Wall clock time and date at job start Mon Mar 30 2020 06:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 109.46711 * 2 1 4 4 C 1.50695 * 109.46791 * 119.99664 * 2 1 3 5 5 H 1.08001 * 119.99549 * 120.00267 * 4 2 1 6 6 C 1.37875 * 120.00557 * 300.00364 * 4 2 1 7 7 N 1.31514 * 119.99873 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00249 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47473 * 59.99346 * 8 6 4 10 10 H 1.48500 * 109.47471 * 179.97438 * 8 6 4 11 11 H 1.48510 * 109.46559 * 299.99594 * 8 6 4 12 12 N 1.46500 * 109.47013 * 240.00217 * 2 1 3 13 13 N 1.40102 * 120.00144 * 89.99920 * 12 2 1 14 14 C 1.29743 * 119.99694 * 173.80280 * 13 12 2 15 15 C 1.50954 * 125.97603 * 167.23296 * 14 13 12 16 16 C 1.53477 * 105.32495 * 179.97438 * 15 14 13 17 17 C 1.50985 * 106.36720 * 359.97438 * 16 15 14 18 18 C 1.38269 * 130.45646 * 179.97438 * 17 16 15 19 19 C 1.38225 * 120.32688 * 180.02562 * 18 17 16 20 20 C 1.38383 * 120.17147 * 359.88494 * 19 18 17 21 21 C 1.37749 * 120.13651 * 0.14542 * 20 19 18 22 22 C 1.39287 * 109.63770 * 0.02562 * 17 16 15 23 23 H 1.09001 * 109.47434 * 300.00316 * 1 2 3 24 24 H 1.09005 * 109.46928 * 59.99737 * 1 2 3 25 25 H 1.09000 * 109.46832 * 179.97438 * 1 2 3 26 26 H 0.96998 * 120.00070 * 180.02562 * 7 6 4 27 27 H 0.97001 * 119.99698 * 269.99311 * 12 2 1 28 28 H 1.08998 * 110.27879 * 298.96098 * 15 14 13 29 29 H 1.09004 * 110.27560 * 61.03611 * 15 14 13 30 30 H 1.08994 * 110.07707 * 119.22552 * 16 15 14 31 31 H 1.09008 * 110.07708 * 240.77197 * 16 15 14 32 32 H 1.08010 * 119.83328 * 0.04139 * 18 17 16 33 33 H 1.08002 * 119.91804 * 179.97438 * 19 18 17 34 34 H 1.07992 * 119.93825 * 180.02562 * 20 19 18 35 35 H 1.07992 * 119.95720 * 180.18690 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.8073 -1.1190 4.0078 10 1 1.8278 -0.4192 5.2205 11 1 1.8278 -2.5198 4.0081 12 7 2.0184 -0.6906 -1.1962 13 7 2.2519 0.0300 -2.3748 14 6 2.7968 -0.5559 -3.3961 15 6 2.8650 -0.0075 -4.8009 16 6 3.6036 -1.0763 -5.6181 17 6 3.9320 -2.1944 -4.6581 18 6 4.5872 -3.3937 -4.8681 19 6 4.7765 -4.2780 -3.8228 20 6 4.3128 -3.9674 -2.5565 21 6 3.6578 -2.7765 -2.3327 22 6 3.4592 -1.8745 -3.3876 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7094 1.1618 3.4844 27 1 2.1801 -1.6467 -1.1721 28 1 1.8607 0.1438 -5.1965 29 1 3.4220 0.9293 -4.8140 30 1 2.9617 -1.4457 -6.4178 31 1 4.5207 -0.6605 -6.0357 32 1 4.9532 -3.6406 -5.8539 33 1 5.2888 -5.2132 -3.9943 34 1 4.4631 -4.6609 -1.7424 35 1 3.2998 -2.5357 -1.3426 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771886185.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:20 Heat of formation + Delta-G solvation = 64.856481 kcal Electronic energy + Delta-G solvation = -16919.533518 eV Core-core repulsion = 14303.977516 eV Total energy + Delta-G solvation = -2615.556002 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.84138 -36.43083 -35.25864 -33.48512 -31.22331 -30.21059 -28.91329 -27.33656 -25.26736 -24.18258 -22.57223 -21.08704 -20.14285 -19.43700 -17.06654 -16.05296 -15.38786 -15.22326 -15.13001 -14.88344 -13.89879 -13.72951 -13.00795 -12.58431 -12.47158 -12.38535 -12.12388 -11.97982 -11.58250 -11.40920 -11.16447 -11.02857 -10.87157 -10.77869 -10.31245 -10.22622 -10.19179 -9.41946 -9.04892 -8.74511 -8.58603 -8.46874 -6.70589 -6.14460 -4.23758 1.23116 1.54226 2.96754 3.24654 3.29320 3.30788 3.74967 4.08039 4.35036 4.57044 4.94917 5.10733 5.16734 5.17420 5.30352 5.35593 5.53890 5.63614 5.68169 5.91997 6.13190 6.16945 6.17861 6.26316 6.54827 6.66487 6.70804 6.79916 7.01587 7.10396 7.15214 7.15680 7.56412 7.77067 7.85766 8.13565 8.29081 8.82977 9.31172 9.43186 10.90830 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.027557 B = 0.006034 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.845772 B = 4638.966783 C = 5476.245957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.293 3.707 3 H 0.041 0.959 4 C -0.533 4.533 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.621 5.621 13 N -0.182 5.182 14 C 0.011 3.989 15 C -0.045 4.045 16 C -0.074 4.074 17 C -0.093 4.093 18 C -0.109 4.109 19 C -0.127 4.127 20 C -0.116 4.116 21 C -0.116 4.116 22 C -0.064 4.064 23 H 0.090 0.910 24 H 0.014 0.986 25 H 0.025 0.975 26 H 0.265 0.735 27 H 0.373 0.627 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.240 -6.475 -13.606 15.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.191 3.809 3 H 0.059 0.941 4 C -0.573 4.573 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.361 5.361 13 N 0.005 4.995 14 C -0.176 4.176 15 C -0.084 4.084 16 C -0.112 4.112 17 C -0.095 4.095 18 C -0.127 4.127 19 C -0.146 4.146 20 C -0.134 4.134 21 C -0.137 4.137 22 C -0.067 4.067 23 H 0.108 0.892 24 H 0.033 0.967 25 H 0.045 0.955 26 H 0.075 0.925 27 H 0.215 0.785 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.656 -5.287 -12.926 14.721 hybrid contribution 0.759 -1.681 0.933 2.067 sum 5.415 -6.968 -11.994 14.890 Atomic orbital electron populations 1.22175 0.98746 0.99229 1.00595 1.18588 0.90405 0.93566 0.78359 0.94070 1.21198 1.32426 1.13318 0.90328 0.92415 1.24846 0.94761 0.94971 0.98907 1.69878 1.35883 1.22419 1.24047 0.86497 0.79208 0.79650 0.81719 1.20165 1.21004 1.20112 1.49439 1.70604 1.07880 1.08166 1.73991 1.07543 1.24596 0.93357 1.22970 1.05772 0.93367 0.95524 1.20396 1.01078 0.98053 0.88916 1.20753 1.00446 0.93094 0.96880 1.20516 0.98610 0.95316 0.95083 1.20479 0.99911 0.93357 0.98947 1.21012 1.01138 0.99431 0.93008 1.20974 0.98531 0.96747 0.97172 1.21409 0.99871 0.93898 0.98479 1.20167 0.98100 0.94558 0.93910 0.89152 0.96676 0.95536 0.92470 0.78526 0.90093 0.90107 0.90200 0.90219 0.86434 0.86192 0.85966 0.85490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.29 37.16 0.35 -3.37 16 2 C 0.29 7.65 3.23 -69.08 -0.22 7.42 16 3 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.53 -14.53 8.74 -34.44 -0.30 -14.83 16 5 H 0.06 1.53 7.79 -52.49 -0.41 1.13 16 6 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 7 N -0.88 -24.77 11.32 55.43 0.63 -24.15 16 8 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.62 -14.43 5.87 -5.88 -0.03 -14.46 16 13 N -0.18 -3.95 11.58 35.19 0.41 -3.54 16 14 C 0.01 0.21 7.44 -79.55 -0.59 -0.39 16 15 C -0.05 -0.61 6.86 -27.51 -0.19 -0.80 16 16 C -0.07 -0.84 6.79 -27.50 -0.19 -1.03 16 17 C -0.09 -1.31 6.20 -104.08 -0.65 -1.95 16 18 C -0.11 -1.35 10.03 -39.57 -0.40 -1.75 16 19 C -0.13 -1.58 10.04 -39.53 -0.40 -1.97 16 20 C -0.12 -1.66 10.02 -39.71 -0.40 -2.06 16 21 C -0.12 -1.98 9.20 -39.02 -0.36 -2.34 16 22 C -0.06 -1.11 6.00 -104.96 -0.63 -1.74 16 23 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 24 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.37 8.21 4.62 -182.60 -0.84 7.37 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 32 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 35 H 0.13 2.38 5.29 -52.49 -0.28 2.10 16 LS Contribution 292.04 15.07 4.40 4.40 Total: -1.00 -29.38 292.04 -8.89 -38.28 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -5.21 Total: 6.64 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -4.07 Total: -23.04 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 1.00 Total: -42.15 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.38 -8.89 -38.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886185.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.135 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds