Wall clock time and date at job start Mon Mar 30 2020 06:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47094 * 2 1 4 4 C 1.52994 * 109.47420 * 120.00402 * 2 1 3 5 5 C 1.50701 * 109.46961 * 294.99938 * 4 2 1 6 6 H 1.08000 * 120.00185 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99864 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00172 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99865 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46994 * 89.99997 * 9 7 5 11 11 H 1.48502 * 109.47120 * 210.00253 * 9 7 5 12 12 H 1.48505 * 109.47132 * 330.00142 * 9 7 5 13 13 N 1.46500 * 109.46842 * 240.00311 * 2 1 3 14 14 C 1.36994 * 125.07571 * 299.99877 * 13 2 1 15 15 C 1.34185 * 109.91672 * 180.02562 * 14 13 2 16 16 C 1.46571 * 107.01481 * 359.97438 * 15 14 13 17 17 C 1.39662 * 133.91152 * 179.97438 * 16 15 14 18 18 C 1.36522 * 119.86950 * 180.02562 * 17 16 15 19 19 C 1.39445 * 120.45756 * 359.68558 * 18 17 16 20 20 N 1.39799 * 119.75268 * 180.31841 * 19 18 17 21 21 C 1.38379 * 120.49850 * 0.61961 * 19 18 17 22 22 C 1.37709 * 125.07106 * 119.99977 * 13 2 1 23 23 H 1.09001 * 109.47569 * 299.99428 * 1 2 3 24 24 H 1.08996 * 109.47523 * 59.99736 * 1 2 3 25 25 H 1.09000 * 109.47094 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47520 * 54.99702 * 4 2 1 27 27 H 1.08998 * 109.47436 * 175.00353 * 4 2 1 28 28 H 0.97003 * 120.00065 * 180.02562 * 8 7 5 29 29 H 1.07998 * 125.04072 * 359.96286 * 14 13 2 30 30 H 1.08000 * 126.48858 * 179.97438 * 15 14 13 31 31 H 1.08000 * 120.06893 * 0.04667 * 17 16 15 32 32 H 1.08003 * 119.77162 * 180.02562 * 18 17 16 33 33 H 0.97003 * 120.00227 * 180.29245 * 20 19 18 34 34 H 0.96996 * 119.99783 * 0.29258 * 20 19 18 35 35 H 1.08002 * 120.14336 * 179.68459 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6414 0.0569 2.4765 6 1 1.0800 0.9740 2.3757 7 6 1.9925 -0.4024 3.7282 8 7 2.6756 -1.5194 3.8510 9 14 1.4977 0.5619 5.2497 10 1 0.1703 0.0934 5.7227 11 1 2.5067 0.3517 6.3188 12 1 1.4228 2.0073 4.9170 13 7 2.0182 -0.6906 -1.1962 14 6 1.7521 -1.9959 -1.5154 15 6 2.3496 -2.3142 -2.6740 16 6 3.0558 -1.1157 -3.1357 17 6 3.8431 -0.8251 -4.2521 18 6 4.3761 0.4228 -4.4020 19 6 4.1349 1.4134 -3.4507 20 7 4.6825 2.6881 -3.6223 21 6 3.3626 1.1424 -2.3349 22 6 2.8133 -0.1243 -2.1677 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6054 -1.7198 1.2951 27 1 3.1263 -0.7995 1.2055 28 1 2.9223 -1.8428 4.7317 29 1 1.1514 -2.6693 -0.9220 30 1 2.3164 -3.2720 -3.1718 31 1 4.0296 -1.5859 -4.9956 32 1 4.9843 0.6459 -5.2661 33 1 4.5206 3.3787 -2.9606 34 1 5.2245 2.8820 -4.4030 35 1 3.1836 1.9125 -1.5991 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695819914.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:44 Heat of formation + Delta-G solvation = 28.503107 kcal Electronic energy + Delta-G solvation = -17012.817255 eV Core-core repulsion = 14395.684852 eV Total energy + Delta-G solvation = -2617.132403 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.07878 -38.77156 -36.59088 -34.67831 -33.67173 -31.90465 -29.85446 -28.78499 -28.11336 -25.70302 -23.61152 -22.77661 -22.16994 -20.17794 -18.77750 -17.88652 -17.59973 -17.04836 -16.59772 -16.17316 -15.60753 -15.33205 -14.74589 -14.44421 -14.27957 -14.11332 -13.86905 -13.60872 -13.31555 -12.96045 -12.83208 -12.75830 -12.54063 -12.35827 -11.95067 -11.78960 -11.52484 -11.34451 -10.84603 -10.61688 -10.03756 -8.63767 -8.24320 -7.92713 -6.36899 0.43866 0.96300 1.39763 1.40924 1.51742 1.98980 2.11407 2.40398 3.09630 3.13475 3.16253 3.85069 3.96102 4.12553 4.26868 4.34196 4.43934 4.55675 4.67307 4.76429 4.84120 4.96095 4.99579 5.14059 5.21461 5.22762 5.36479 5.45321 5.47605 5.70879 5.73014 5.93193 6.07714 6.12222 6.45673 6.61485 6.73649 6.78868 7.13171 7.32795 8.87672 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028340 B = 0.005772 C = 0.005257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.772035 B = 4849.798738 C = 5325.438693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.145 3.855 3 H 0.077 0.923 4 C 0.034 3.966 5 C -0.535 4.535 6 H 0.070 0.930 7 C 0.003 3.997 8 N -0.932 5.932 9 Si 0.967 3.033 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.261 1.261 13 N -0.481 5.481 14 C 0.026 3.974 15 C -0.206 4.206 16 C -0.187 4.187 17 C -0.029 4.029 18 C -0.216 4.216 19 C 0.233 3.767 20 N -0.867 5.867 21 C -0.249 4.249 22 C 0.119 3.881 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.001 0.999 27 H -0.021 1.021 28 H 0.264 0.736 29 H 0.164 0.836 30 H 0.165 0.835 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.402 0.598 34 H 0.409 0.591 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.749 5.009 -15.407 16.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.043 3.957 3 H 0.095 0.905 4 C -0.004 4.004 5 C -0.573 4.573 6 H 0.089 0.911 7 C -0.195 4.195 8 N -0.572 5.572 9 Si 0.792 3.208 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.185 1.185 13 N -0.163 5.163 14 C -0.098 4.098 15 C -0.230 4.230 16 C -0.192 4.192 17 C -0.048 4.048 18 C -0.238 4.238 19 C 0.127 3.873 20 N -0.408 5.408 21 C -0.277 4.277 22 C 0.010 3.990 23 H 0.095 0.905 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.020 0.980 27 H -0.002 1.002 28 H 0.073 0.927 29 H 0.181 0.819 30 H 0.183 0.817 31 H 0.165 0.835 32 H 0.167 0.833 33 H 0.230 0.770 34 H 0.240 0.760 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.674 4.998 -15.000 15.825 hybrid contribution 0.054 0.427 1.366 1.432 sum 0.728 5.425 -13.634 14.692 Atomic orbital electron populations 1.21926 0.92770 1.02468 1.02203 1.21395 0.95826 0.95764 0.82709 0.90485 1.19204 0.94104 0.95365 0.91747 1.21458 1.35567 1.09021 0.91261 0.91145 1.25969 0.94782 0.95986 1.02795 1.70116 1.39578 1.22903 1.24614 0.85411 0.78084 0.79236 0.78115 1.19486 1.21117 1.18502 1.44551 1.42427 1.10424 1.18944 1.21949 1.03858 0.85623 0.98409 1.21830 1.04763 0.98673 0.97754 1.19413 1.07089 0.94472 0.98261 1.20334 0.93022 0.96667 0.94801 1.20424 1.08505 0.93096 1.01739 1.17394 0.90949 0.86896 0.92074 1.42351 1.59342 1.09445 1.29672 1.19325 1.10764 0.95385 1.02208 1.18385 0.95358 0.95058 0.90189 0.90479 0.92144 0.92529 0.98027 1.00229 0.92709 0.81854 0.81736 0.83541 0.83294 0.76971 0.76030 0.87522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.02 9.04 71.98 0.65 -4.36 16 2 C 0.14 6.21 2.95 44.99 0.13 6.34 16 3 H 0.08 3.33 7.33 -2.39 -0.02 3.31 16 4 C 0.03 1.78 4.43 29.85 0.13 1.91 16 5 C -0.53 -29.42 8.41 25.60 0.22 -29.20 16 6 H 0.07 3.63 7.06 -2.91 -0.02 3.61 16 7 C 0.00 0.17 5.46 84.66 0.46 0.63 16 8 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 9 Si 0.97 43.31 29.54 68.60 2.03 45.34 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 11 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 13 N -0.48 -19.65 2.66 -493.48 -1.31 -20.96 16 14 C 0.03 0.98 10.26 82.96 0.85 1.84 16 15 C -0.21 -6.89 11.08 23.52 0.26 -6.63 16 16 C -0.19 -6.51 6.37 -20.17 -0.13 -6.64 16 17 C -0.03 -0.81 10.04 22.21 0.22 -0.59 16 18 C -0.22 -5.39 9.81 22.16 0.22 -5.17 16 19 C 0.23 6.47 6.75 38.19 0.26 6.72 16 20 N -0.87 -16.70 9.09 -51.29 -0.47 -17.16 16 21 C -0.25 -8.70 9.64 22.50 0.22 -8.48 16 22 C 0.12 4.62 6.81 39.02 0.27 4.89 16 23 H 0.08 2.87 6.95 -2.39 -0.02 2.85 16 24 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.06 2.04 7.89 -2.39 -0.02 2.02 16 26 H 0.00 0.08 8.04 -2.39 -0.02 0.06 16 27 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 28 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 29 H 0.16 5.69 8.06 -2.91 -0.02 5.66 16 30 H 0.17 4.36 8.06 -2.91 -0.02 4.34 16 31 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 32 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.40 6.98 8.83 -92.71 -0.82 6.16 16 34 H 0.41 5.45 8.84 -92.71 -0.82 4.63 16 35 H 0.11 3.70 7.56 -2.91 -0.02 3.68 16 Total: -1.00 -67.81 296.25 3.76 -64.05 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: -0.54 Total: 23.70 kcal Atomic # 6 Polarization: -42.50 SS G_CDS: 3.76 Total: -38.74 kcal Atomic # 7 Polarization: -92.87 SS G_CDS: -1.49 Total: -94.36 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -67.81 3.76 -64.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695819914.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.555 kcal (2) G-P(sol) polarization free energy of solvation -67.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds