Wall clock time and date at job start Mon Mar 30 2020 05:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37842 * 120.04035 * 2 1 4 4 C 1.38527 * 120.34406 * 180.02562 * 3 2 1 5 5 C 1.38061 * 120.41910 * 359.71769 * 4 3 2 6 6 C 1.38830 * 120.07375 * 0.55714 * 5 4 3 7 7 N 1.39036 * 120.17570 * 179.72094 * 6 5 4 8 8 C 1.46504 * 120.00046 * 359.72775 * 7 6 5 9 9 H 1.09008 * 109.46847 * 34.99974 * 8 7 6 10 10 C 1.52994 * 109.47145 * 275.00314 * 8 7 6 11 11 C 1.52997 * 109.47349 * 154.99816 * 8 7 6 12 12 C 1.50701 * 109.47212 * 295.00023 * 11 8 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 8 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 8 15 15 N 1.31512 * 119.99594 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99875 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47061 * 90.00257 * 16 14 12 18 18 H 1.48497 * 109.46906 * 209.99430 * 16 14 12 19 19 H 1.48498 * 109.47403 * 329.99876 * 16 14 12 20 20 C 1.39686 * 120.03966 * 180.02562 * 2 1 3 21 21 C 1.43199 * 120.20939 * 359.95765 * 20 2 1 22 22 N 3.48640 * 80.50490 * 179.97438 * 2 1 3 23 23 H 1.08998 * 109.46747 * 269.98253 * 1 2 3 24 24 H 1.08999 * 109.46535 * 29.97747 * 1 2 3 25 25 H 1.08994 * 109.46756 * 149.97981 * 1 2 3 26 26 H 1.07999 * 119.82679 * 0.03901 * 3 2 1 27 27 H 1.08004 * 119.78818 * 180.02562 * 4 3 2 28 28 H 1.08007 * 119.96186 * 180.28275 * 5 4 3 29 29 H 0.97006 * 120.00462 * 179.72657 * 7 6 5 30 30 H 1.09008 * 109.46970 * 299.99584 * 10 8 7 31 31 H 1.08996 * 109.47654 * 59.99346 * 10 8 7 32 32 H 1.09000 * 109.47476 * 179.97438 * 10 8 7 33 33 H 1.09002 * 109.47153 * 175.00025 * 11 8 7 34 34 H 1.09001 * 109.46832 * 55.00216 * 11 8 7 35 35 H 0.97002 * 119.99739 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1933 0.0000 4 6 3.5823 1.2006 -0.0005 5 6 4.2877 0.0138 0.0048 6 6 3.6103 -1.1981 -0.0009 7 7 4.3186 -2.3945 -0.0015 8 6 5.7835 -2.3786 -0.0019 9 1 6.1378 -1.5330 0.5876 10 6 6.2916 -2.2470 -1.4390 11 6 6.3079 -3.6804 0.6072 12 6 5.9105 -3.7515 2.0592 13 1 5.3405 -2.9487 2.5029 14 6 6.2737 -4.8420 2.8207 15 7 5.9265 -4.9042 4.0876 16 14 7.2590 -6.2309 2.0529 17 1 8.7096 -5.9529 2.2073 18 1 6.9250 -7.5087 2.7317 19 1 6.9258 -6.3352 0.6096 20 6 2.2063 -1.2092 -0.0005 21 6 1.4957 -2.4525 -0.0002 22 7 0.9319 -3.4386 0.0015 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3632 0.8902 -0.5135 25 1 -0.3632 -0.8898 -0.5141 26 1 1.6549 2.1273 0.0006 27 1 4.1139 2.1408 -0.0001 28 1 5.3676 0.0281 0.0090 29 1 3.8427 -3.2399 -0.0015 30 1 5.9372 -3.0926 -2.0286 31 1 5.9180 -1.3196 -1.8731 32 1 7.3815 -2.2347 -1.4394 33 1 7.3946 -3.7076 0.5262 34 1 5.8823 -4.5293 0.0720 35 1 6.1823 -5.6712 4.6235 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709978880.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:38 Heat of formation + Delta-G solvation = 38.134809 kcal Electronic energy + Delta-G solvation = -16931.920478 eV Core-core repulsion = 14315.205737 eV Total energy + Delta-G solvation = -2616.714741 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.71302 -36.74311 -35.99107 -33.22870 -32.21674 -31.69804 -28.55264 -28.01700 -26.85740 -23.37406 -22.99476 -21.31151 -19.77641 -18.26111 -16.82576 -16.71679 -15.94163 -14.61242 -14.42663 -14.40737 -14.20234 -13.52340 -13.10973 -12.88093 -12.84327 -12.68453 -12.48011 -12.29465 -12.22446 -11.94374 -11.79131 -11.75507 -11.26482 -11.05529 -10.80241 -10.57131 -10.03453 -9.88020 -9.58498 -9.28129 -8.62972 -8.57217 -7.09256 -6.11533 -4.11273 1.14361 1.80026 3.03826 3.23587 3.31524 3.32745 3.33571 3.79350 4.18069 4.33989 4.36937 4.88749 5.02602 5.21762 5.36948 5.46795 5.51340 5.60248 5.61360 5.70764 5.77654 5.82467 5.94018 6.12318 6.18850 6.32287 6.42006 6.51691 6.58521 6.72981 6.89544 6.98167 7.10428 7.62838 7.70678 7.90889 8.08195 8.43077 8.94178 9.49314 11.01476 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025118 B = 0.006414 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.465834 B = 4364.261803 C = 4786.110179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.011 3.989 3 C -0.201 4.201 4 C -0.037 4.037 5 C -0.211 4.211 6 C 0.287 3.713 7 N -0.702 5.702 8 C 0.151 3.849 9 H 0.081 0.919 10 C -0.168 4.168 11 C -0.022 4.022 12 C -0.522 4.522 13 H 0.075 0.925 14 C 0.069 3.931 15 N -0.897 5.897 16 Si 0.877 3.123 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.267 1.267 20 C -0.134 4.134 21 C 0.266 3.734 22 N -0.441 5.441 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.132 0.868 29 H 0.402 0.598 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.029 0.971 34 H 0.020 0.980 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.100 12.438 -10.504 16.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.008 3.992 3 C -0.221 4.221 4 C -0.057 4.057 5 C -0.233 4.233 6 C 0.173 3.827 7 N -0.323 5.323 8 C 0.047 3.953 9 H 0.098 0.902 10 C -0.227 4.227 11 C -0.060 4.060 12 C -0.560 4.560 13 H 0.093 0.907 14 C -0.133 4.133 15 N -0.536 5.536 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.191 1.191 20 C -0.144 4.144 21 C -0.047 4.047 22 N -0.118 5.118 23 H 0.095 0.905 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.140 0.860 27 H 0.141 0.859 28 H 0.149 0.851 29 H 0.238 0.762 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.038 0.962 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.695 10.738 -10.332 15.623 hybrid contribution 0.656 -0.857 -0.099 1.084 sum -4.039 9.881 -10.431 14.925 Atomic orbital electron populations 1.20884 0.91285 1.02800 1.02819 1.19547 0.95236 0.91119 0.93275 1.20522 0.94057 0.96604 1.10924 1.21011 0.93916 0.97359 0.93373 1.20643 1.00260 0.90393 1.12035 1.17811 0.88804 0.87748 0.88336 1.45057 1.06638 1.05001 1.75605 1.21127 0.78184 1.01572 0.94440 0.90152 1.22331 1.01141 1.01448 0.97748 1.19893 0.96619 0.92042 0.97452 1.21040 1.35743 1.06645 0.92608 0.90666 1.25024 0.95557 0.98031 0.94687 1.69908 1.46315 1.30570 1.06759 0.86831 0.80742 0.82097 0.79908 1.20169 1.21336 1.19146 1.15363 0.90021 0.87035 1.21950 1.25543 0.93475 0.92755 0.92934 1.81213 1.08850 1.10496 1.11216 0.90541 0.90863 0.91823 0.86039 0.85897 0.85066 0.76231 0.92838 0.92914 0.91847 0.95245 0.96206 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 9.61 36.01 0.35 -0.94 16 2 C 0.01 0.14 5.91 -104.23 -0.62 -0.47 16 3 C -0.20 -2.25 9.68 -39.62 -0.38 -2.63 16 4 C -0.04 -0.42 10.03 -39.54 -0.40 -0.82 16 5 C -0.21 -2.91 8.84 -39.43 -0.35 -3.25 16 6 C 0.29 4.63 6.64 -83.56 -0.55 4.07 16 7 N -0.70 -12.63 4.87 -51.95 -0.25 -12.88 16 8 C 0.15 2.69 2.21 -67.93 -0.15 2.54 16 9 H 0.08 1.43 6.46 -51.92 -0.34 1.09 16 10 C -0.17 -2.42 9.43 37.15 0.35 -2.07 16 11 C -0.02 -0.50 3.58 -27.88 -0.10 -0.60 16 12 C -0.52 -14.20 9.39 -34.44 -0.32 -14.52 16 13 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 14 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 15 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 16 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 20 C -0.13 -2.10 5.76 -106.61 -0.61 -2.71 16 21 C 0.27 4.67 12.57 -22.48 -0.28 4.38 16 22 N -0.44 -8.50 18.54 41.84 0.78 -7.72 16 23 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 25 H 0.06 0.73 7.09 -51.93 -0.37 0.36 16 26 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 27 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 28 H 0.13 1.71 6.12 -52.48 -0.32 1.39 16 29 H 0.40 7.83 7.46 -40.82 -0.30 7.53 16 30 H 0.05 0.78 8.14 -51.92 -0.42 0.35 16 31 H 0.05 0.68 7.73 -51.93 -0.40 0.27 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 34 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 299.26 15.07 4.51 4.51 Total: -1.00 -30.65 299.26 -6.65 -37.30 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -4.62 Total: 3.98 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -3.17 Total: -15.14 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: 1.30 Total: -47.23 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.65 -6.65 -37.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709978880.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.432 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds