Wall clock time and date at job start Mon Mar 30 2020 06:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47194 * 2 1 4 4 C 1.53005 * 109.47200 * 119.99626 * 2 1 3 5 5 C 1.50696 * 109.47372 * 295.00712 * 4 2 1 6 6 H 1.08000 * 119.99974 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00187 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99818 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00288 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47554 * 89.99409 * 9 7 5 11 11 H 1.48504 * 109.47199 * 209.99833 * 9 7 5 12 12 H 1.48503 * 109.46755 * 329.99430 * 9 7 5 13 13 N 1.46498 * 109.47402 * 239.99765 * 2 1 3 14 14 C 1.36745 * 125.08455 * 293.53327 * 13 2 1 15 15 C 1.34257 * 109.90411 * 180.02562 * 14 13 2 16 16 C 1.46475 * 107.01931 * 0.02562 * 15 14 13 17 17 C 1.39827 * 133.97161 * 180.02562 * 16 15 14 18 18 C 1.36593 * 119.89785 * 180.02562 * 17 16 15 19 19 C 1.38793 * 120.59234 * 359.75676 * 18 17 16 20 20 C 1.38373 * 120.57166 * 0.50036 * 19 18 17 21 21 N 1.39836 * 120.17213 * 179.76022 * 20 19 18 22 22 C 1.37836 * 125.07581 * 113.57393 * 13 2 1 23 23 H 1.09009 * 109.47139 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47653 * 299.99826 * 1 2 3 25 25 H 1.08999 * 109.47548 * 60.00354 * 1 2 3 26 26 H 1.09003 * 109.46592 * 55.00309 * 4 2 1 27 27 H 1.08997 * 109.47269 * 175.00186 * 4 2 1 28 28 H 0.96997 * 119.99691 * 180.02562 * 8 7 5 29 29 H 1.08001 * 125.04301 * 0.03597 * 14 13 2 30 30 H 1.08004 * 126.49490 * 180.02562 * 15 14 13 31 31 H 1.07997 * 120.04686 * 359.97427 * 17 16 15 32 32 H 1.08000 * 119.70735 * 180.02562 * 18 17 16 33 33 H 1.07999 * 119.71547 * 180.28969 * 19 18 17 34 34 H 0.97003 * 119.99471 * 322.56391 * 21 20 19 35 35 H 0.96994 * 120.00181 * 142.29267 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0804 0.9745 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6764 -1.5187 3.8512 9 14 1.4994 0.5634 5.2496 10 1 0.1723 0.0953 5.7238 11 1 2.5091 0.3536 6.3182 12 1 1.4245 2.0086 4.9163 13 7 2.0183 -0.6906 -1.1961 14 6 1.8591 -2.0241 -1.4538 15 6 2.4239 -2.3325 -2.6321 16 6 2.9916 -1.0951 -3.1724 17 6 3.6908 -0.7768 -4.3407 18 6 4.0981 0.5081 -4.5618 19 6 3.8201 1.5061 -3.6381 20 6 3.1343 1.2146 -2.4722 21 7 2.8630 2.2256 -1.5450 22 6 2.7077 -0.0935 -2.2296 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6053 -1.7198 1.2952 27 1 3.1263 -0.7994 1.2057 28 1 2.9237 -1.8415 4.7318 29 1 1.3539 -2.7250 -0.8058 30 1 2.4541 -3.3083 -3.0942 31 1 3.9091 -1.5459 -5.0668 32 1 4.6376 0.7506 -5.4654 33 1 4.1448 2.5182 -3.8295 34 1 3.5185 2.9215 -1.3806 35 1 2.0179 2.2332 -1.0691 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695818536.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:37 Heat of formation + Delta-G solvation = 54.162434 kcal Electronic energy + Delta-G solvation = -17325.808474 eV Core-core repulsion = 14709.788743 eV Total energy + Delta-G solvation = -2616.019731 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.89704 -37.08993 -35.24053 -33.63839 -32.16540 -29.43600 -28.49249 -27.56038 -27.00656 -23.78955 -21.97054 -21.41324 -21.07569 -18.88139 -16.85263 -16.33091 -16.27829 -15.80615 -15.07522 -14.71400 -14.31744 -14.11091 -13.45210 -13.27492 -12.63614 -12.45229 -12.21793 -12.02403 -11.62431 -11.28086 -11.24288 -11.05928 -10.99775 -10.79731 -10.54368 -10.29978 -9.76610 -9.63445 -9.36387 -8.52332 -8.26936 -7.68200 -6.68300 -6.16376 -4.21360 1.67652 2.10991 3.21471 3.26453 3.28876 3.30503 3.48651 4.25638 4.32613 4.37100 5.18377 5.19667 5.30025 5.42777 5.44460 5.76656 5.79219 5.86237 5.97520 6.12049 6.21671 6.25967 6.40126 6.42218 6.62440 6.66418 6.76870 7.00215 7.19019 7.33803 7.40194 7.48599 7.67723 7.73941 7.92270 8.02391 8.10383 8.18517 8.83149 9.43503 10.94622 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.032531 B = 0.006142 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.508713 B = 4557.435204 C = 4926.106047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.124 3.876 3 H 0.092 0.908 4 C 0.022 3.978 5 C -0.524 4.524 6 H 0.059 0.941 7 C 0.061 3.939 8 N -0.889 5.889 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.457 5.457 14 C 0.075 3.925 15 C -0.235 4.235 16 C -0.084 4.084 17 C -0.119 4.119 18 C -0.118 4.118 19 C -0.184 4.184 20 C 0.202 3.798 21 N -0.897 5.897 22 C 0.052 3.948 23 H 0.055 0.945 24 H 0.082 0.918 25 H 0.039 0.961 26 H 0.023 0.977 27 H 0.022 0.978 28 H 0.263 0.737 29 H 0.162 0.838 30 H 0.139 0.861 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.393 0.607 35 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.791 3.455 -12.086 12.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 H 0.109 0.891 4 C -0.016 4.016 5 C -0.562 4.562 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.527 5.527 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.137 5.137 14 C -0.054 4.054 15 C -0.260 4.260 16 C -0.090 4.090 17 C -0.139 4.139 18 C -0.138 4.138 19 C -0.208 4.208 20 C 0.100 3.900 21 N -0.446 5.446 22 C -0.057 4.057 23 H 0.074 0.926 24 H 0.100 0.900 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.180 0.820 30 H 0.157 0.843 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.222 0.778 35 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.839 3.440 -11.678 12.203 hybrid contribution -0.241 0.621 1.296 1.457 sum -1.081 4.061 -10.383 11.201 Atomic orbital electron populations 1.22109 0.94877 1.02368 1.01483 1.22007 0.94277 0.97397 0.83982 0.89069 1.19414 0.97012 0.95903 0.89257 1.21006 1.36060 1.08681 0.90496 0.92316 1.24998 0.94858 0.95047 0.99221 1.69966 1.37947 1.20958 1.23850 0.86544 0.78338 0.80281 0.82561 1.20517 1.21106 1.19808 1.44567 1.45259 1.07122 1.16733 1.21771 1.01292 0.85088 0.97262 1.21489 1.09667 0.97105 0.97764 1.19064 1.01989 0.92968 0.94938 1.20004 1.01141 0.96295 0.96455 1.20249 1.01806 0.92734 0.99031 1.20387 1.08031 0.99189 0.93196 1.16757 0.98510 0.84746 0.90009 1.42439 1.22383 1.30956 1.48789 1.18285 1.03356 0.92946 0.91130 0.92559 0.89962 0.94203 0.95861 0.95920 0.92721 0.82042 0.84310 0.86994 0.86894 0.86630 0.77799 0.77493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.13 37.15 0.34 -2.32 16 2 C 0.12 2.47 2.83 -67.93 -0.19 2.28 16 3 H 0.09 1.77 4.75 -51.93 -0.25 1.52 16 4 C 0.02 0.53 4.32 -27.88 -0.12 0.41 16 5 C -0.52 -13.75 8.41 -34.44 -0.29 -14.04 16 6 H 0.06 1.46 7.06 -52.49 -0.37 1.09 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 9 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 13 N -0.46 -8.78 2.66 -107.22 -0.28 -9.06 16 14 C 0.08 1.35 10.29 -16.76 -0.17 1.18 16 15 C -0.24 -3.98 11.08 -37.67 -0.42 -4.40 16 16 C -0.08 -1.49 6.37 -105.15 -0.67 -2.16 16 17 C -0.12 -1.84 10.05 -39.58 -0.40 -2.23 16 18 C -0.12 -1.69 9.97 -39.97 -0.40 -2.09 16 19 C -0.18 -2.74 9.94 -39.33 -0.39 -3.13 16 20 C 0.20 3.40 6.76 -83.61 -0.57 2.83 16 21 N -0.90 -13.20 8.13 32.50 0.26 -12.94 16 22 C 0.05 0.98 6.82 -83.78 -0.57 0.41 16 23 H 0.06 0.98 8.02 -51.92 -0.42 0.56 16 24 H 0.08 1.48 6.95 -51.93 -0.36 1.11 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.02 0.60 7.80 -51.93 -0.41 0.20 16 27 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.16 2.67 7.89 -52.49 -0.41 2.25 16 30 H 0.14 1.96 8.06 -52.48 -0.42 1.54 16 31 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.39 4.90 8.96 -40.82 -0.37 4.54 16 35 H 0.39 5.80 6.60 -40.82 -0.27 5.53 16 LS Contribution 291.20 15.07 4.39 4.39 Total: -1.00 -29.65 291.20 -8.38 -38.03 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -4.52 Total: 10.64 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -3.94 Total: -21.69 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.72 Total: -47.04 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.65 -8.38 -38.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695818536.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.194 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds