Wall clock time and date at job start Mon Mar 30 2020 05:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30112 * 124.95683 * 2 1 4 4 C 1.35783 * 109.64932 * 180.02562 * 3 2 1 5 5 C 1.39736 * 133.60342 * 179.97438 * 4 3 2 6 6 C 1.36598 * 119.88897 * 180.02562 * 5 4 3 7 7 C 1.38779 * 120.66640 * 359.97438 * 6 5 4 8 8 C 1.37848 * 120.45220 * 359.97438 * 7 6 5 9 9 C 1.38830 * 119.69136 * 0.05838 * 8 7 6 10 10 N 1.36041 * 124.95087 * 180.02562 * 2 1 3 11 11 C 1.46508 * 126.34374 * 359.97438 * 10 2 1 12 12 H 1.08991 * 109.47130 * 0.27115 * 11 10 2 13 13 C 1.53005 * 109.46803 * 120.27334 * 11 10 2 14 14 C 1.53003 * 109.46732 * 240.26916 * 11 10 2 15 15 C 1.50699 * 109.46734 * 175.00290 * 14 11 10 16 16 H 1.08000 * 120.00373 * 359.97438 * 15 14 11 17 17 C 1.37884 * 119.99734 * 180.02562 * 15 14 11 18 18 N 1.31511 * 119.99856 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99834 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46821 * 60.00300 * 19 17 15 21 21 H 1.48498 * 109.47196 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47319 * 300.00375 * 19 17 15 23 23 H 1.08998 * 109.46927 * 86.51847 * 1 2 3 24 24 H 1.08996 * 109.47343 * 206.52625 * 1 2 3 25 25 H 1.09009 * 109.46814 * 326.52634 * 1 2 3 26 26 H 1.08009 * 120.05135 * 359.97438 * 5 4 3 27 27 H 1.07999 * 119.66578 * 179.72654 * 6 5 4 28 28 H 1.08000 * 119.76943 * 179.97438 * 7 6 5 29 29 H 1.07998 * 120.15542 * 179.97438 * 8 7 6 30 30 H 1.08994 * 109.47387 * 65.54459 * 13 11 10 31 31 H 1.09000 * 109.46720 * 185.54470 * 13 11 10 32 32 H 1.08998 * 109.47077 * 305.53910 * 13 11 10 33 33 H 1.09002 * 109.46888 * 295.00304 * 14 11 10 34 34 H 1.09002 * 109.47067 * 55.00056 * 14 11 10 35 35 H 0.96999 * 119.99526 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2525 1.0664 0.0000 4 6 3.5621 0.7079 -0.0006 5 6 4.7588 1.4295 -0.0013 6 6 5.9532 0.7668 -0.0023 7 6 5.9931 -0.6205 -0.0021 8 6 4.8253 -1.3529 -0.0003 9 6 3.6019 -0.6966 0.0000 10 7 2.2863 -1.1150 -0.0005 11 6 1.8165 -2.5027 -0.0006 12 1 0.7267 -2.5173 -0.0051 13 6 2.3413 -3.2187 -1.2468 14 6 2.3310 -3.2154 1.2518 15 6 1.7484 -4.6038 1.3146 16 1 1.0779 -4.9438 0.5393 17 6 2.0706 -5.4398 2.3628 18 7 2.8867 -5.0256 3.3072 19 14 1.3479 -7.1605 2.4411 20 1 1.7560 -7.9241 1.2346 21 1 1.8474 -7.8523 3.6565 22 1 -0.1335 -7.0733 2.4941 23 1 -0.3633 0.0624 -1.0258 24 1 -0.3634 -0.9194 0.4589 25 1 -0.3633 0.8573 0.5669 26 1 4.7392 2.5094 -0.0019 27 1 6.8759 1.3280 -0.0073 28 1 6.9455 -1.1296 -0.0033 29 1 4.8619 -2.4323 -0.0006 30 1 3.4276 -3.2909 -1.1939 31 1 1.9127 -4.2196 -1.2982 32 1 2.0573 -2.6558 -2.1359 33 1 3.4185 -3.2790 1.2126 34 1 2.0315 -2.6551 2.1375 35 1 3.1130 -5.6136 4.0447 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695819775.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:31 Heat of formation + Delta-G solvation = 37.917476 kcal Electronic energy + Delta-G solvation = -17423.349998 eV Core-core repulsion = 14806.625833 eV Total energy + Delta-G solvation = -2616.724165 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.13147 -38.43948 -37.21262 -34.72472 -32.46872 -32.17377 -30.74689 -28.99314 -28.40072 -25.82904 -23.70045 -23.03183 -22.08050 -20.75416 -18.63295 -18.17160 -17.45592 -16.75638 -16.41748 -16.19056 -15.47337 -15.12605 -14.55396 -14.43971 -14.11955 -13.95445 -13.89654 -13.56317 -13.31120 -12.95803 -12.80817 -12.75836 -12.50596 -12.34432 -12.29161 -11.99195 -11.80807 -11.34076 -11.06986 -10.85380 -10.60236 -9.16845 -8.97226 -8.24403 -6.37282 0.05763 0.65414 1.41419 1.43725 1.51420 1.76290 1.85108 2.39474 2.96791 3.10220 3.26885 3.59807 3.77182 4.11664 4.16343 4.19784 4.35175 4.40273 4.48939 4.56572 4.66310 4.70048 4.80735 4.90794 4.97323 5.01912 5.16607 5.27264 5.33395 5.43565 5.61079 5.61642 5.70541 5.72441 6.02520 6.05834 6.33924 6.77222 6.95085 7.32995 8.87433 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025932 B = 0.006925 C = 0.006012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.471113 B = 4042.353021 C = 4656.510071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.267 3.733 3 N -0.531 5.531 4 C 0.013 3.987 5 C -0.085 4.085 6 C -0.121 4.121 7 C -0.110 4.110 8 C -0.122 4.122 9 C 0.029 3.971 10 N -0.480 5.480 11 C 0.140 3.860 12 H 0.109 0.891 13 C -0.138 4.138 14 C 0.033 3.967 15 C -0.534 4.534 16 H 0.077 0.923 17 C 0.003 3.997 18 N -0.932 5.932 19 Si 0.967 3.033 20 H -0.263 1.263 21 H -0.290 1.290 22 H -0.264 1.264 23 H 0.110 0.890 24 H 0.085 0.915 25 H 0.104 0.896 26 H 0.142 0.858 27 H 0.165 0.835 28 H 0.154 0.846 29 H 0.110 0.890 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.062 0.938 33 H -0.001 1.001 34 H -0.021 1.021 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.311 7.400 -8.672 11.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.002 3.998 3 N -0.253 5.253 4 C -0.106 4.106 5 C -0.104 4.104 6 C -0.141 4.141 7 C -0.129 4.129 8 C -0.143 4.143 9 C -0.080 4.080 10 N -0.169 5.169 11 C 0.039 3.961 12 H 0.127 0.873 13 C -0.196 4.196 14 C -0.005 4.005 15 C -0.572 4.572 16 H 0.095 0.905 17 C -0.195 4.195 18 N -0.572 5.572 19 Si 0.791 3.209 20 H -0.188 1.188 21 H -0.215 1.215 22 H -0.188 1.188 23 H 0.128 0.872 24 H 0.104 0.896 25 H 0.122 0.878 26 H 0.159 0.841 27 H 0.183 0.817 28 H 0.172 0.828 29 H 0.128 0.872 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.018 0.982 34 H -0.003 1.003 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.041 8.029 -8.524 11.710 hybrid contribution 0.139 -1.811 0.669 1.935 sum 0.180 6.218 -7.856 10.020 Atomic orbital electron populations 1.20546 0.81784 1.05219 1.05659 1.24432 0.97461 0.80594 0.97352 1.70332 1.01205 1.28190 1.25587 1.19579 0.93005 0.90858 1.07140 1.20274 0.89011 1.00305 1.00831 1.20981 0.98087 0.94011 1.00999 1.21246 0.97304 0.94620 0.99736 1.20342 0.90157 0.99593 1.04200 1.19214 0.86464 0.95382 1.06986 1.45942 1.04578 1.08181 1.58160 1.21700 1.00217 0.76145 0.98034 0.87277 1.21952 1.01293 1.01314 0.95031 1.19210 0.95753 0.94787 0.90729 1.21414 1.28683 0.98295 1.08796 0.90503 1.25973 0.95304 1.03157 0.95083 1.70123 1.36221 1.38371 1.12474 0.85463 0.79056 0.78683 0.77651 1.18807 1.21546 1.18847 0.87206 0.89587 0.87775 0.84055 0.81743 0.82829 0.87151 0.93455 0.89599 0.91871 0.98225 1.00268 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.86 10.08 71.24 0.72 -1.14 16 2 C 0.27 9.66 7.85 137.92 1.08 10.74 16 3 N -0.53 -20.81 11.27 -179.96 -2.03 -22.84 16 4 C 0.01 0.50 7.23 39.45 0.29 0.78 16 5 C -0.08 -2.66 10.05 22.25 0.22 -2.44 16 6 C -0.12 -3.21 9.96 22.02 0.22 -2.99 16 7 C -0.11 -3.25 10.03 22.31 0.22 -3.03 16 8 C -0.12 -4.60 8.98 22.32 0.20 -4.40 16 9 C 0.03 1.19 6.24 38.86 0.24 1.43 16 10 N -0.48 -19.01 2.65 -483.28 -1.28 -20.29 16 11 C 0.14 5.53 2.92 44.99 0.13 5.66 16 12 H 0.11 3.88 6.54 -2.39 -0.02 3.86 16 13 C -0.14 -4.82 8.91 71.98 0.64 -4.18 16 14 C 0.03 1.67 4.46 29.85 0.13 1.80 16 15 C -0.53 -27.89 8.48 25.60 0.22 -27.67 16 16 H 0.08 3.67 7.06 -2.91 -0.02 3.65 16 17 C 0.00 0.18 5.46 84.66 0.46 0.65 16 18 N -0.93 -55.39 13.29 21.45 0.28 -55.10 16 19 Si 0.97 41.90 29.54 68.60 2.03 43.93 16 20 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 21 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 23 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 24 H 0.09 2.09 6.88 -2.39 -0.02 2.08 16 25 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 26 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 27 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 28 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 29 H 0.11 4.39 5.97 -2.91 -0.02 4.37 16 30 H 0.05 1.74 6.47 -2.39 -0.02 1.72 16 31 H 0.09 2.91 7.12 -2.39 -0.02 2.89 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.00 -0.03 6.51 -2.39 -0.02 -0.05 16 34 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 35 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -68.34 290.32 4.87 -63.47 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 1.08 Total: 15.62 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 4.78 Total: -24.78 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -3.03 Total: -98.24 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -68.34 4.87 -63.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695819775.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.388 kcal (2) G-P(sol) polarization free energy of solvation -68.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds