Wall clock time and date at job start Mon Mar 30 2020 05:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30112 * 124.95683 * 2 1 4 4 C 1.35783 * 109.64932 * 180.02562 * 3 2 1 5 5 C 1.39736 * 133.60342 * 179.97438 * 4 3 2 6 6 C 1.36598 * 119.88897 * 180.02562 * 5 4 3 7 7 C 1.38779 * 120.66640 * 359.97438 * 6 5 4 8 8 C 1.37848 * 120.45220 * 359.97438 * 7 6 5 9 9 C 1.38830 * 119.69136 * 0.05838 * 8 7 6 10 10 N 1.36041 * 124.95087 * 180.02562 * 2 1 3 11 11 C 1.46508 * 126.34374 * 359.97438 * 10 2 1 12 12 H 1.08991 * 109.47130 * 0.27115 * 11 10 2 13 13 C 1.53005 * 109.46803 * 120.27334 * 11 10 2 14 14 C 1.53003 * 109.46732 * 240.26916 * 11 10 2 15 15 C 1.50699 * 109.46734 * 175.00290 * 14 11 10 16 16 H 1.08000 * 120.00373 * 359.97438 * 15 14 11 17 17 C 1.37884 * 119.99734 * 180.02562 * 15 14 11 18 18 N 1.31511 * 119.99856 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99834 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46821 * 60.00300 * 19 17 15 21 21 H 1.48498 * 109.47196 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47319 * 300.00375 * 19 17 15 23 23 H 1.08998 * 109.46927 * 86.51847 * 1 2 3 24 24 H 1.08996 * 109.47343 * 206.52625 * 1 2 3 25 25 H 1.09009 * 109.46814 * 326.52634 * 1 2 3 26 26 H 1.08009 * 120.05135 * 359.97438 * 5 4 3 27 27 H 1.07999 * 119.66578 * 179.72654 * 6 5 4 28 28 H 1.08000 * 119.76943 * 179.97438 * 7 6 5 29 29 H 1.07998 * 120.15542 * 179.97438 * 8 7 6 30 30 H 1.08994 * 109.47387 * 65.54459 * 13 11 10 31 31 H 1.09000 * 109.46720 * 185.54470 * 13 11 10 32 32 H 1.08998 * 109.47077 * 305.53910 * 13 11 10 33 33 H 1.09002 * 109.46888 * 295.00304 * 14 11 10 34 34 H 1.09002 * 109.47067 * 55.00056 * 14 11 10 35 35 H 0.96999 * 119.99526 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2525 1.0664 0.0000 4 6 3.5621 0.7079 -0.0006 5 6 4.7588 1.4295 -0.0013 6 6 5.9532 0.7668 -0.0023 7 6 5.9931 -0.6205 -0.0021 8 6 4.8253 -1.3529 -0.0003 9 6 3.6019 -0.6966 0.0000 10 7 2.2863 -1.1150 -0.0005 11 6 1.8165 -2.5027 -0.0006 12 1 0.7267 -2.5173 -0.0051 13 6 2.3413 -3.2187 -1.2468 14 6 2.3310 -3.2154 1.2518 15 6 1.7484 -4.6038 1.3146 16 1 1.0779 -4.9438 0.5393 17 6 2.0706 -5.4398 2.3628 18 7 2.8867 -5.0256 3.3072 19 14 1.3479 -7.1605 2.4411 20 1 1.7560 -7.9241 1.2346 21 1 1.8474 -7.8523 3.6565 22 1 -0.1335 -7.0733 2.4941 23 1 -0.3633 0.0624 -1.0258 24 1 -0.3634 -0.9194 0.4589 25 1 -0.3633 0.8573 0.5669 26 1 4.7392 2.5094 -0.0019 27 1 6.8759 1.3280 -0.0073 28 1 6.9455 -1.1296 -0.0033 29 1 4.8619 -2.4323 -0.0006 30 1 3.4276 -3.2909 -1.1939 31 1 1.9127 -4.2196 -1.2982 32 1 2.0573 -2.6558 -2.1359 33 1 3.4185 -3.2790 1.2126 34 1 2.0315 -2.6551 2.1375 35 1 3.1130 -5.6136 4.0447 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695819775.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:31 Heat of formation + Delta-G solvation = 54.410918 kcal Electronic energy + Delta-G solvation = -17422.634789 eV Core-core repulsion = 14806.625833 eV Total energy + Delta-G solvation = -2616.008956 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.75019 -37.11497 -35.61632 -32.80140 -31.13647 -30.79352 -29.31741 -27.21158 -27.15929 -24.01826 -22.18862 -21.71525 -20.57327 -19.30940 -16.94984 -16.62650 -15.88026 -15.23085 -15.00082 -14.61338 -13.97703 -13.64006 -13.14029 -12.87886 -12.80069 -12.65077 -12.49810 -12.17362 -11.75039 -11.58503 -11.23875 -11.14422 -11.01052 -10.84104 -10.67648 -10.33036 -10.17332 -9.53846 -9.39264 -9.32192 -8.53575 -7.81145 -7.60354 -6.17645 -4.23417 1.38203 1.97614 3.15558 3.22043 3.22504 3.28278 3.30115 4.30045 4.31148 4.51079 4.92108 5.17093 5.26436 5.35442 5.43513 5.51606 5.62397 5.71376 5.76972 5.83536 5.90012 5.97293 6.03883 6.13039 6.33347 6.50284 6.59936 6.63357 6.89071 6.97459 7.00307 7.29881 7.37757 7.46449 7.64605 7.81993 8.12789 8.35300 8.81021 9.41717 10.93179 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025932 B = 0.006925 C = 0.006012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.471113 B = 4042.353021 C = 4656.510071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.275 3.725 3 N -0.511 5.511 4 C 0.040 3.960 5 C -0.076 4.076 6 C -0.133 4.133 7 C -0.119 4.119 8 C -0.094 4.094 9 C 0.059 3.941 10 N -0.468 5.468 11 C 0.130 3.870 12 H 0.092 0.908 13 C -0.147 4.147 14 C 0.020 3.980 15 C -0.527 4.527 16 H 0.060 0.940 17 C 0.062 3.938 18 N -0.888 5.888 19 Si 0.896 3.104 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.040 0.960 33 H 0.028 0.972 34 H 0.021 0.979 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.560 7.310 -7.422 10.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.010 3.990 3 N -0.232 5.232 4 C -0.079 4.079 5 C -0.096 4.096 6 C -0.154 4.154 7 C -0.138 4.138 8 C -0.114 4.114 9 C -0.052 4.052 10 N -0.156 5.156 11 C 0.029 3.971 12 H 0.110 0.890 13 C -0.205 4.205 14 C -0.017 4.017 15 C -0.565 4.565 16 H 0.078 0.922 17 C -0.141 4.141 18 N -0.525 5.525 19 Si 0.723 3.277 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.109 0.891 26 H 0.138 0.862 27 H 0.139 0.861 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.039 0.961 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.291 7.923 -7.252 10.745 hybrid contribution -0.033 -1.874 0.265 1.893 sum 0.257 6.049 -6.987 9.245 Atomic orbital electron populations 1.20342 0.84941 1.04495 1.03679 1.23526 0.95682 0.81270 0.98505 1.70336 1.00842 1.27573 1.24478 1.19065 0.92052 0.90611 1.06165 1.19852 0.89369 0.99092 1.01261 1.20510 0.97037 0.94347 1.03475 1.20802 0.97139 0.93857 1.02048 1.20224 0.89214 1.00016 1.01957 1.18838 0.85902 0.94646 1.05766 1.45934 1.04268 1.08193 1.57196 1.21948 0.99505 0.75890 0.99737 0.88973 1.22046 1.02091 1.01173 0.95200 1.19457 0.97512 0.94907 0.89873 1.20961 1.29085 0.97801 1.08699 0.92218 1.25000 0.94950 0.98690 0.95421 1.69960 1.34298 1.36723 1.11558 0.86594 0.79483 0.84003 0.77585 1.20089 1.21159 1.20094 0.89874 0.89885 0.89106 0.86160 0.86075 0.85829 0.85545 0.92309 0.89877 0.94042 0.95418 0.96069 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.08 36.00 0.36 -0.65 16 2 C 0.28 5.01 7.85 -154.82 -1.22 3.79 16 3 N -0.51 -10.01 11.27 -8.23 -0.09 -10.10 16 4 C 0.04 0.79 7.23 -84.70 -0.61 0.18 16 5 C -0.08 -1.25 10.05 -39.61 -0.40 -1.65 16 6 C -0.13 -1.94 9.96 -39.97 -0.40 -2.34 16 7 C -0.12 -1.83 10.03 -39.52 -0.40 -2.23 16 8 C -0.09 -1.72 8.98 -39.51 -0.35 -2.07 16 9 C 0.06 1.18 6.24 -83.99 -0.52 0.65 16 10 N -0.47 -9.12 2.65 -104.10 -0.28 -9.40 16 11 C 0.13 2.54 2.92 -67.92 -0.20 2.34 16 12 H 0.09 1.67 6.54 -51.93 -0.34 1.33 16 13 C -0.15 -2.60 8.91 37.16 0.33 -2.27 16 14 C 0.02 0.49 4.46 -27.88 -0.12 0.37 16 15 C -0.53 -13.66 8.48 -34.44 -0.29 -13.95 16 16 H 0.06 1.46 7.06 -52.49 -0.37 1.09 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 19 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.08 1.06 6.88 -51.93 -0.36 0.71 16 25 H 0.09 1.08 8.14 -51.92 -0.42 0.66 16 26 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 27 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.13 2.36 5.97 -52.49 -0.31 2.05 16 30 H 0.06 1.06 6.47 -51.93 -0.34 0.72 16 31 H 0.08 1.46 7.12 -51.93 -0.37 1.09 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.03 0.72 6.51 -51.93 -0.34 0.39 16 34 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 290.32 15.07 4.38 4.38 Total: -1.00 -30.57 290.32 -8.72 -39.29 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -4.52 Total: 1.46 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -3.92 Total: -16.24 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.37 Total: -44.35 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.57 -8.72 -39.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695819775.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.699 kcal (2) G-P(sol) polarization free energy of solvation -30.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds