Wall clock time and date at job start Mon Mar 30 2020 06:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47128 * 2 1 4 4 C 1.50700 * 109.47312 * 119.99859 * 2 1 3 5 5 H 1.08004 * 120.00160 * 119.99496 * 4 2 1 6 6 C 1.37874 * 120.00110 * 300.00153 * 4 2 1 7 7 N 1.31513 * 120.00028 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00159 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47071 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47167 * 119.99696 * 8 6 4 11 11 H 1.48503 * 109.46962 * 239.99893 * 8 6 4 12 12 N 1.46500 * 109.47028 * 240.00036 * 2 1 3 13 13 N 1.40100 * 119.99927 * 90.27788 * 12 2 1 14 14 C 1.30223 * 119.99835 * 179.72584 * 13 12 2 15 15 C 1.41824 * 119.99854 * 179.97438 * 14 13 12 16 16 C 1.34858 * 119.99626 * 174.29289 * 15 14 13 17 17 C 1.47210 * 119.99921 * 352.30573 * 16 15 14 18 18 C 1.39827 * 120.17018 * 327.10442 * 17 16 15 19 19 C 1.37892 * 119.82404 * 179.74669 * 18 17 16 20 20 C 1.38407 * 120.16953 * 0.53535 * 19 18 17 21 21 C 1.38393 * 120.34439 * 359.73858 * 20 19 18 22 22 C 1.37891 * 120.16942 * 359.97438 * 21 20 19 23 23 H 1.08997 * 109.47512 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47106 * 300.00133 * 1 2 3 25 25 H 1.08995 * 109.47142 * 59.99664 * 1 2 3 26 26 H 0.97005 * 120.00349 * 180.02562 * 7 6 4 27 27 H 0.97001 * 119.99754 * 269.99661 * 12 2 1 28 28 H 1.08001 * 119.99676 * 359.97438 * 14 13 12 29 29 H 1.07996 * 119.99836 * 354.29008 * 15 14 13 30 30 H 1.07994 * 119.99618 * 172.31193 * 16 15 14 31 31 H 1.07994 * 120.08999 * 359.97438 * 18 17 16 32 32 H 1.08001 * 119.91808 * 180.29432 * 19 18 17 33 33 H 1.07997 * 119.82470 * 179.76932 * 20 19 18 34 34 H 1.07995 * 119.91768 * 180.02562 * 21 20 19 35 35 H 1.08003 * 120.09009 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3226 -1.1195 4.0080 9 1 3.1475 -2.2862 3.6038 10 1 3.1474 -0.1857 4.8160 11 1 1.1679 -1.5865 4.8166 12 7 2.0183 -0.6906 -1.1962 13 7 2.2573 0.0309 -2.3731 14 6 2.6964 -0.5821 -3.4348 15 6 2.9379 0.1482 -4.6263 16 6 3.5003 -0.4624 -5.6891 17 6 4.0180 -1.8345 -5.5607 18 6 4.5692 -2.2673 -4.3508 19 6 5.0473 -3.5557 -4.2369 20 6 4.9927 -4.4161 -5.3196 21 6 4.4538 -3.9933 -6.5222 22 6 3.9663 -2.7098 -6.6499 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 0.7095 1.1619 3.4844 27 1 2.1800 -1.6467 -1.1721 28 1 2.8767 -1.6466 -3.4078 29 1 2.6713 1.1932 -4.6825 30 1 3.5710 0.0553 -6.6342 31 1 4.6170 -1.5955 -3.5065 32 1 5.4690 -3.8930 -3.3016 33 1 5.3721 -5.4228 -5.2253 34 1 4.4143 -4.6706 -7.3624 35 1 3.5456 -2.3813 -7.5889 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771886514.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:50 Heat of formation + Delta-G solvation = 83.269901 kcal Electronic energy + Delta-G solvation = -16204.083273 eV Core-core repulsion = 13589.325737 eV Total energy + Delta-G solvation = -2614.757536 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.27294 -36.74397 -34.98664 -33.33289 -31.30058 -30.84488 -29.40133 -27.15905 -25.27999 -23.65943 -22.44627 -21.31135 -20.23957 -19.05123 -17.32784 -16.17411 -16.04186 -15.49825 -14.95787 -14.72024 -13.92286 -13.45012 -13.35707 -13.20432 -12.61033 -12.50575 -12.47974 -12.13066 -11.55914 -11.10343 -10.99675 -10.98683 -10.92993 -10.70255 -10.30465 -10.25610 -9.76140 -9.50873 -9.07042 -8.80815 -8.57650 -8.27894 -6.71259 -6.17422 -4.26080 0.91741 1.45163 2.03177 3.21154 3.28899 3.32048 3.53268 3.82363 3.98830 4.34291 4.90372 4.94502 4.99872 5.15181 5.17333 5.45241 5.48075 5.53426 5.65704 6.00352 6.04483 6.24366 6.36895 6.48705 6.55164 6.63269 6.75337 6.79996 6.95586 7.01713 7.09244 7.14511 7.53652 7.73008 7.81127 8.09392 8.24298 8.80996 9.24211 9.40969 10.88468 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029593 B = 0.004438 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.957547 B = 6308.255280 C = 7017.285745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.293 3.707 3 H 0.043 0.957 4 C -0.531 4.531 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.616 5.616 13 N -0.186 5.186 14 C -0.051 4.051 15 C -0.045 4.045 16 C -0.149 4.149 17 C -0.040 4.040 18 C -0.115 4.115 19 C -0.121 4.121 20 C -0.129 4.129 21 C -0.124 4.124 22 C -0.117 4.117 23 H 0.026 0.974 24 H 0.091 0.909 25 H 0.013 0.987 26 H 0.264 0.736 27 H 0.369 0.631 28 H 0.110 0.890 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.132 0.868 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.645 -6.421 -15.154 17.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.191 3.809 3 H 0.061 0.939 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.730 3.270 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.351 5.351 13 N -0.001 5.001 14 C -0.254 4.254 15 C -0.065 4.065 16 C -0.175 4.175 17 C -0.040 4.040 18 C -0.133 4.133 19 C -0.139 4.139 20 C -0.148 4.148 21 C -0.142 4.142 22 C -0.136 4.136 23 H 0.045 0.955 24 H 0.109 0.891 25 H 0.032 0.968 26 H 0.074 0.926 27 H 0.205 0.795 28 H 0.127 0.873 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.150 0.850 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.174 -5.294 -14.372 16.167 hybrid contribution 0.477 -1.703 0.703 1.903 sum 5.651 -6.997 -13.669 16.363 Atomic orbital electron populations 1.22203 0.98853 0.99274 1.00636 1.18605 0.90287 0.93659 0.78323 0.93866 1.21258 1.32288 1.13310 0.90164 0.92125 1.24859 0.94776 0.94984 0.98979 1.69898 1.36033 1.22507 1.23875 0.86365 0.78638 0.79543 0.82411 1.19763 1.20774 1.20800 1.49212 1.70904 1.07921 1.07088 1.74297 1.03286 1.28196 0.94336 1.23138 1.10164 0.98498 0.93585 1.20584 0.96123 0.98648 0.91142 1.21829 1.03542 0.93497 0.98609 1.19079 0.97575 0.93983 0.93355 1.21735 0.97775 0.96423 0.97368 1.21132 0.99917 0.94103 0.98763 1.21167 1.00625 0.99536 0.93430 1.21021 0.99401 0.96158 0.97595 1.21287 1.00287 0.93666 0.98338 0.95481 0.89053 0.96816 0.92564 0.79493 0.87326 0.85921 0.85819 0.84986 0.86154 0.86514 0.86408 0.86092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.29 37.15 0.35 -3.37 16 2 C 0.29 7.49 3.23 -69.09 -0.22 7.27 16 3 H 0.04 1.22 8.14 -51.93 -0.42 0.80 16 4 C -0.53 -14.23 8.74 -34.44 -0.30 -14.53 16 5 H 0.06 1.59 7.79 -52.48 -0.41 1.19 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -24.58 11.32 55.43 0.63 -23.95 16 8 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.62 -13.74 6.10 -5.88 -0.04 -13.78 16 13 N -0.19 -3.84 11.47 30.94 0.35 -3.48 16 14 C -0.05 -0.87 8.35 -16.86 -0.14 -1.01 16 15 C -0.04 -0.64 9.85 -39.41 -0.39 -1.03 16 16 C -0.15 -1.83 9.88 -37.14 -0.37 -2.20 16 17 C -0.04 -0.51 5.43 -105.06 -0.57 -1.08 16 18 C -0.11 -1.55 7.40 -39.11 -0.29 -1.84 16 19 C -0.12 -1.48 10.03 -39.65 -0.40 -1.88 16 20 C -0.13 -1.42 10.04 -39.46 -0.40 -1.81 16 21 C -0.12 -1.31 10.03 -39.65 -0.40 -1.70 16 22 C -0.12 -1.32 9.80 -39.11 -0.38 -1.71 16 23 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.09 2.42 6.07 -51.92 -0.32 2.10 16 25 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.37 7.70 8.58 -182.60 -1.57 6.14 16 28 H 0.11 1.80 5.05 -52.49 -0.26 1.54 16 29 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.13 1.92 5.91 -52.49 -0.31 1.61 16 32 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 33 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 301.60 15.07 4.55 4.55 Total: -1.00 -28.32 301.60 -8.94 -37.26 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -5.81 Total: 6.93 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -3.60 Total: -23.18 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.95 Total: -41.21 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.32 -8.94 -37.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886514.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.531 kcal (2) G-P(sol) polarization free energy of solvation -28.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds