Wall clock time and date at job start Mon Mar 30 2020 06:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47487 * 2 1 4 4 C 1.53004 * 109.46882 * 119.99882 * 2 1 3 5 5 C 1.50705 * 109.47057 * 294.99937 * 4 2 1 6 6 H 1.08001 * 120.00099 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99788 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00428 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99925 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47136 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47270 * 119.99532 * 9 7 5 12 12 H 1.48498 * 109.47394 * 239.99705 * 9 7 5 13 13 N 1.46496 * 109.47140 * 239.99514 * 2 1 3 14 14 C 1.36966 * 125.07226 * 299.97777 * 13 2 1 15 15 C 1.34209 * 109.88101 * 179.97438 * 14 13 2 16 16 C 1.46467 * 106.99560 * 0.02562 * 15 14 13 17 17 C 1.37693 * 125.07065 * 119.97857 * 13 2 1 18 18 C 1.39212 * 133.36482 * 0.02562 * 17 13 2 19 19 C 1.37773 * 120.06451 * 180.02562 * 18 17 13 20 20 C 1.38702 * 120.74030 * 359.72362 * 19 18 17 21 21 C 1.38368 * 120.29120 * 0.55924 * 20 19 18 22 22 N 1.39568 * 120.24521 * 179.72492 * 21 20 19 23 23 H 1.09004 * 109.46887 * 59.99708 * 1 2 3 24 24 H 1.08997 * 109.47750 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47154 * 300.00188 * 1 2 3 26 26 H 1.09003 * 109.47160 * 54.99837 * 4 2 1 27 27 H 1.08999 * 109.47027 * 174.99781 * 4 2 1 28 28 H 0.96999 * 120.00045 * 180.02562 * 8 7 5 29 29 H 1.07998 * 125.05673 * 359.97438 * 14 13 2 30 30 H 1.07998 * 126.50768 * 179.97438 * 15 14 13 31 31 H 1.08007 * 119.97050 * 359.97438 * 18 17 13 32 32 H 1.08004 * 119.63086 * 180.02562 * 19 18 17 33 33 H 1.07998 * 119.85857 * 180.27850 * 20 19 18 34 34 H 0.97001 * 120.00541 * 179.72818 * 22 21 20 35 35 H 0.97005 * 119.99732 * 359.44399 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0806 0.9747 2.3757 7 6 1.9931 -0.4016 3.7283 8 7 2.6762 -1.5187 3.8513 9 14 1.4983 0.5628 5.2497 10 1 0.7410 1.7739 4.8434 11 1 0.6449 -0.2869 6.1185 12 1 2.7161 0.9684 5.9965 13 7 2.0183 -0.6907 -1.1961 14 6 1.7526 -1.9960 -1.5147 15 6 2.3495 -2.3134 -2.6741 16 6 3.0547 -1.1151 -3.1346 17 6 2.8129 -0.1245 -2.1676 18 6 3.3628 1.1436 -2.3336 19 6 4.1367 1.4211 -3.4392 20 6 4.3832 0.4464 -4.3947 21 6 3.8431 -0.8199 -4.2555 22 7 4.0871 -1.7983 -5.2205 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6053 -1.7198 1.2952 27 1 3.1262 -0.7995 1.2057 28 1 2.9235 -1.8416 4.7319 29 1 1.1521 -2.6695 -0.9214 30 1 2.3169 -3.2709 -3.1725 31 1 3.1819 1.9110 -1.5954 32 1 4.5602 2.4072 -3.5607 33 1 4.9956 0.6781 -5.2536 34 1 3.7100 -2.6860 -5.1174 35 1 4.6304 -1.5892 -5.9965 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695820095.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:03 Heat of formation + Delta-G solvation = 26.909266 kcal Electronic energy + Delta-G solvation = -17040.730149 eV Core-core repulsion = 14423.528632 eV Total energy + Delta-G solvation = -2617.201517 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.13416 -38.59925 -36.29662 -35.08114 -34.24197 -30.86381 -29.86517 -28.91293 -28.43806 -25.69816 -23.18940 -23.02617 -22.43263 -20.02088 -18.76715 -18.02632 -17.60126 -16.77624 -16.56865 -16.18089 -15.72141 -15.57974 -14.92674 -14.59793 -14.28317 -13.92350 -13.71807 -13.44100 -13.24988 -12.92228 -12.81110 -12.72046 -12.37390 -12.29782 -11.97719 -11.91997 -11.46179 -11.34043 -11.30866 -10.62335 -9.55353 -9.00309 -8.24670 -7.79458 -6.36366 0.53252 0.89622 1.40079 1.40945 1.53698 1.95148 2.09818 2.41030 3.10232 3.13665 3.16342 3.86835 4.00204 4.05513 4.27477 4.36725 4.41433 4.47168 4.63247 4.81570 4.89486 4.93794 5.05592 5.12806 5.15730 5.22441 5.36316 5.46378 5.54489 5.71772 5.80937 5.93403 6.04509 6.08653 6.42789 6.60325 6.74174 6.79188 7.13990 7.33480 8.88114 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.036377 B = 0.005377 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.529334 B = 5206.547405 C = 5418.474896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.143 3.857 3 H 0.080 0.920 4 C 0.033 3.967 5 C -0.533 4.533 6 H 0.071 0.929 7 C 0.003 3.997 8 N -0.933 5.933 9 Si 0.967 3.033 10 H -0.257 1.257 11 H -0.278 1.278 12 H -0.282 1.282 13 N -0.477 5.477 14 C 0.029 3.971 15 C -0.204 4.204 16 C -0.197 4.197 17 C 0.113 3.887 18 C -0.218 4.218 19 C -0.048 4.048 20 C -0.255 4.255 21 C 0.260 3.740 22 N -0.860 5.860 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.077 0.923 26 H 0.002 0.998 27 H -0.020 1.020 28 H 0.264 0.736 29 H 0.166 0.834 30 H 0.165 0.835 31 H 0.108 0.892 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.403 0.597 35 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.015 1.614 -16.217 16.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.041 3.959 3 H 0.098 0.902 4 C -0.004 4.004 5 C -0.572 4.572 6 H 0.089 0.911 7 C -0.195 4.195 8 N -0.573 5.573 9 Si 0.791 3.209 10 H -0.181 1.181 11 H -0.204 1.204 12 H -0.208 1.208 13 N -0.158 5.158 14 C -0.096 4.096 15 C -0.228 4.228 16 C -0.205 4.205 17 C 0.004 3.996 18 C -0.241 4.241 19 C -0.068 4.068 20 C -0.279 4.279 21 C 0.153 3.847 22 N -0.399 5.399 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.096 0.904 26 H 0.020 0.980 27 H -0.002 1.002 28 H 0.073 0.927 29 H 0.183 0.817 30 H 0.182 0.818 31 H 0.126 0.874 32 H 0.164 0.836 33 H 0.161 0.839 34 H 0.232 0.768 35 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -0.068 1.639 -15.782 15.867 hybrid contribution 0.024 -0.181 1.102 1.117 sum -0.044 1.458 -14.681 14.753 Atomic orbital electron populations 1.21927 0.92672 1.02473 1.02278 1.21445 0.95899 0.95948 0.82572 0.90183 1.19214 0.94148 0.95367 0.91719 1.21495 1.35464 1.08972 0.91231 0.91074 1.25955 0.94797 0.95963 1.02779 1.70121 1.39697 1.22916 1.24548 0.85368 0.78045 0.78927 0.78545 1.18058 1.20363 1.20798 1.44587 1.41959 1.10370 1.18853 1.21951 1.03702 0.85703 0.98276 1.21650 1.04962 0.98327 0.97885 1.18941 1.08269 0.95487 0.97809 1.18525 0.95774 0.95399 0.89908 1.19990 1.07495 0.94193 1.02421 1.20747 0.94858 0.99558 0.91613 1.20484 1.10827 0.92391 1.04245 1.17275 0.90803 0.89747 0.86919 1.42290 1.59741 1.13034 1.24865 0.92083 0.92519 0.90449 0.97986 1.00170 0.92730 0.81703 0.81784 0.87410 0.83609 0.83866 0.76802 0.76092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 9.04 71.98 0.65 -4.29 16 2 C 0.14 6.06 2.95 44.99 0.13 6.20 16 3 H 0.08 3.42 7.32 -2.39 -0.02 3.40 16 4 C 0.03 1.75 4.43 29.85 0.13 1.88 16 5 C -0.53 -29.18 8.41 25.60 0.22 -28.97 16 6 H 0.07 3.66 7.06 -2.91 -0.02 3.63 16 7 C 0.00 0.18 5.46 84.65 0.46 0.65 16 8 N -0.93 -56.34 13.29 21.45 0.28 -56.06 16 9 Si 0.97 43.26 29.54 68.60 2.03 45.29 16 10 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 11 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 13 N -0.48 -19.15 2.66 -493.50 -1.31 -20.46 16 14 C 0.03 1.07 10.26 82.97 0.85 1.92 16 15 C -0.20 -6.57 10.86 23.50 0.26 -6.32 16 16 C -0.20 -6.77 6.27 -20.10 -0.13 -6.90 16 17 C 0.11 4.36 6.81 39.02 0.27 4.63 16 18 C -0.22 -7.62 9.80 22.39 0.22 -7.40 16 19 C -0.05 -1.35 10.00 22.27 0.22 -1.13 16 20 C -0.25 -6.63 9.88 22.41 0.22 -6.41 16 21 C 0.26 7.28 6.78 38.41 0.26 7.54 16 22 N -0.86 -16.49 9.09 -50.98 -0.46 -16.96 16 23 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.06 2.01 7.90 -2.39 -0.02 1.99 16 25 H 0.08 2.85 6.95 -2.39 -0.02 2.84 16 26 H 0.00 0.10 8.04 -2.39 -0.02 0.08 16 27 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 28 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 29 H 0.17 5.58 8.06 -2.91 -0.02 5.55 16 30 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16 31 H 0.11 3.72 7.54 -2.91 -0.02 3.69 16 32 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 33 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 34 H 0.40 6.79 8.66 -92.71 -0.80 5.99 16 35 H 0.41 5.48 8.84 -92.70 -0.82 4.66 16 Total: -1.00 -67.24 295.97 3.78 -63.46 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -0.52 Total: 23.33 kcal Atomic # 6 Polarization: -42.36 SS G_CDS: 3.76 Total: -38.60 kcal Atomic # 7 Polarization: -91.99 SS G_CDS: -1.49 Total: -93.48 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -67.24 3.78 -63.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695820095.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.364 kcal (2) G-P(sol) polarization free energy of solvation -67.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds