Wall clock time and date at job start Mon Mar 30 2020 06:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47487 * 2 1 4 4 C 1.53004 * 109.46882 * 119.99882 * 2 1 3 5 5 C 1.50705 * 109.47057 * 294.99937 * 4 2 1 6 6 H 1.08001 * 120.00099 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99788 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00428 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99925 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47136 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47270 * 119.99532 * 9 7 5 12 12 H 1.48498 * 109.47394 * 239.99705 * 9 7 5 13 13 N 1.46496 * 109.47140 * 239.99514 * 2 1 3 14 14 C 1.36966 * 125.07226 * 299.97777 * 13 2 1 15 15 C 1.34209 * 109.88101 * 179.97438 * 14 13 2 16 16 C 1.46467 * 106.99560 * 0.02562 * 15 14 13 17 17 C 1.37693 * 125.07065 * 119.97857 * 13 2 1 18 18 C 1.39212 * 133.36482 * 0.02562 * 17 13 2 19 19 C 1.37773 * 120.06451 * 180.02562 * 18 17 13 20 20 C 1.38702 * 120.74030 * 359.72362 * 19 18 17 21 21 C 1.38368 * 120.29120 * 0.55924 * 20 19 18 22 22 N 1.39568 * 120.24521 * 179.72492 * 21 20 19 23 23 H 1.09004 * 109.46887 * 59.99708 * 1 2 3 24 24 H 1.08997 * 109.47750 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47154 * 300.00188 * 1 2 3 26 26 H 1.09003 * 109.47160 * 54.99837 * 4 2 1 27 27 H 1.08999 * 109.47027 * 174.99781 * 4 2 1 28 28 H 0.96999 * 120.00045 * 180.02562 * 8 7 5 29 29 H 1.07998 * 125.05673 * 359.97438 * 14 13 2 30 30 H 1.07998 * 126.50768 * 179.97438 * 15 14 13 31 31 H 1.08007 * 119.97050 * 359.97438 * 18 17 13 32 32 H 1.08004 * 119.63086 * 180.02562 * 19 18 17 33 33 H 1.07998 * 119.85857 * 180.27850 * 20 19 18 34 34 H 0.97001 * 120.00541 * 179.72818 * 22 21 20 35 35 H 0.97005 * 119.99732 * 359.44399 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0806 0.9747 2.3757 7 6 1.9931 -0.4016 3.7283 8 7 2.6762 -1.5187 3.8513 9 14 1.4983 0.5628 5.2497 10 1 0.7410 1.7739 4.8434 11 1 0.6449 -0.2869 6.1185 12 1 2.7161 0.9684 5.9965 13 7 2.0183 -0.6907 -1.1961 14 6 1.7526 -1.9960 -1.5147 15 6 2.3495 -2.3134 -2.6741 16 6 3.0547 -1.1151 -3.1346 17 6 2.8129 -0.1245 -2.1676 18 6 3.3628 1.1436 -2.3336 19 6 4.1367 1.4211 -3.4392 20 6 4.3832 0.4464 -4.3947 21 6 3.8431 -0.8199 -4.2555 22 7 4.0871 -1.7983 -5.2205 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6053 -1.7198 1.2952 27 1 3.1262 -0.7995 1.2057 28 1 2.9235 -1.8416 4.7319 29 1 1.1521 -2.6695 -0.9214 30 1 2.3169 -3.2709 -3.1725 31 1 3.1819 1.9110 -1.5954 32 1 4.5602 2.4072 -3.5607 33 1 4.9956 0.6781 -5.2536 34 1 3.7100 -2.6860 -5.1174 35 1 4.6304 -1.5892 -5.9965 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695820095.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:05 Heat of formation + Delta-G solvation = 44.476407 kcal Electronic energy + Delta-G solvation = -17039.968380 eV Core-core repulsion = 14423.528632 eV Total energy + Delta-G solvation = -2616.439748 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.80826 -37.32015 -34.59884 -33.96246 -32.31078 -29.45018 -28.51951 -27.33567 -27.01631 -23.82176 -21.92161 -21.52329 -21.05438 -18.65095 -17.01102 -16.69792 -16.09967 -15.54805 -14.93345 -14.70262 -14.41224 -14.11208 -13.32016 -13.19425 -12.62453 -12.56208 -12.21066 -12.02369 -11.64352 -11.48535 -11.15397 -11.02433 -10.92232 -10.71629 -10.52708 -10.17766 -10.10571 -9.64756 -9.29356 -8.48413 -8.28623 -7.68114 -6.59887 -6.12023 -4.16488 1.78128 2.14678 3.24565 3.28557 3.32497 3.35358 3.51175 4.11993 4.37019 4.41148 5.21111 5.24433 5.32103 5.42392 5.57021 5.73230 5.83781 5.89460 6.02637 6.10052 6.16775 6.29202 6.35313 6.47595 6.67514 6.72211 6.75842 7.01382 7.08636 7.29389 7.45705 7.51148 7.68668 7.79930 7.91466 7.98262 8.00761 8.23731 8.88674 9.48313 10.99116 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.036377 B = 0.005377 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.529334 B = 5206.547405 C = 5418.474896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.131 3.869 3 H 0.085 0.915 4 C 0.020 3.980 5 C -0.522 4.522 6 H 0.060 0.940 7 C 0.061 3.939 8 N -0.890 5.890 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.462 5.462 14 C 0.061 3.939 15 C -0.218 4.218 16 C -0.173 4.173 17 C 0.141 3.859 18 C -0.183 4.183 19 C -0.059 4.059 20 C -0.250 4.250 21 C 0.258 3.742 22 N -0.877 5.877 23 H 0.040 0.960 24 H 0.054 0.946 25 H 0.081 0.919 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.262 0.738 29 H 0.161 0.839 30 H 0.134 0.866 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.396 0.604 35 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 0.855 -14.600 14.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.031 3.969 3 H 0.103 0.897 4 C -0.018 4.018 5 C -0.561 4.561 6 H 0.078 0.922 7 C -0.142 4.142 8 N -0.529 5.529 9 Si 0.722 3.278 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.142 5.142 14 C -0.066 4.066 15 C -0.242 4.242 16 C -0.180 4.180 17 C 0.031 3.969 18 C -0.206 4.206 19 C -0.079 4.079 20 C -0.275 4.275 21 C 0.153 3.847 22 N -0.416 5.416 23 H 0.059 0.941 24 H 0.073 0.927 25 H 0.100 0.900 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.178 0.822 30 H 0.152 0.848 31 H 0.131 0.869 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.223 0.777 35 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -0.041 0.902 -14.109 14.138 hybrid contribution -0.094 0.087 0.757 0.768 sum -0.135 0.989 -13.352 13.390 Atomic orbital electron populations 1.22043 0.94654 1.02115 1.01620 1.21813 0.94477 0.96952 0.83671 0.89670 1.19446 0.97052 0.95917 0.89349 1.21083 1.35858 1.08651 0.90495 0.92162 1.24997 0.94906 0.95031 0.99220 1.69979 1.38211 1.21002 1.23685 0.86496 0.78366 0.80037 0.82896 1.19605 1.20916 1.20911 1.44695 1.40830 1.09713 1.18973 1.21662 1.02069 0.85841 0.97058 1.21269 1.06749 0.97489 0.98736 1.18633 1.07023 0.95489 0.96890 1.18071 0.95272 0.94179 0.89386 1.19798 1.05393 0.94454 1.00908 1.20348 0.96643 0.98050 0.92854 1.20079 1.10971 0.92939 1.03515 1.17116 0.91820 0.88658 0.87080 1.42335 1.60363 1.13452 1.25410 0.94068 0.92714 0.89991 0.95856 0.95898 0.92832 0.82204 0.84827 0.86880 0.86532 0.87071 0.77692 0.77937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.04 37.16 0.34 -2.32 16 2 C 0.13 2.69 2.95 -67.93 -0.20 2.49 16 3 H 0.09 1.75 7.32 -51.93 -0.38 1.37 16 4 C 0.02 0.50 4.43 -27.88 -0.12 0.37 16 5 C -0.52 -13.98 8.41 -34.44 -0.29 -14.27 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 9 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 13 N -0.46 -9.02 2.66 -107.33 -0.29 -9.30 16 14 C 0.06 1.09 10.26 -16.68 -0.17 0.92 16 15 C -0.22 -3.59 10.86 -37.69 -0.41 -4.00 16 16 C -0.17 -3.04 6.27 -104.99 -0.66 -3.69 16 17 C 0.14 2.69 6.81 -84.01 -0.57 2.12 16 18 C -0.18 -3.19 9.80 -39.39 -0.39 -3.57 16 19 C -0.06 -0.88 10.00 -39.58 -0.40 -1.28 16 20 C -0.25 -3.62 9.88 -39.36 -0.39 -4.01 16 21 C 0.26 3.92 6.78 -83.56 -0.57 3.35 16 22 N -0.88 -9.83 9.09 32.53 0.30 -9.54 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.96 7.90 -51.93 -0.41 0.55 16 25 H 0.08 1.52 6.95 -51.93 -0.36 1.16 16 26 H 0.02 0.61 8.04 -51.93 -0.42 0.19 16 27 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.16 2.60 8.06 -52.49 -0.42 2.17 16 30 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.11 1.88 7.54 -52.48 -0.40 1.49 16 32 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 33 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.40 3.96 8.66 -40.82 -0.35 3.60 16 35 H 0.39 3.39 8.84 -40.82 -0.36 3.03 16 LS Contribution 295.97 15.07 4.46 4.46 Total: -1.00 -30.48 295.97 -8.46 -38.94 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -4.72 Total: 7.18 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -3.92 Total: -22.31 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.75 Total: -44.22 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.48 -8.46 -38.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695820095.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.418 kcal (2) G-P(sol) polarization free energy of solvation -30.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds