Wall clock time and date at job start Mon Mar 30 2020 05:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37842 * 120.04035 * 2 1 4 4 C 1.38527 * 120.34406 * 180.02562 * 3 2 1 5 5 C 1.38061 * 120.41910 * 359.71769 * 4 3 2 6 6 C 1.38830 * 120.07375 * 0.55714 * 5 4 3 7 7 N 1.39036 * 120.17570 * 179.72094 * 6 5 4 8 8 C 1.46504 * 120.00046 * 359.72775 * 7 6 5 9 9 H 1.09008 * 109.46847 * 34.99974 * 8 7 6 10 10 C 1.52994 * 109.47145 * 275.00314 * 8 7 6 11 11 C 1.52997 * 109.47349 * 154.99816 * 8 7 6 12 12 C 1.50701 * 109.47212 * 295.00023 * 11 8 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 8 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 8 15 15 N 1.31512 * 119.99594 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99875 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47061 * 90.00257 * 16 14 12 18 18 H 1.48497 * 109.46906 * 209.99430 * 16 14 12 19 19 H 1.48498 * 109.47403 * 329.99876 * 16 14 12 20 20 C 1.39686 * 120.03966 * 180.02562 * 2 1 3 21 21 C 1.43199 * 120.20939 * 359.95765 * 20 2 1 22 22 N 3.48640 * 80.50490 * 179.97438 * 2 1 3 23 23 H 1.08998 * 109.46747 * 269.98253 * 1 2 3 24 24 H 1.08999 * 109.46535 * 29.97747 * 1 2 3 25 25 H 1.08994 * 109.46756 * 149.97981 * 1 2 3 26 26 H 1.07999 * 119.82679 * 0.03901 * 3 2 1 27 27 H 1.08004 * 119.78818 * 180.02562 * 4 3 2 28 28 H 1.08007 * 119.96186 * 180.28275 * 5 4 3 29 29 H 0.97006 * 120.00462 * 179.72657 * 7 6 5 30 30 H 1.09008 * 109.46970 * 299.99584 * 10 8 7 31 31 H 1.08996 * 109.47654 * 59.99346 * 10 8 7 32 32 H 1.09000 * 109.47476 * 179.97438 * 10 8 7 33 33 H 1.09002 * 109.47153 * 175.00025 * 11 8 7 34 34 H 1.09001 * 109.46832 * 55.00216 * 11 8 7 35 35 H 0.97002 * 119.99739 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1933 0.0000 4 6 3.5823 1.2006 -0.0005 5 6 4.2877 0.0138 0.0048 6 6 3.6103 -1.1981 -0.0009 7 7 4.3186 -2.3945 -0.0015 8 6 5.7835 -2.3786 -0.0019 9 1 6.1378 -1.5330 0.5876 10 6 6.2916 -2.2470 -1.4390 11 6 6.3079 -3.6804 0.6072 12 6 5.9105 -3.7515 2.0592 13 1 5.3405 -2.9487 2.5029 14 6 6.2737 -4.8420 2.8207 15 7 5.9265 -4.9042 4.0876 16 14 7.2590 -6.2309 2.0529 17 1 8.7096 -5.9529 2.2073 18 1 6.9250 -7.5087 2.7317 19 1 6.9258 -6.3352 0.6096 20 6 2.2063 -1.2092 -0.0005 21 6 1.4957 -2.4525 -0.0002 22 7 0.9319 -3.4386 0.0015 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3632 0.8902 -0.5135 25 1 -0.3632 -0.8898 -0.5141 26 1 1.6549 2.1273 0.0006 27 1 4.1139 2.1408 -0.0001 28 1 5.3676 0.0281 0.0090 29 1 3.8427 -3.2399 -0.0015 30 1 5.9372 -3.0926 -2.0286 31 1 5.9180 -1.3196 -1.8731 32 1 7.3815 -2.2347 -1.4394 33 1 7.3946 -3.7076 0.5262 34 1 5.8823 -4.5293 0.0720 35 1 6.1823 -5.6712 4.6235 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709978880.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:37 Heat of formation + Delta-G solvation = 19.690103 kcal Electronic energy + Delta-G solvation = -16932.720300 eV Core-core repulsion = 14315.205737 eV Total energy + Delta-G solvation = -2617.514563 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.83431 -38.07548 -37.33864 -35.01000 -33.56504 -32.98697 -30.08418 -29.38899 -27.83223 -24.92639 -24.24524 -22.69887 -21.04207 -19.45596 -18.93733 -17.90361 -17.19183 -16.34720 -15.69340 -15.56171 -15.38029 -14.95939 -14.50891 -14.34817 -14.06425 -14.00823 -13.82713 -13.64332 -13.56226 -13.38699 -13.09092 -12.83808 -12.53687 -12.44202 -12.22655 -11.87807 -11.73584 -11.53767 -11.36497 -10.81365 -10.78134 -9.63178 -8.30854 -8.28866 -6.34067 0.05166 0.75720 1.31811 1.34854 1.44557 1.67585 2.07611 2.32529 2.50547 3.04633 3.06276 3.13437 3.86254 4.08884 4.18051 4.38543 4.41548 4.53718 4.59493 4.62324 4.79766 4.82042 4.92913 4.99284 5.03650 5.10049 5.21555 5.29608 5.37801 5.42110 5.61924 5.63185 5.73664 6.03412 6.24476 6.40274 6.59873 6.68540 6.75345 7.29902 8.86094 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025118 B = 0.006414 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.465834 B = 4364.261803 C = 4786.110179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.008 3.992 3 C -0.188 4.188 4 C -0.024 4.024 5 C -0.222 4.222 6 C 0.265 3.735 7 N -0.720 5.720 8 C 0.157 3.843 9 H 0.078 0.922 10 C -0.157 4.157 11 C -0.022 4.022 12 C -0.517 4.517 13 H 0.033 0.967 14 C 0.002 3.998 15 N -0.952 5.952 16 Si 0.947 3.053 17 H -0.260 1.260 18 H -0.293 1.293 19 H -0.249 1.249 20 C -0.160 4.160 21 C 0.281 3.719 22 N -0.488 5.488 23 H 0.080 0.920 24 H 0.105 0.895 25 H 0.047 0.953 26 H 0.160 0.840 27 H 0.162 0.838 28 H 0.137 0.863 29 H 0.388 0.612 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.043 0.957 34 H 0.017 0.983 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.342 14.724 -12.432 19.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.005 3.995 3 C -0.207 4.207 4 C -0.043 4.043 5 C -0.244 4.244 6 C 0.153 3.847 7 N -0.342 5.342 8 C 0.052 3.948 9 H 0.096 0.904 10 C -0.215 4.215 11 C -0.060 4.060 12 C -0.556 4.556 13 H 0.051 0.949 14 C -0.195 4.195 15 N -0.593 5.593 16 Si 0.771 3.229 17 H -0.185 1.185 18 H -0.219 1.219 19 H -0.172 1.172 20 C -0.170 4.170 21 C -0.031 4.031 22 N -0.166 5.166 23 H 0.098 0.902 24 H 0.124 0.876 25 H 0.066 0.934 26 H 0.177 0.823 27 H 0.179 0.821 28 H 0.155 0.845 29 H 0.221 0.779 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.035 0.965 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.941 13.073 -12.288 18.369 hybrid contribution 0.335 -1.365 0.549 1.509 sum -3.606 11.708 -11.739 16.967 Atomic orbital electron populations 1.20945 0.89785 1.03655 1.03305 1.19906 0.96469 0.90668 0.92493 1.20999 0.94230 0.97232 1.08285 1.21483 0.94236 0.97885 0.90732 1.20871 1.00793 0.90368 1.12384 1.18107 0.89059 0.87890 0.89625 1.45040 1.06569 1.05161 1.77387 1.21000 0.78417 0.98911 0.96435 0.90446 1.22218 1.02017 1.02292 0.94963 1.19870 0.97453 0.94501 0.94135 1.21336 1.34007 1.04995 0.95217 0.94912 1.26006 0.97161 1.01215 0.95076 1.70081 1.48753 1.31740 1.08688 0.85711 0.79602 0.77962 0.79653 1.18509 1.21895 1.17217 1.15685 0.90132 0.87197 1.23938 1.26001 0.92598 0.92836 0.91714 1.81191 1.10444 1.11693 1.13245 0.90155 0.87619 0.93368 0.82271 0.82086 0.84501 0.77859 0.93127 0.91074 0.90220 0.93837 0.96494 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 9.61 71.24 0.68 -1.62 16 2 C 0.01 0.18 5.91 -19.61 -0.12 0.06 16 3 C -0.19 -3.43 9.68 22.24 0.22 -3.22 16 4 C -0.02 -0.45 10.03 22.30 0.22 -0.23 16 5 C -0.22 -5.68 8.84 22.37 0.20 -5.48 16 6 C 0.26 8.48 6.64 38.67 0.26 8.74 16 7 N -0.72 -26.39 4.87 -318.28 -1.55 -27.94 16 8 C 0.16 5.51 2.21 44.99 0.10 5.61 16 9 H 0.08 2.72 6.46 -2.38 -0.02 2.71 16 10 C -0.16 -4.16 9.43 71.98 0.68 -3.48 16 11 C -0.02 -0.96 3.58 29.85 0.11 -0.85 16 12 C -0.52 -28.93 9.39 25.60 0.24 -28.69 16 13 H 0.03 2.05 7.99 -2.91 -0.02 2.03 16 14 C 0.00 0.11 5.47 84.66 0.46 0.58 16 15 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 16 Si 0.95 44.10 27.47 68.60 1.88 45.99 16 17 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 18 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 19 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 20 C -0.16 -5.00 5.76 -21.15 -0.12 -5.12 16 21 C 0.28 10.22 12.57 88.33 1.11 11.33 16 22 N -0.49 -19.75 18.54 19.00 0.35 -19.40 16 23 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.11 1.32 8.08 -2.39 -0.02 1.30 16 25 H 0.05 1.08 7.09 -2.39 -0.02 1.06 16 26 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 27 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 28 H 0.14 3.29 6.12 -2.91 -0.02 3.27 16 29 H 0.39 15.85 7.46 -92.70 -0.69 15.16 16 30 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.07 1.63 7.73 -2.39 -0.02 1.61 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.04 1.79 7.57 -2.39 -0.02 1.77 16 34 H 0.02 0.75 7.20 -2.39 -0.02 0.73 16 35 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -70.18 299.26 5.38 -64.80 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.35 Total: 18.93 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: 4.04 Total: -22.36 kcal Atomic # 7 Polarization: -106.47 SS G_CDS: -0.90 Total: -107.36 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.99 kcal Total: -70.18 5.38 -64.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709978880.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.495 kcal (2) G-P(sol) polarization free energy of solvation -70.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds