.98 0.68 -2.60 16 2 C 0.16 2.95 2.27 44.99 0.10 3.06 16 3 H 0.08 1.62 6.47 -2.39 -0.02 1.61 16 4 C -0.11 -1.38 4.71 30.60 0.14 -1.23 16 5 C -0.02 -0.31 5.59 28.79 0.16 -0.14 16 6 C 0.24 4.57 15.43 89.44 1.38 5.95 16 7 N -0.51 -13.19 18.54 20.00 0.37 -12.82 16 8 N -0.75 -20.10 4.70 -319.12 -1.50 -21.60 16 9 C 0.24 9.45 6.63 38.16 0.25 9.70 16 10 C -0.30 -11.72 8.85 22.59 0.20 -11.52 16 11 C -0.08 -3.56 10.01 22.20 0.22 -3.34 16 12 C -0.24 -12.54 8.69 22.75 0.20 -12.34 16 13 C 0.11 6.02 5.57 -21.31 -0.12 5.90 16 14 C -0.51 -27.81 9.05 23.46 0.21 -27.59 16 15 H 0.07 3.75 7.91 -2.91 -0.02 3.73 16 16 C 0.04 1.90 5.14 85.25 0.44 2.34 16 17 N -0.83 -44.29 10.96 21.82 0.24 -44.05 16 18 Si 0.98 38.93 29.59 68.60 2.03 40.96 16 19 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 20 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 22 C -0.31 -14.71 9.63 22.85 0.22 -14.49 16 23 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.04 0.98 7.69 -2.39 -0.02 0.97 16 25 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.11 1.59 7.75 -2.39 -0.02 1.57 16 30 H 0.40 9.64 8.61 -92.70 -0.80 8.84 16 31 H 0.12 3.94 6.07 -2.91 -0.02 3.92 16 32 H 0.10 4.17 8.06 -2.91 -0.02 4.15 16 33 H 0.09 5.08 6.16 -2.91 -0.02 5.06 16 34 H 0.28 13.85 8.30 -92.71 -0.77 13.08 16 35 H 0.09 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -65.32 301.89 5.53 -59.79 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.30 Total: 24.02 kcal Atomic # 6 Polarization: -50.39 SS G_CDS: 4.09 Total: -46.30 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -0.89 Total: -78.47 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Total: -65.32 5.53 -59.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814930.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.669 kcal (2) G-P(sol) polarization free energy of solvation -65.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds