Wall clock time and date at job start Mon Mar 30 2020 06:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47128 * 2 1 4 4 C 1.50700 * 109.47312 * 119.99859 * 2 1 3 5 5 H 1.08004 * 120.00160 * 119.99496 * 4 2 1 6 6 C 1.37874 * 120.00110 * 300.00153 * 4 2 1 7 7 N 1.31513 * 120.00028 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00159 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47071 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47167 * 119.99696 * 8 6 4 11 11 H 1.48503 * 109.46962 * 239.99893 * 8 6 4 12 12 N 1.46500 * 109.47028 * 240.00036 * 2 1 3 13 13 N 1.40100 * 119.99927 * 90.27788 * 12 2 1 14 14 C 1.30223 * 119.99835 * 179.72584 * 13 12 2 15 15 C 1.41824 * 119.99854 * 179.97438 * 14 13 12 16 16 C 1.34858 * 119.99626 * 174.29289 * 15 14 13 17 17 C 1.47210 * 119.99921 * 352.30573 * 16 15 14 18 18 C 1.39827 * 120.17018 * 327.10442 * 17 16 15 19 19 C 1.37892 * 119.82404 * 179.74669 * 18 17 16 20 20 C 1.38407 * 120.16953 * 0.53535 * 19 18 17 21 21 C 1.38393 * 120.34439 * 359.73858 * 20 19 18 22 22 C 1.37891 * 120.16942 * 359.97438 * 21 20 19 23 23 H 1.08997 * 109.47512 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47106 * 300.00133 * 1 2 3 25 25 H 1.08995 * 109.47142 * 59.99664 * 1 2 3 26 26 H 0.97005 * 120.00349 * 180.02562 * 7 6 4 27 27 H 0.97001 * 119.99754 * 269.99661 * 12 2 1 28 28 H 1.08001 * 119.99676 * 359.97438 * 14 13 12 29 29 H 1.07996 * 119.99836 * 354.29008 * 15 14 13 30 30 H 1.07994 * 119.99618 * 172.31193 * 16 15 14 31 31 H 1.07994 * 120.08999 * 359.97438 * 18 17 16 32 32 H 1.08001 * 119.91808 * 180.29432 * 19 18 17 33 33 H 1.07997 * 119.82470 * 179.76932 * 20 19 18 34 34 H 1.07995 * 119.91768 * 180.02562 * 21 20 19 35 35 H 1.08003 * 120.09009 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3226 -1.1195 4.0080 9 1 3.1475 -2.2862 3.6038 10 1 3.1474 -0.1857 4.8160 11 1 1.1679 -1.5865 4.8166 12 7 2.0183 -0.6906 -1.1962 13 7 2.2573 0.0309 -2.3731 14 6 2.6964 -0.5821 -3.4348 15 6 2.9379 0.1482 -4.6263 16 6 3.5003 -0.4624 -5.6891 17 6 4.0180 -1.8345 -5.5607 18 6 4.5692 -2.2673 -4.3508 19 6 5.0473 -3.5557 -4.2369 20 6 4.9927 -4.4161 -5.3196 21 6 4.4538 -3.9933 -6.5222 22 6 3.9663 -2.7098 -6.6499 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 0.7095 1.1619 3.4844 27 1 2.1800 -1.6467 -1.1721 28 1 2.8767 -1.6466 -3.4078 29 1 2.6713 1.1932 -4.6825 30 1 3.5710 0.0553 -6.6342 31 1 4.6170 -1.5955 -3.5065 32 1 5.4690 -3.8930 -3.3016 33 1 5.3721 -5.4228 -5.2253 34 1 4.4143 -4.6706 -7.3624 35 1 3.5456 -2.3813 -7.5889 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771886514.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:45 Heat of formation + Delta-G solvation = 67.718790 kcal Electronic energy + Delta-G solvation = -16204.757620 eV Core-core repulsion = 13589.325737 eV Total energy + Delta-G solvation = -2615.431883 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 5.14 seconds Orbital eigenvalues (eV) -40.24521 -38.22403 -36.53027 -34.89004 -32.95115 -31.83534 -30.61357 -28.70952 -27.32449 -24.89263 -23.38063 -22.67010 -21.94337 -20.18360 -18.97650 -17.72171 -17.24918 -16.89673 -16.41102 -15.78168 -15.45750 -14.71142 -14.65774 -14.41409 -14.12580 -14.06201 -13.53456 -13.45326 -13.15854 -12.91166 -12.79053 -12.52608 -12.28545 -12.11675 -11.93723 -11.87100 -11.20109 -10.88862 -10.85018 -10.58024 -9.76038 -9.46731 -8.26789 -8.14803 -6.37226 -0.13807 0.53308 0.93411 1.41086 1.41802 1.53902 2.20756 2.31455 2.47748 3.01309 3.09061 3.91794 4.04510 4.14019 4.19401 4.33868 4.40321 4.60932 4.64772 4.73341 4.93341 5.01547 5.04522 5.09924 5.18707 5.27378 5.40705 5.48054 5.55860 5.65465 5.70059 5.73511 5.83325 5.94938 6.14007 6.19339 6.38233 6.81524 7.34398 7.72951 8.85513 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029593 B = 0.004438 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.957547 B = 6308.255280 C = 7017.285745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.304 3.696 3 H 0.002 0.998 4 C -0.548 4.548 5 H 0.060 0.940 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.971 3.029 9 H -0.268 1.268 10 H -0.278 1.278 11 H -0.275 1.275 12 N -0.639 5.639 13 N -0.246 5.246 14 C 0.001 3.999 15 C -0.095 4.095 16 C -0.092 4.092 17 C -0.072 4.072 18 C -0.131 4.131 19 C -0.138 4.138 20 C -0.126 4.126 21 C -0.125 4.125 22 C -0.111 4.111 23 H 0.029 0.971 24 H 0.070 0.930 25 H 0.017 0.983 26 H 0.267 0.733 27 H 0.371 0.629 28 H 0.113 0.887 29 H 0.131 0.869 30 H 0.161 0.839 31 H 0.111 0.889 32 H 0.125 0.875 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.685 -8.318 -17.692 20.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.201 3.799 3 H 0.020 0.980 4 C -0.587 4.587 5 H 0.078 0.922 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.796 3.204 9 H -0.192 1.192 10 H -0.204 1.204 11 H -0.201 1.201 12 N -0.376 5.376 13 N -0.057 5.057 14 C -0.205 4.205 15 C -0.115 4.115 16 C -0.117 4.117 17 C -0.072 4.072 18 C -0.150 4.150 19 C -0.156 4.156 20 C -0.144 4.144 21 C -0.143 4.143 22 C -0.129 4.129 23 H 0.048 0.952 24 H 0.089 0.911 25 H 0.036 0.964 26 H 0.077 0.923 27 H 0.207 0.793 28 H 0.130 0.870 29 H 0.149 0.851 30 H 0.179 0.821 31 H 0.129 0.871 32 H 0.143 0.857 33 H 0.159 0.841 34 H 0.167 0.833 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.215 -7.186 -16.925 19.409 hybrid contribution 0.349 -1.266 1.069 1.693 sum 6.564 -8.452 -15.856 19.130 Atomic orbital electron populations 1.22018 0.98729 0.99049 0.99724 1.18160 0.90358 0.91671 0.79752 0.97989 1.21531 1.32537 1.13464 0.91174 0.92226 1.25713 0.94826 0.95629 1.01918 1.70020 1.36850 1.23688 1.24684 0.85312 0.78194 0.78426 0.78476 1.19201 1.20416 1.20058 1.48611 1.74142 1.07568 1.07245 1.74330 1.07987 1.28620 0.94754 1.23666 1.04628 0.98966 0.93223 1.20655 1.00401 0.99492 0.90936 1.22313 0.97865 0.92685 0.98847 1.19301 0.99148 0.94836 0.93890 1.21704 0.99161 0.96928 0.97178 1.21319 1.00381 0.94002 0.99859 1.21537 0.99470 1.00312 0.93073 1.21448 0.98138 0.96429 0.98285 1.21634 0.99117 0.93618 0.98546 0.95168 0.91105 0.96351 0.92330 0.79283 0.87002 0.85079 0.82133 0.87086 0.85658 0.84131 0.83307 0.83323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.03 9.29 71.98 0.67 -6.36 16 2 C 0.30 16.44 3.23 44.24 0.14 16.58 16 3 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 4 C -0.55 -30.47 8.74 25.60 0.22 -30.24 16 5 H 0.06 3.23 7.79 -2.91 -0.02 3.21 16 6 C 0.02 1.07 5.30 84.65 0.45 1.52 16 7 N -0.91 -52.32 11.32 21.45 0.24 -52.08 16 8 Si 0.97 42.99 29.54 68.60 2.03 45.02 16 9 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 12 N -0.64 -30.13 6.10 -172.53 -1.05 -31.18 16 13 N -0.25 -10.63 11.47 -56.03 -0.64 -11.27 16 14 C 0.00 0.04 8.35 85.82 0.72 0.76 16 15 C -0.09 -2.59 9.85 22.38 0.22 -2.37 16 16 C -0.09 -1.97 9.88 23.85 0.24 -1.73 16 17 C -0.07 -1.64 5.43 -20.15 -0.11 -1.75 16 18 C -0.13 -3.41 7.40 22.57 0.17 -3.24 16 19 C -0.14 -3.16 10.03 22.23 0.22 -2.94 16 20 C -0.13 -2.35 10.04 22.35 0.22 -2.12 16 21 C -0.13 -2.09 10.03 22.22 0.22 -1.87 16 22 C -0.11 -2.02 9.80 22.57 0.22 -1.79 16 23 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.07 3.92 6.07 -2.38 -0.01 3.91 16 25 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.27 14.35 8.31 -92.70 -0.77 13.58 16 27 H 0.37 16.33 8.58 -213.32 -1.83 14.50 16 28 H 0.11 3.75 5.05 -2.91 -0.01 3.74 16 29 H 0.13 3.37 8.06 -2.91 -0.02 3.35 16 30 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.11 3.29 5.91 -2.91 -0.02 3.27 16 32 H 0.13 2.64 8.06 -2.91 -0.02 2.61 16 33 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -63.65 301.60 3.43 -60.22 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: -0.75 Total: 24.87 kcal Atomic # 6 Polarization: -39.17 SS G_CDS: 3.61 Total: -35.57 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -1.45 Total: -94.53 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -63.65 3.43 -60.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886514.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.936 kcal (2) G-P(sol) polarization free energy of solvation -63.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.14 seconds