Wall clock time and date at job start Mon Mar 30 2020 06:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 109.46711 * 2 1 4 4 C 1.50695 * 109.46791 * 119.99664 * 2 1 3 5 5 H 1.08001 * 119.99549 * 120.00267 * 4 2 1 6 6 C 1.37875 * 120.00557 * 300.00364 * 4 2 1 7 7 N 1.31514 * 119.99873 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00249 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47473 * 59.99346 * 8 6 4 10 10 H 1.48500 * 109.47471 * 179.97438 * 8 6 4 11 11 H 1.48510 * 109.46559 * 299.99594 * 8 6 4 12 12 N 1.46500 * 109.47013 * 240.00217 * 2 1 3 13 13 N 1.40102 * 120.00144 * 89.99920 * 12 2 1 14 14 C 1.29743 * 119.99694 * 173.80280 * 13 12 2 15 15 C 1.50954 * 125.97603 * 167.23296 * 14 13 12 16 16 C 1.53477 * 105.32495 * 179.97438 * 15 14 13 17 17 C 1.50985 * 106.36720 * 359.97438 * 16 15 14 18 18 C 1.38269 * 130.45646 * 179.97438 * 17 16 15 19 19 C 1.38225 * 120.32688 * 180.02562 * 18 17 16 20 20 C 1.38383 * 120.17147 * 359.88494 * 19 18 17 21 21 C 1.37749 * 120.13651 * 0.14542 * 20 19 18 22 22 C 1.39287 * 109.63770 * 0.02562 * 17 16 15 23 23 H 1.09001 * 109.47434 * 300.00316 * 1 2 3 24 24 H 1.09005 * 109.46928 * 59.99737 * 1 2 3 25 25 H 1.09000 * 109.46832 * 179.97438 * 1 2 3 26 26 H 0.96998 * 120.00070 * 180.02562 * 7 6 4 27 27 H 0.97001 * 119.99698 * 269.99311 * 12 2 1 28 28 H 1.08998 * 110.27879 * 298.96098 * 15 14 13 29 29 H 1.09004 * 110.27560 * 61.03611 * 15 14 13 30 30 H 1.08994 * 110.07707 * 119.22552 * 16 15 14 31 31 H 1.09008 * 110.07708 * 240.77197 * 16 15 14 32 32 H 1.08010 * 119.83328 * 0.04139 * 18 17 16 33 33 H 1.08002 * 119.91804 * 179.97438 * 19 18 17 34 34 H 1.07992 * 119.93825 * 180.02562 * 20 19 18 35 35 H 1.07992 * 119.95720 * 180.18690 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.8073 -1.1190 4.0078 10 1 1.8278 -0.4192 5.2205 11 1 1.8278 -2.5198 4.0081 12 7 2.0184 -0.6906 -1.1962 13 7 2.2519 0.0300 -2.3748 14 6 2.7968 -0.5559 -3.3961 15 6 2.8650 -0.0075 -4.8009 16 6 3.6036 -1.0763 -5.6181 17 6 3.9320 -2.1944 -4.6581 18 6 4.5872 -3.3937 -4.8681 19 6 4.7765 -4.2780 -3.8228 20 6 4.3128 -3.9674 -2.5565 21 6 3.6578 -2.7765 -2.3327 22 6 3.4592 -1.8745 -3.3876 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7094 1.1618 3.4844 27 1 2.1801 -1.6467 -1.1721 28 1 1.8607 0.1438 -5.1965 29 1 3.4220 0.9293 -4.8140 30 1 2.9617 -1.4457 -6.4178 31 1 4.5207 -0.6605 -6.0357 32 1 4.9532 -3.6406 -5.8539 33 1 5.2888 -5.2132 -3.9943 34 1 4.4631 -4.6609 -1.7424 35 1 3.2998 -2.5357 -1.3426 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771886185.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:20 Heat of formation + Delta-G solvation = 48.043598 kcal Electronic energy + Delta-G solvation = -16920.262580 eV Core-core repulsion = 14303.977516 eV Total energy + Delta-G solvation = -2616.285063 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.99827 -37.95002 -36.67185 -35.17459 -32.96148 -31.49206 -30.08009 -28.92217 -27.34972 -25.50242 -23.69385 -22.61966 -21.60283 -20.83995 -18.70161 -17.73753 -17.01732 -16.48100 -16.22457 -16.14793 -15.54381 -15.07440 -14.45372 -14.26235 -14.14034 -13.49283 -13.46615 -13.20037 -13.19686 -12.89558 -12.84511 -12.51528 -12.40956 -12.30292 -12.10467 -11.90170 -11.69590 -11.18047 -10.78921 -10.59380 -9.96212 -9.67193 -8.36125 -8.17486 -6.39772 0.02410 0.44757 1.38531 1.40863 1.48950 1.64423 2.17163 2.44015 2.92969 3.06336 3.47082 3.82163 4.05282 4.08447 4.27745 4.39079 4.45693 4.50949 4.64525 4.71412 4.90264 4.94718 5.03984 5.08019 5.12238 5.21717 5.25282 5.34446 5.47572 5.55239 5.58055 5.62556 5.78456 5.88014 6.08157 6.16984 6.37978 6.79136 7.31832 7.74205 8.83248 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.027557 B = 0.006034 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.845772 B = 4638.966783 C = 5476.245957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.303 3.697 3 H -0.001 1.001 4 C -0.553 4.553 5 H 0.055 0.945 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.970 3.030 9 H -0.274 1.274 10 H -0.277 1.277 11 H -0.267 1.267 12 N -0.644 5.644 13 N -0.244 5.244 14 C 0.039 3.961 15 C -0.051 4.051 16 C -0.067 4.067 17 C -0.083 4.083 18 C -0.107 4.107 19 C -0.110 4.110 20 C -0.130 4.130 21 C -0.138 4.138 22 C -0.117 4.117 23 H 0.071 0.929 24 H 0.020 0.980 25 H 0.027 0.973 26 H 0.268 0.732 27 H 0.374 0.626 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.136 0.864 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.967 -8.544 -16.229 19.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.199 3.801 3 H 0.017 0.983 4 C -0.592 4.592 5 H 0.073 0.927 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.794 3.206 9 H -0.199 1.199 10 H -0.202 1.202 11 H -0.192 1.192 12 N -0.384 5.384 13 N -0.054 5.054 14 C -0.151 4.151 15 C -0.090 4.090 16 C -0.104 4.104 17 C -0.086 4.086 18 C -0.125 4.125 19 C -0.129 4.129 20 C -0.148 4.148 21 C -0.159 4.159 22 C -0.119 4.119 23 H 0.090 0.910 24 H 0.039 0.961 25 H 0.046 0.954 26 H 0.078 0.922 27 H 0.216 0.784 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.177 0.823 33 H 0.176 0.824 34 H 0.154 0.846 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.383 -7.357 -15.567 18.363 hybrid contribution 0.368 -1.145 1.484 1.910 sum 6.751 -8.502 -14.084 17.783 Atomic orbital electron populations 1.21985 0.98526 0.98917 0.99791 1.18164 0.90570 0.91474 0.79849 0.98340 1.21467 1.32822 1.13516 0.91409 0.92687 1.25711 0.94756 0.95626 1.01849 1.70003 1.36586 1.23531 1.24852 0.85437 0.78551 0.78757 0.77840 1.19891 1.20155 1.19189 1.48917 1.73623 1.07632 1.08275 1.73979 1.12044 1.25514 0.93842 1.24074 1.01014 0.93771 0.96246 1.20713 1.02743 0.99477 0.86086 1.20863 1.01952 0.91233 0.96370 1.20965 0.97067 0.96491 0.94045 1.20980 0.98555 0.92153 1.00784 1.21519 0.99017 1.00557 0.91772 1.21228 0.98549 0.95925 0.99071 1.21416 1.01280 0.95657 0.97527 1.20354 1.00899 0.94877 0.95819 0.91042 0.96135 0.95401 0.92238 0.78353 0.88599 0.88783 0.87201 0.87351 0.82255 0.82392 0.84583 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.07 9.29 71.98 0.67 -6.41 16 2 C 0.30 16.99 3.23 44.25 0.14 17.13 16 3 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 4 C -0.55 -31.75 8.74 25.60 0.22 -31.53 16 5 H 0.05 3.09 7.79 -2.91 -0.02 3.07 16 6 C 0.02 1.19 5.30 84.65 0.45 1.64 16 7 N -0.91 -53.00 11.32 21.45 0.24 -52.75 16 8 Si 0.97 43.75 29.54 68.60 2.03 45.78 16 9 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 12 N -0.64 -32.18 5.87 -172.51 -1.01 -33.20 16 13 N -0.24 -11.20 11.58 -42.57 -0.49 -11.69 16 14 C 0.04 1.42 7.44 45.41 0.34 1.76 16 15 C -0.05 -1.26 6.86 30.09 0.21 -1.05 16 16 C -0.07 -1.22 6.79 30.10 0.20 -1.02 16 17 C -0.08 -2.06 6.20 -19.51 -0.12 -2.18 16 18 C -0.11 -2.12 10.03 22.27 0.22 -1.90 16 19 C -0.11 -2.28 10.04 22.30 0.22 -2.05 16 20 C -0.13 -3.53 10.02 22.19 0.22 -3.31 16 21 C -0.14 -4.85 9.20 22.63 0.21 -4.64 16 22 C -0.12 -3.96 6.00 -20.09 -0.12 -4.08 16 23 H 0.07 4.04 6.07 -2.39 -0.01 4.02 16 24 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 25 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 27 H 0.37 17.88 4.62 -213.32 -0.99 16.89 16 28 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 30 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 33 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 35 H 0.10 3.94 5.29 -2.91 -0.02 3.92 16 Total: -1.00 -68.68 292.04 3.74 -64.94 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: 0.11 Total: 24.56 kcal Atomic # 6 Polarization: -40.50 SS G_CDS: 2.87 Total: -37.63 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -1.26 Total: -97.65 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -68.68 3.74 -64.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886185.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.986 kcal (2) G-P(sol) polarization free energy of solvation -68.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds