Wall clock time and date at job start Mon Mar 30 2020 06:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47094 * 2 1 4 4 C 1.52994 * 109.47420 * 120.00402 * 2 1 3 5 5 C 1.50701 * 109.46961 * 294.99938 * 4 2 1 6 6 H 1.08000 * 120.00185 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99864 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00172 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99865 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46994 * 89.99997 * 9 7 5 11 11 H 1.48502 * 109.47120 * 210.00253 * 9 7 5 12 12 H 1.48505 * 109.47132 * 330.00142 * 9 7 5 13 13 N 1.46500 * 109.46842 * 240.00311 * 2 1 3 14 14 C 1.36994 * 125.07571 * 299.99877 * 13 2 1 15 15 C 1.34185 * 109.91672 * 180.02562 * 14 13 2 16 16 C 1.46571 * 107.01481 * 359.97438 * 15 14 13 17 17 C 1.39662 * 133.91152 * 179.97438 * 16 15 14 18 18 C 1.36522 * 119.86950 * 180.02562 * 17 16 15 19 19 C 1.39445 * 120.45756 * 359.68558 * 18 17 16 20 20 N 1.39799 * 119.75268 * 180.31841 * 19 18 17 21 21 C 1.38379 * 120.49850 * 0.61961 * 19 18 17 22 22 C 1.37709 * 125.07106 * 119.99977 * 13 2 1 23 23 H 1.09001 * 109.47569 * 299.99428 * 1 2 3 24 24 H 1.08996 * 109.47523 * 59.99736 * 1 2 3 25 25 H 1.09000 * 109.47094 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47520 * 54.99702 * 4 2 1 27 27 H 1.08998 * 109.47436 * 175.00353 * 4 2 1 28 28 H 0.97003 * 120.00065 * 180.02562 * 8 7 5 29 29 H 1.07998 * 125.04072 * 359.96286 * 14 13 2 30 30 H 1.08000 * 126.48858 * 179.97438 * 15 14 13 31 31 H 1.08000 * 120.06893 * 0.04667 * 17 16 15 32 32 H 1.08003 * 119.77162 * 180.02562 * 18 17 16 33 33 H 0.97003 * 120.00227 * 180.29245 * 20 19 18 34 34 H 0.96996 * 119.99783 * 0.29258 * 20 19 18 35 35 H 1.08002 * 120.14336 * 179.68459 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6414 0.0569 2.4765 6 1 1.0800 0.9740 2.3757 7 6 1.9925 -0.4024 3.7282 8 7 2.6756 -1.5194 3.8510 9 14 1.4977 0.5619 5.2497 10 1 0.1703 0.0934 5.7227 11 1 2.5067 0.3517 6.3188 12 1 1.4228 2.0073 4.9170 13 7 2.0182 -0.6906 -1.1962 14 6 1.7521 -1.9959 -1.5154 15 6 2.3496 -2.3142 -2.6740 16 6 3.0558 -1.1157 -3.1357 17 6 3.8431 -0.8251 -4.2521 18 6 4.3761 0.4228 -4.4020 19 6 4.1349 1.4134 -3.4507 20 7 4.6825 2.6881 -3.6223 21 6 3.3626 1.1424 -2.3349 22 6 2.8133 -0.1243 -2.1677 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6054 -1.7198 1.2951 27 1 3.1263 -0.7995 1.2055 28 1 2.9223 -1.8428 4.7317 29 1 1.1514 -2.6693 -0.9220 30 1 2.3164 -3.2720 -3.1718 31 1 4.0296 -1.5859 -4.9956 32 1 4.9843 0.6459 -5.2661 33 1 4.5206 3.3787 -2.9606 34 1 5.2245 2.8820 -4.4030 35 1 3.1836 1.9125 -1.5991 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695819914.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:44 Heat of formation + Delta-G solvation = 46.246417 kcal Electronic energy + Delta-G solvation = -17012.047847 eV Core-core repulsion = 14395.684852 eV Total energy + Delta-G solvation = -2616.362995 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 6.10 seconds Orbital eigenvalues (eV) -40.74610 -37.52313 -34.96646 -33.10434 -32.08520 -30.58421 -28.32828 -27.03550 -26.90248 -23.83310 -22.27812 -21.19936 -20.93089 -18.76767 -16.98479 -16.54770 -16.17372 -15.80163 -14.94130 -14.68184 -14.14263 -13.82211 -13.29394 -13.07284 -12.85944 -12.62069 -12.43155 -12.05608 -11.72501 -11.49695 -11.32486 -11.00762 -10.94804 -10.58416 -10.46338 -10.16985 -9.93381 -9.40862 -9.30274 -8.76133 -8.47711 -7.32713 -6.71082 -6.11605 -4.16111 1.66967 2.21736 3.24944 3.31332 3.33147 3.35486 3.51844 4.14163 4.37161 4.40922 5.13726 5.24255 5.38790 5.40536 5.60681 5.82031 5.86648 5.90524 5.96542 6.07544 6.12112 6.34168 6.40113 6.54694 6.63761 6.69137 6.74566 6.94190 7.07040 7.38533 7.46064 7.53537 7.69463 7.80709 7.91500 7.97064 8.05277 8.24932 8.88837 9.48445 10.99496 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028340 B = 0.005772 C = 0.005257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.772035 B = 4849.798738 C = 5325.438693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.133 3.867 3 H 0.082 0.918 4 C 0.020 3.980 5 C -0.523 4.523 6 H 0.059 0.941 7 C 0.061 3.939 8 N -0.890 5.890 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.467 5.467 14 C 0.059 3.941 15 C -0.218 4.218 16 C -0.159 4.159 17 C -0.032 4.032 18 C -0.217 4.217 19 C 0.223 3.777 20 N -0.884 5.884 21 C -0.215 4.215 22 C 0.147 3.853 23 H 0.080 0.920 24 H 0.040 0.960 25 H 0.054 0.946 26 H 0.023 0.977 27 H 0.022 0.978 28 H 0.263 0.737 29 H 0.160 0.840 30 H 0.137 0.863 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.395 0.605 34 H 0.394 0.606 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.630 3.802 -13.819 14.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.032 3.968 3 H 0.101 0.899 4 C -0.017 4.017 5 C -0.562 4.562 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.528 5.528 9 Si 0.722 3.278 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.148 5.148 14 C -0.067 4.067 15 C -0.243 4.243 16 C -0.165 4.165 17 C -0.051 4.051 18 C -0.239 4.239 19 C 0.119 3.881 20 N -0.424 5.424 21 C -0.241 4.241 22 C 0.038 3.962 23 H 0.099 0.901 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.177 0.823 30 H 0.155 0.845 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.222 0.778 34 H 0.221 0.779 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.544 3.757 -13.372 13.901 hybrid contribution -0.034 0.762 1.017 1.271 sum 0.509 4.519 -12.356 13.166 Atomic orbital electron populations 1.22041 0.94740 1.02133 1.01521 1.21766 0.94414 0.96801 0.83804 0.89940 1.19434 0.97026 0.95935 0.89343 1.21044 1.35915 1.08671 0.90539 0.92283 1.24998 0.94913 0.95045 0.99193 1.69967 1.38098 1.20984 1.23777 0.86554 0.78319 0.80323 0.82593 1.20533 1.21130 1.19801 1.44649 1.41328 1.09794 1.19055 1.21684 1.02109 0.85709 0.97173 1.21450 1.06442 0.97812 0.98562 1.19046 1.05646 0.94560 0.97215 1.19926 0.94422 0.95435 0.95324 1.19995 1.08981 0.93821 1.01152 1.17217 0.92413 0.85419 0.93073 1.42361 1.60343 1.10672 1.29018 1.19190 1.08560 0.95710 1.00681 1.17937 0.94789 0.93811 0.89695 0.90078 0.94126 0.92670 0.95824 0.95934 0.92773 0.82268 0.84539 0.86624 0.86896 0.77784 0.77906 0.86822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.04 37.16 0.34 -2.34 16 2 C 0.13 2.74 2.95 -67.94 -0.20 2.54 16 3 H 0.08 1.71 7.33 -51.93 -0.38 1.33 16 4 C 0.02 0.51 4.43 -27.89 -0.12 0.38 16 5 C -0.52 -14.05 8.41 -34.44 -0.29 -14.34 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 9 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 13 N -0.47 -9.22 2.66 -107.33 -0.29 -9.50 16 14 C 0.06 1.08 10.26 -16.67 -0.17 0.91 16 15 C -0.22 -3.70 11.08 -37.65 -0.42 -4.11 16 16 C -0.16 -2.84 6.37 -105.09 -0.67 -3.51 16 17 C -0.03 -0.48 10.04 -39.67 -0.40 -0.88 16 18 C -0.22 -3.07 9.81 -39.75 -0.39 -3.46 16 19 C 0.22 3.30 6.75 -83.72 -0.56 2.74 16 20 N -0.88 -9.67 9.09 32.44 0.29 -9.38 16 21 C -0.21 -3.73 9.64 -39.22 -0.38 -4.11 16 22 C 0.15 2.83 6.81 -84.00 -0.57 2.25 16 23 H 0.08 1.51 6.95 -51.93 -0.36 1.15 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.98 7.89 -51.93 -0.41 0.57 16 26 H 0.02 0.62 8.04 -51.93 -0.42 0.21 16 27 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.16 2.63 8.06 -52.49 -0.42 2.21 16 30 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 31 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 32 H 0.11 1.28 8.06 -52.48 -0.42 0.85 16 33 H 0.39 3.84 8.83 -40.82 -0.36 3.48 16 34 H 0.39 3.33 8.84 -40.82 -0.36 2.96 16 35 H 0.11 1.91 7.56 -52.49 -0.40 1.51 16 LS Contribution 296.25 15.07 4.46 4.46 Total: -1.00 -30.60 296.25 -8.47 -39.08 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -4.73 Total: 7.13 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -3.94 Total: -22.34 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.75 Total: -44.31 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.60 -8.47 -39.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695819914.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.322 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.10 seconds