Wall clock time and date at job start Mon Mar 30 2020 06:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47194 * 2 1 4 4 C 1.53005 * 109.47200 * 119.99626 * 2 1 3 5 5 C 1.50696 * 109.47372 * 295.00712 * 4 2 1 6 6 H 1.08000 * 119.99974 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00187 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99818 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00288 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47554 * 89.99409 * 9 7 5 11 11 H 1.48504 * 109.47199 * 209.99833 * 9 7 5 12 12 H 1.48503 * 109.46755 * 329.99430 * 9 7 5 13 13 N 1.46498 * 109.47402 * 239.99765 * 2 1 3 14 14 C 1.36745 * 125.08455 * 293.53327 * 13 2 1 15 15 C 1.34257 * 109.90411 * 180.02562 * 14 13 2 16 16 C 1.46475 * 107.01931 * 0.02562 * 15 14 13 17 17 C 1.39827 * 133.97161 * 180.02562 * 16 15 14 18 18 C 1.36593 * 119.89785 * 180.02562 * 17 16 15 19 19 C 1.38793 * 120.59234 * 359.75676 * 18 17 16 20 20 C 1.38373 * 120.57166 * 0.50036 * 19 18 17 21 21 N 1.39836 * 120.17213 * 179.76022 * 20 19 18 22 22 C 1.37836 * 125.07581 * 113.57393 * 13 2 1 23 23 H 1.09009 * 109.47139 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47653 * 299.99826 * 1 2 3 25 25 H 1.08999 * 109.47548 * 60.00354 * 1 2 3 26 26 H 1.09003 * 109.46592 * 55.00309 * 4 2 1 27 27 H 1.08997 * 109.47269 * 175.00186 * 4 2 1 28 28 H 0.96997 * 119.99691 * 180.02562 * 8 7 5 29 29 H 1.08001 * 125.04301 * 0.03597 * 14 13 2 30 30 H 1.08004 * 126.49490 * 180.02562 * 15 14 13 31 31 H 1.07997 * 120.04686 * 359.97427 * 17 16 15 32 32 H 1.08000 * 119.70735 * 180.02562 * 18 17 16 33 33 H 1.07999 * 119.71547 * 180.28969 * 19 18 17 34 34 H 0.97003 * 119.99471 * 322.56391 * 21 20 19 35 35 H 0.96994 * 120.00181 * 142.29267 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0804 0.9745 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6764 -1.5187 3.8512 9 14 1.4994 0.5634 5.2496 10 1 0.1723 0.0953 5.7238 11 1 2.5091 0.3536 6.3182 12 1 1.4245 2.0086 4.9163 13 7 2.0183 -0.6906 -1.1961 14 6 1.8591 -2.0241 -1.4538 15 6 2.4239 -2.3325 -2.6321 16 6 2.9916 -1.0951 -3.1724 17 6 3.6908 -0.7768 -4.3407 18 6 4.0981 0.5081 -4.5618 19 6 3.8201 1.5061 -3.6381 20 6 3.1343 1.2146 -2.4722 21 7 2.8630 2.2256 -1.5450 22 6 2.7077 -0.0935 -2.2296 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6053 -1.7198 1.2952 27 1 3.1263 -0.7994 1.2057 28 1 2.9237 -1.8415 4.7318 29 1 1.3539 -2.7250 -0.8058 30 1 2.4541 -3.3083 -3.0942 31 1 3.9091 -1.5459 -5.0668 32 1 4.6376 0.7506 -5.4654 33 1 4.1448 2.5182 -3.8295 34 1 3.5185 2.9215 -1.3806 35 1 2.0179 2.2332 -1.0691 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695818536.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:31 Heat of formation + Delta-G solvation = 37.699683 kcal Electronic energy + Delta-G solvation = -17326.522352 eV Core-core repulsion = 14709.788743 eV Total energy + Delta-G solvation = -2616.733609 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 4.11 seconds Orbital eigenvalues (eV) -42.21987 -38.38625 -36.73413 -35.16575 -33.91963 -30.84440 -29.76634 -29.18024 -28.46028 -25.64696 -23.23568 -22.87280 -22.46842 -20.25788 -18.73449 -17.67147 -17.52034 -17.30519 -16.57261 -16.29687 -15.76430 -15.36537 -14.97362 -14.75598 -14.19338 -14.03603 -13.67329 -13.49343 -13.15025 -12.88783 -12.76955 -12.57828 -12.47412 -12.28621 -12.13412 -11.86164 -11.38633 -11.36133 -11.04212 -10.61891 -9.56734 -8.99001 -8.26023 -7.92617 -6.37531 0.42949 0.87327 1.39853 1.40585 1.51226 1.92473 2.08252 2.39642 3.08677 3.10601 3.14085 3.86400 3.92690 4.07058 4.24062 4.28799 4.42565 4.54387 4.71675 4.81042 4.88217 4.92493 5.04851 5.12607 5.19482 5.21306 5.34647 5.46248 5.57686 5.70142 5.81862 5.98016 6.06099 6.13114 6.37467 6.54543 6.76961 6.78110 7.03111 7.32404 8.86849 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.032531 B = 0.006142 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.508713 B = 4557.435204 C = 4926.106047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.135 3.865 3 H 0.097 0.903 4 C 0.034 3.966 5 C -0.532 4.532 6 H 0.073 0.927 7 C 0.003 3.997 8 N -0.933 5.933 9 Si 0.967 3.033 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.259 1.259 13 N -0.469 5.469 14 C 0.047 3.953 15 C -0.229 4.229 16 C -0.107 4.107 17 C -0.126 4.126 18 C -0.114 4.114 19 C -0.179 4.179 20 C 0.180 3.820 21 N -0.894 5.894 22 C 0.022 3.978 23 H 0.052 0.948 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.000 1.000 27 H -0.021 1.021 28 H 0.264 0.736 29 H 0.164 0.836 30 H 0.164 0.836 31 H 0.136 0.864 32 H 0.149 0.851 33 H 0.142 0.858 34 H 0.403 0.597 35 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.948 4.997 -13.374 14.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.034 3.966 3 H 0.114 0.886 4 C -0.004 4.004 5 C -0.571 4.571 6 H 0.091 0.909 7 C -0.195 4.195 8 N -0.572 5.572 9 Si 0.791 3.209 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.183 1.183 13 N -0.150 5.150 14 C -0.081 4.081 15 C -0.254 4.254 16 C -0.113 4.113 17 C -0.146 4.146 18 C -0.133 4.133 19 C -0.203 4.203 20 C 0.077 3.923 21 N -0.443 5.443 22 C -0.086 4.086 23 H 0.071 0.929 24 H 0.098 0.902 25 H 0.079 0.921 26 H 0.018 0.982 27 H -0.003 1.003 28 H 0.072 0.928 29 H 0.182 0.818 30 H 0.182 0.818 31 H 0.154 0.846 32 H 0.167 0.833 33 H 0.159 0.841 34 H 0.234 0.766 35 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -0.997 4.995 -12.991 13.953 hybrid contribution -0.109 0.132 1.571 1.580 sum -1.106 5.127 -11.420 12.567 Atomic orbital electron populations 1.22008 0.93100 1.02475 1.02334 1.21695 0.95555 0.96835 0.82532 0.88577 1.19186 0.94044 0.95332 0.91792 1.21438 1.35488 1.09033 0.91102 0.90899 1.25961 0.94803 0.95971 1.02809 1.70118 1.39586 1.22939 1.24584 0.85420 0.77968 0.79339 0.78174 1.19641 1.21331 1.18317 1.44461 1.46328 1.07506 1.16707 1.22017 1.02745 0.85114 0.98265 1.21847 1.08286 0.98090 0.97132 1.19467 1.02863 0.92976 0.95954 1.20361 1.00534 0.97677 0.96047 1.20702 1.00758 0.91981 0.99871 1.20795 1.06530 1.00719 0.92260 1.17066 0.99394 0.84565 0.91233 1.42381 1.22593 1.30818 1.48540 1.18754 1.04182 0.94278 0.91417 0.92865 0.90183 0.92077 0.98213 1.00291 0.92764 0.81834 0.81827 0.84608 0.83350 0.84064 0.76633 0.77696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.96 9.13 71.98 0.66 -4.30 16 2 C 0.14 5.48 2.83 44.99 0.13 5.61 16 3 H 0.10 3.75 4.75 -2.39 -0.01 3.74 16 4 C 0.03 1.75 4.32 29.85 0.13 1.88 16 5 C -0.53 -28.32 8.41 25.60 0.22 -28.11 16 6 H 0.07 3.59 7.06 -2.91 -0.02 3.57 16 7 C 0.00 0.16 5.46 84.65 0.46 0.62 16 8 N -0.93 -55.66 13.29 21.45 0.28 -55.37 16 9 Si 0.97 42.45 29.54 68.60 2.03 44.48 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 13 N -0.47 -18.37 2.66 -493.13 -1.31 -19.68 16 14 C 0.05 1.72 10.29 83.02 0.85 2.58 16 15 C -0.23 -7.68 11.08 23.51 0.26 -7.42 16 16 C -0.11 -3.72 6.37 -20.21 -0.13 -3.85 16 17 C -0.13 -3.60 10.05 22.27 0.22 -3.37 16 18 C -0.11 -2.86 9.97 22.02 0.22 -2.64 16 19 C -0.18 -4.85 9.94 22.43 0.22 -4.63 16 20 C 0.18 5.85 6.76 38.25 0.26 6.11 16 21 N -0.89 -25.43 8.13 -51.10 -0.42 -25.84 16 22 C 0.02 0.82 6.82 39.10 0.27 1.09 16 23 H 0.05 1.87 8.02 -2.38 -0.02 1.85 16 24 H 0.08 2.81 6.95 -2.38 -0.02 2.80 16 25 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.00 -0.03 7.80 -2.39 -0.02 -0.04 16 27 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 28 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 29 H 0.16 5.71 7.89 -2.91 -0.02 5.69 16 30 H 0.16 4.44 8.06 -2.91 -0.02 4.42 16 31 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 32 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 33 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 34 H 0.40 9.53 8.96 -92.71 -0.83 8.70 16 35 H 0.39 11.28 6.60 -92.71 -0.61 10.66 16 Total: -1.00 -64.79 291.20 4.02 -60.77 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: -0.33 Total: 32.09 kcal Atomic # 6 Polarization: -40.20 SS G_CDS: 3.77 Total: -36.44 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -1.44 Total: -100.90 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -64.79 4.02 -60.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695818536.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.467 kcal (2) G-P(sol) polarization free energy of solvation -64.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.11 seconds